[Tutor] Basic web form interaction with http://propka.ki.ku.dk/

[Mateusz Koryciński]

Hi,

Have You tried something similar to interface used in BioPython? I think U
could get solution by reading code for connection with databases like
Entrez. Maybe this will give you some ideas.

Do you want your script to download pdb file from PDB database? Or you want
only sending and receiving from propka?


Cheers,
Mateusz

2011/8/6 Troels Emtekær Linnet <tlinnet at gmail.com>

> Dear Python users.
>
> I am an semi-experienced in python, but totally new on the web
> interactions.
> I have been working with scripts o the protein program Pymol, which can be
> extended with python script.
>
> I hope that some of you can help me with an interaction script to
> http://propka.ki.ku.dk/.
> I hope that some of you can show be a basic python script to load the
> suitable python modules and interacting
> with the web form.
>
> The main idea is, to load a protein structure in pymol.
> Then writing a pymol/python script that saves the stucture of the protein
> into a .pdb file.
> Then open http://propka.ki.ku.dk/, send the .pdb file, wait 1-2 minutes
> for the result, and capture the result.
>
> I hope that some of you can show be the basics steps, to interact with the
> web form.
>
> Best
> Troels
>
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-- 
Pozdrawiam,
Mateusz Koryciński
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