[SciPy-user] Pointers installing scipy on OS X
Rick Muller
rmuller at sandia.gov
Fri Aug 19 15:20:45 EDT 2005
On Aug 19, 2005, at 7:52 AM, Chris Fonnesbeck wrote:
> On 8/19/05, Rick Muller <rmuller at sandia.gov> wrote:
>>
>> On Aug 18, 2005, at 9:04 PM, Chris Fonnesbeck wrote:
>>>
>>> Rick, could you provide the full output from your attempted build --
>>> that will help me diagnose the problem.
>>>
>>
>> Attached. Thanks very much for looking.
>>
>
> Rick,
>
> Try disabling xplt (you probably want to use gplt instead anyhow) by
> adding it to the ignore_packages list as a string (at the end of the
> setup.py file. Then try a clean build.
>
>
Chris,
Thanks for your help. This worked much better. I've attached the error
messages I got after I compiled, installed, and ran scipy.test(). Are
these anything I should be worried about? I'm primarily interested in
the scipy.optimize routines.
Rick
>>> import scipy
>>> scipy.test()
!! No test file 'test_lena.py' found for <module 'scipy.plt.lena'
from '...te-packages/scipy/plt/lena.pyc'>
!! No test file 'test_build_py.py' found for <module
'scipy_distutils.command.build_py' from
'...distutils/command/build_py.pyc'>
Found 4 tests for scipy.io.array_import
Found 23 tests for scipy_base.function_base
!! No test file 'test_ltisys.py' found for <module
'scipy.signal.ltisys' from '...ckages/scipy/signal/ltisys.pyc'>
!! No test file 'test_info_integrate.py' found for <module
'scipy.integrate.info_integrate' from
'...y/integrate/info_integrate.pyc'>
!! No test file 'test___init__.py' found for <module 'scipy.xxx.yyy'
from '...ges/scipy/xxx/yyy/__init__.pyc'>
!! No test file 'test_vq.py' found for <module 'scipy.cluster.vq'
from '...-packages/scipy/cluster/vq.pyc'>
!! No test file 'test___init__.py' found for <module 'scipy.xxx'
from '...ackages/scipy/xxx/__init__.pyc'>
Found 128 tests for scipy.linalg.fblas
!! No test file 'test_ccompiler.py' found for <module
'scipy_distutils.ccompiler' from '.../scipy_distutils/ccompiler.pyc'>
!! No test file 'test_info_interpolate.py' found for <module
'scipy.interpolate.info_interpolate' from
'...terpolate/info_interpolate.pyc'>
!! No test file 'test___cvs_version__.py' found for <module
'scipy.linalg.__cvs_version__' from
'...ipy/linalg/__cvs_version__.pyc'>
!! No test file 'test_info_cow.py' found for <module
'scipy.cow.info_cow' from '...ackages/scipy/cow/info_cow.pyc'>
!! No test file 'test_spam.py' found for <module 'scipy.xxx.spam'
from '...ite-packages/scipy/xxx/spam.so'>
!! No test file 'test_quadpack.py' found for <module
'scipy.integrate.quadpack' from '...s/scipy/integrate/quadpack.pyc'>
!! No test file 'test_info_gplt.py' found for <module
'scipy.gplt.info_gplt' from '...kages/scipy/gplt/info_gplt.pyc'>
!! No test file 'test_tree.py' found for <module 'scipy.ga.tree'
from '...ite-packages/scipy/ga/tree.pyc'>
Found 92 tests for scipy.stats.stats
Found 36 tests for scipy.linalg.decomp
!! No test file 'test_display_test.py' found for <module
'scipy_base.display_test' from '...ges/scipy_base/display_test.so'>
!! No test file 'test_config_compiler.py' found for <module
'scipy_distutils.command.config_compiler' from
'...ls/command/config_compiler.pyc'>
!! No test file 'test_quadrature.py' found for <module
'scipy.integrate.quadrature' from '...scipy/integrate/quadrature.pyc'>
!! No test file 'test___init__.py' found for <module 'scipy.cow'
from '...ackages/scipy/cow/__init__.pyc'>
Found 20 tests for scipy.fftpack.pseudo_diffs
!! No test file 'test_sigtools.py' found for <module
'scipy.signal.sigtools' from '...kages/scipy/signal/sigtools.so'>
!! No test file 'test_optimize.py' found for <module
'scipy.optimize.optimize' from '...es/scipy/optimize/optimize.pyc'>
!! No test file 'test_scipy_test_version.py' found for <module
'scipy_test.scipy_test_version' from
'...py_test/scipy_test_version.pyc'>
!! No test file 'test__iterative.py' found for <module
'scipy.linalg._iterative' from '...ges/scipy/linalg/_iterative.so'>
!! No test file 'test_build_clib.py' found for <module
'scipy_distutils.command.build_clib' from
'...stutils/command/build_clib.pyc'>
!! No test file 'test_specfun.py' found for <module
'scipy.special.specfun' from '...kages/scipy/special/specfun.so'>
!! No test file 'test__compiled_base.py' found for <module
'scipy_base._compiled_base' from '...s/scipy_base/_compiled_base.so'>
!! No test file 'test_dumb_shelve.py' found for <module
'scipy.io.dumb_shelve' from '...kages/scipy/io/dumb_shelve.pyc'>
!! No test file 'test_common_routines.py' found for <module
'scipy.integrate.common_routines' from
'.../integrate/common_routines.pyc'>
!! No test file 'test___init__.py' found for <module
'scipy_distutils.command' from '...distutils/command/__init__.pyc'>
!! No test file 'test_iterative.py' found for <module
'scipy.linalg.iterative' from '...ges/scipy/linalg/iterative.pyc'>
!! No test file 'test__fftpack.py' found for <module
'scipy.fftpack._fftpack' from '...ages/scipy/fftpack/_fftpack.so'>
Found 5 tests for scipy.interpolate.fitpack
!! No test file 'test_calc_lwork.py' found for <module
'scipy.linalg.calc_lwork' from '...ges/scipy/linalg/calc_lwork.so'>
!! No test file 'test_ode.py' found for <module
'scipy.integrate.ode' from '...ckages/scipy/integrate/ode.pyc'>
!! No test file 'test___cvs_version__.py' found for <module
'scipy.special.__cvs_version__' from
'...py/special/__cvs_version__.pyc'>
!! No test file 'test_info_io.py' found for <module
'scipy.io.info_io' from '...-packages/scipy/io/info_io.pyc'>
!! No test file 'test___init__.py' found for <module
'scipy.interpolate' from '...scipy/interpolate/__init__.pyc'>
!! No test file 'test__zeros.py' found for <module
'scipy.optimize._zeros' from '...kages/scipy/optimize/_zeros.so'>
!! No test file 'test_futil.py' found for <module
'scipy.stats.futil' from '...-packages/scipy/stats/futil.so'>
!! No test file 'test___cvs_version__.py' found for <module
'scipy.fftpack.__cvs_version__' from
'...py/fftpack/__cvs_version__.pyc'>
Found 12 tests for scipy.io.mmio
!! No test file 'test__flinalg.py' found for <module
'scipy.linalg._flinalg' from '...kages/scipy/linalg/_flinalg.so'>
Found 2 tests for scipy_base.fastumath
!! No test file 'test_linesearch.py' found for <module
'scipy.optimize.linesearch' from '.../scipy/optimize/linesearch.pyc'>
!! No test file 'test___init__.py' found for <module 'scipy' from
'...te-packages/scipy/__init__.pyc'>
!! No test file 'test_convolve.py' found for <module
'scipy.fftpack.convolve' from '...ages/scipy/fftpack/convolve.so'>
!! No test file 'test___init__.py' found for <module
'scipy.integrate' from '...s/scipy/integrate/__init__.pyc'>
Found 4 tests for scipy.linalg.lapack
!! No test file 'test_ga_list.py' found for <module
'scipy.ga.ga_list' from '...-packages/scipy/ga/ga_list.pyc'>
!! No test file 'test_special_version.py' found for <module
'scipy.special.special_version' from
'...py/special/special_version.pyc'>
Found 19 tests for scipy.fftpack.basic
!! No test file 'test_anneal.py' found for <module
'scipy.optimize.anneal' from '...ages/scipy/optimize/anneal.pyc'>
!! No test file 'test_fitpack2.py' found for <module
'scipy.interpolate.fitpack2' from '...scipy/interpolate/fitpack2.pyc'>
!! No test file 'test_gene.py' found for <module 'scipy.ga.gene'
from '...ite-packages/scipy/ga/gene.pyc'>
!! No test file 'test___init__.py' found for <module 'scipy.signal'
from '...ages/scipy/signal/__init__.pyc'>
!! No test file 'test_info_plt.py' found for <module
'scipy.plt.info_plt' from '...ackages/scipy/plt/info_plt.pyc'>
!! No test file 'test_numpyio.py' found for <module
'scipy.io.numpyio' from '...e-packages/scipy/io/numpyio.so'>
!! No test file 'test_extension.py' found for <module
'scipy_distutils.extension' from '.../scipy_distutils/extension.pyc'>
!! No test file 'test_data_store.py' found for <module
'scipy.io.data_store' from '...ckages/scipy/io/data_store.pyc'>
!! No test file 'test_scipy_base_version.py' found for <module
'scipy_base.scipy_base_version' from
'...py_base/scipy_base_version.pyc'>
!! No test file 'test_install.py' found for <module
'scipy_distutils.command.install' from
'..._distutils/command/install.pyc'>
!! No test file 'test_algorithm.py' found for <module
'scipy.ga.algorithm' from '...ackages/scipy/ga/algorithm.pyc'>
Found 1 tests for scipy.optimize.zeros
!! No test file 'test___init__.py' found for <module 'scipy.stats'
from '...kages/scipy/stats/__init__.pyc'>
!! No test file 'test_cblas.py' found for <module
'scipy.linalg.cblas' from '...packages/scipy/linalg/cblas.so'>
!! No test file 'test_pyPlot.py' found for <module
'scipy.gplt.pyPlot' from '...packages/scipy/gplt/pyPlot.pyc'>
!! No test file 'test_info_cluster.py' found for <module
'scipy.cluster.info_cluster' from '...scipy/cluster/info_cluster.pyc'>
!! No test file 'test_mio.py' found for <module 'scipy.io.mio' from
'...site-packages/scipy/io/mio.pyc'>
!! No test file 'test_install_data.py' found for <module
'scipy_distutils.command.install_data' from
'...utils/command/install_data.pyc'>
!! No test file 'test___init__.py' found for <module 'scipy.cluster'
from '...ges/scipy/cluster/__init__.pyc'>
Found 4 tests for scipy_base.index_tricks
!! No test file 'test_selection.py' found for <module
'scipy.ga.selection' from '...ackages/scipy/ga/selection.pyc'>
!! No test file 'test_fftpack_version.py' found for <module
'scipy.fftpack.fftpack_version' from
'...py/fftpack/fftpack_version.pyc'>
!! No test file 'test_scaling.py' found for <module
'scipy.ga.scaling' from '...-packages/scipy/ga/scaling.pyc'>
!! No test file 'test_bdist_rpm.py' found for <module
'scipy_distutils.command.bdist_rpm' from
'...istutils/command/bdist_rpm.pyc'>
Found 41 tests for scipy.linalg.basic
!! No test file 'test_odepack.py' found for <module
'scipy.integrate.odepack' from '...es/scipy/integrate/odepack.pyc'>
!! No test file 'test_exec_command.py' found for <module
'scipy_distutils.exec_command' from
'...ipy_distutils/exec_command.pyc'>
!! No test file 'test_common_routines.py' found for <module
'scipy.optimize.common_routines' from
'...y/optimize/common_routines.pyc'>
!! No test file 'test_interpolate.py' found for <module
'scipy.interpolate.interpolate' from
'...py/interpolate/interpolate.pyc'>
!! No test file 'test_wxplt.py' found for <module 'scipy.plt.wxplt'
from '...e-packages/scipy/plt/wxplt.pyc'>
!! No test file 'test_lbfgsb.py' found for <module
'scipy.optimize.lbfgsb' from '...ages/scipy/optimize/lbfgsb.pyc'>
!! No test file 'test_language.py' found for <module
'scipy.ga.language' from '...packages/scipy/ga/language.pyc'>
Found 43 tests for scipy_base.shape_base
!! No test file 'test_linalg_version.py' found for <module
'scipy.linalg.linalg_version' from '...cipy/linalg/linalg_version.pyc'>
!! No test file 'test_interface.py' found for <module
'scipy.plt.interface' from '...ckages/scipy/plt/interface.pyc'>
!! No test file 'test___init__.py' found for <module 'scipy.plt'
from '...ackages/scipy/plt/__init__.pyc'>
Found 9 tests for scipy_base.matrix_base
!! No test file 'test_minpack2.py' found for <module
'scipy.optimize.minpack2' from '...ges/scipy/optimize/minpack2.so'>
!! No test file 'test_machar.py' found for <module
'scipy_base.machar' from '...packages/scipy_base/machar.pyc'>
!! No test file 'test_log.py' found for <module
'scipy_distutils.log' from '...ckages/scipy_distutils/log.pyc'>
!! No test file 'test_info_scipy_base.py' found for <module
'scipy_base.info_scipy_base' from '...scipy_base/info_scipy_base.pyc'>
Found 342 tests for scipy.special.basic
!! No test file 'test_bsplines.py' found for <module
'scipy.signal.bsplines' from '...ages/scipy/signal/bsplines.pyc'>
!! No test file 'test_unixccompiler.py' found for <module
'scipy_distutils.unixccompiler' from
'...py_distutils/unixccompiler.pyc'>
!! No test file 'test__minpack.py' found for <module
'scipy.optimize._minpack' from '...ges/scipy/optimize/_minpack.so'>
!! No test file 'test_clapack.py' found for <module
'scipy.linalg.clapack' from '...ckages/scipy/linalg/clapack.so'>
!! No test file 'test_interface.py' found for <module
'scipy.gplt.interface' from '...kages/scipy/gplt/interface.pyc'>
!! No test file 'test_scimath.py' found for <module
'scipy_base.scimath' from '...ackages/scipy_base/scimath.pyc'>
!! No test file 'test_new_plot.py' found for <module
'scipy.gplt.new_plot' from '...ckages/scipy/gplt/new_plot.pyc'>
!! No test file 'test_moduleTNC.py' found for <module
'scipy.optimize.moduleTNC' from '...es/scipy/optimize/moduleTNC.so'>
Found 6 tests for scipy.linalg.matfuncs
!! No test file 'test___init__.py' found for <module
'scipy_distutils' from '...s/scipy_distutils/__init__.pyc'>
!! No test file 'test___init__.py' found for <module 'scipy_test'
from '...ckages/scipy_test/__init__.pyc'>
!! No test file 'test_vode.py' found for <module
'scipy.integrate.vode' from '...ckages/scipy/integrate/vode.so'>
!! No test file 'test___init__.py' found for <module 'scipy.fftpack'
from '...ges/scipy/fftpack/__init__.pyc'>
!! No test file 'test_scipy_distutils_version.py' found for <module
'scipy_distutils.scipy_distutils_version' from
'...ls/scipy_distutils_version.pyc'>
!! No test file 'test___init__.py' found for <module 'scipy.gplt'
from '...ckages/scipy/gplt/__init__.pyc'>
!! No test file 'test_info_signal.py' found for <module
'scipy.signal.info_signal' from '...s/scipy/signal/info_signal.pyc'>
!! No test file 'test_sync_cluster.py' found for <module
'scipy.cow.sync_cluster' from '...ges/scipy/cow/sync_cluster.pyc'>
!! No test file 'test__quadpack.py' found for <module
'scipy.integrate._quadpack' from '...s/scipy/integrate/_quadpack.so'>
!! No test file 'test___init__.py' found for <module 'scipy_base'
from '...ckages/scipy_base/__init__.pyc'>
!! No test file 'test_testing.py' found for <module
'scipy_test.testing' from '...ackages/scipy_test/testing.pyc'>
!! No test file 'test_scipy_version.py' found for <module
'scipy.scipy_version' from '...ckages/scipy/scipy_version.pyc'>
!! No test file 'test_info_fftpack.py' found for <module
'scipy.fftpack.info_fftpack' from '...scipy/fftpack/info_fftpack.pyc'>
!! No test file 'test_info_linalg.py' found for <module
'scipy.linalg.info_linalg' from '...s/scipy/linalg/info_linalg.pyc'>
!! No test file 'test_build_src.py' found for <module
'scipy_distutils.command.build_src' from
'...istutils/command/build_src.pyc'>
!! No test file 'test__odepack.py' found for <module
'scipy.integrate._odepack' from '...es/scipy/integrate/_odepack.so'>
!! No test file 'test_build.py' found for <module
'scipy_distutils.command.build' from
'...py_distutils/command/build.pyc'>
!! No test file 'test_plot_objects.py' found for <module
'scipy.plt.plot_objects' from '...ges/scipy/plt/plot_objects.pyc'>
!! No test file 'test_flapack.py' found for <module
'scipy.linalg.flapack' from '...ckages/scipy/linalg/flapack.so'>
!! No test file 'test_pexec.py' found for <module 'scipy_base.pexec'
from '...-packages/scipy_base/pexec.pyc'>
!! No test file 'test_tnc.py' found for <module 'scipy.optimize.tnc'
from '...ackages/scipy/optimize/tnc.pyc'>
!! No test file 'test_population.py' found for <module
'scipy.ga.population' from '...ckages/scipy/ga/population.pyc'>
!! No test file 'test_cephes.py' found for <module
'scipy.special.cephes' from '...ckages/scipy/special/cephes.so'>
!! No test file 'test_helpmod.py' found for <module 'scipy.helpmod'
from '...ite-packages/scipy/helpmod.pyc'>
!! No test file 'test__support.py' found for <module
'scipy.stats._support' from '...kages/scipy/stats/_support.pyc'>
Found 39 tests for scipy_base.type_check
Found 2 tests for scipy_base.limits
!! No test file 'test_filter_design.py' found for <module
'scipy.signal.filter_design' from '...scipy/signal/filter_design.pyc'>
Found 10 tests for scipy.stats.morestats
!! No test file 'test_ga_util.py' found for <module
'scipy.ga.ga_util' from '...-packages/scipy/ga/ga_util.pyc'>
!! No test file 'test_genome.py' found for <module 'scipy.ga.genome'
from '...e-packages/scipy/ga/genome.pyc'>
!! No test file 'test_waveforms.py' found for <module
'scipy.signal.waveforms' from '...ges/scipy/signal/waveforms.pyc'>
!! No test file 'test_common_routines.py' found for <module
'scipy.interpolate.common_routines' from
'...nterpolate/common_routines.pyc'>
!! No test file 'test_dist.py' found for <module
'scipy_distutils.dist' from '...kages/scipy_distutils/dist.pyc'>
!! No test file 'test___init__.py' found for <module 'scipy.io' from
'...packages/scipy/io/__init__.pyc'>
Found 1 tests for scipy.optimize.cobyla
!! No test file 'test_info_special.py' found for <module
'scipy.special.info_special' from '...scipy/special/info_special.pyc'>
!! No test file 'test_flinalg.py' found for <module
'scipy.linalg.flinalg' from '...kages/scipy/linalg/flinalg.pyc'>
Found 14 tests for scipy.linalg.blas
!! No test file 'test_from_template.py' found for <module
'scipy_distutils.from_template' from
'...py_distutils/from_template.pyc'>
!! No test file 'test_rv.py' found for <module 'scipy.stats.rv' from
'...te-packages/scipy/stats/rv.pyc'>
!! No test file 'test_tree_opt.py' found for <module
'scipy.ga.tree_opt' from '...packages/scipy/ga/tree_opt.pyc'>
!! No test file 'test_minpack.py' found for <module
'scipy.optimize.minpack' from '...ges/scipy/optimize/minpack.pyc'>
!! No test file 'test_spline.py' found for <module
'scipy.signal.spline' from '...ackages/scipy/signal/spline.so'>
!! No test file 'test___init__.py' found for <module 'scipy.ga' from
'...packages/scipy/ga/__init__.pyc'>
Found 2 tests for scipy.xxx.foo
!! No test file 'test_pilutil.py' found for <module 'scipy.pilutil'
from '...ite-packages/scipy/pilutil.pyc'>
!! No test file 'test__fitpack.py' found for <module
'scipy.interpolate._fitpack' from '.../scipy/interpolate/_fitpack.so'>
!! No test file 'test__lbfgsb.py' found for <module
'scipy.optimize._lbfgsb' from '...ages/scipy/optimize/_lbfgsb.so'>
!! No test file 'test_orthogonal.py' found for <module
'scipy.special.orthogonal' from '...s/scipy/special/orthogonal.pyc'>
!! No test file 'test_dfitpack.py' found for <module
'scipy.interpolate.dfitpack' from '.../scipy/interpolate/dfitpack.so'>
!! No test file 'test_core.py' found for <module
'scipy_distutils.core' from '...kages/scipy_distutils/core.pyc'>
!! No test file 'test___init__.py' found for <module 'scipy.linalg'
from '...ages/scipy/linalg/__init__.pyc'>
Found 70 tests for scipy.stats.distributions
!! No test file 'test_rand.py' found for <module 'scipy.stats.rand'
from '...e-packages/scipy/stats/rand.so'>
!! No test file 'test_info_stats.py' found for <module
'scipy.stats.info_stats' from '...ges/scipy/stats/info_stats.pyc'>
!! No test file 'test___init__.py' found for <module
'scipy.optimize' from '...es/scipy/optimize/__init__.pyc'>
!! No test file 'test_sdist.py' found for <module
'scipy_distutils.command.sdist' from
'...py_distutils/command/sdist.pyc'>
!! No test file 'test_statlib.py' found for <module
'scipy.stats.statlib' from '...ackages/scipy/stats/statlib.so'>
!! No test file 'test_misc_util.py' found for <module
'scipy_distutils.misc_util' from '.../scipy_distutils/misc_util.pyc'>
!! No test file 'test_plot_utility.py' found for <module
'scipy.plt.plot_utility' from '...ges/scipy/plt/plot_utility.pyc'>
!! No test file 'test_info_xxx.py' found for <module
'scipy.xxx.info_xxx' from '...ackages/scipy/xxx/info_xxx.pyc'>
!! No test file 'test_colormap.py' found for <module
'scipy.plt.colormap' from '...ackages/scipy/plt/colormap.pyc'>
Found 4 tests for scipy.fftpack.helper
!! No test file 'test_info_optimize.py' found for <module
'scipy.optimize.info_optimize' from
'...ipy/optimize/info_optimize.pyc'>
!! No test file 'test_pickler.py' found for <module
'scipy.io.pickler' from '...-packages/scipy/io/pickler.pyc'>
!! No test file 'test_line_endings.py' found for <module
'scipy_distutils.line_endings' from
'...ipy_distutils/line_endings.pyc'>
!! No test file 'test_install_headers.py' found for <module
'scipy_distutils.command.install_headers' from
'...ls/command/install_headers.pyc'>
!! No test file 'test_polynomial.py' found for <module
'scipy_base.polynomial' from '...ages/scipy_base/polynomial.pyc'>
!! No test file 'test___init__.py' found for <module 'scipy.special'
from '...ges/scipy/special/__init__.pyc'>
!! No test file 'test_ppimport.py' found for <module
'scipy_base.ppimport' from '...ckages/scipy_base/ppimport.pyc'>
!! No test file 'test_cow.py' found for <module 'scipy.cow.cow' from
'...ite-packages/scipy/cow/cow.pyc'>
!! No test file 'test_build_ext.py' found for <module
'scipy_distutils.command.build_ext' from
'...istutils/command/build_ext.pyc'>
Found 3 tests for scipy.signal.signaltools
!! No test file 'test__cobyla.py' found for <module
'scipy.optimize._cobyla' from '...ages/scipy/optimize/_cobyla.so'>
Found 0 tests for __main__
Don't worry about a warning regarding the number of bytes read.
Warning: 1000000 bytes requested, 20 bytes read.
..............................caxpy:n=4
..caxpy:n=3
....ccopy:n=4
..ccopy:n=3
.............cscal:n=4
....cswap:n=4
..cswap:n=3
.....daxpy:n=4
..daxpy:n=3
....dcopy:n=4
..dcopy:n=3
.............dscal:n=4
....dswap:n=4
..dswap:n=3
.....saxpy:n=4
..saxpy:n=3
....scopy:n=4
..scopy:n=3
.............sscal:n=4
....sswap:n=4
..sswap:n=3
.....zaxpy:n=4
..zaxpy:n=3
....zcopy:n=4
..zcopy:n=3
.............zscal:n=4
....zswap:n=4
..zswap:n=3
........................................................................
........................................................................
....../System/Library/Frameworks/Python.framework/Versions/2.3/lib/
python2.3/site-packages/scipy/interpolate/fitpack2.py:412: UserWarning:
The coefficients of the spline returned have been computed as the
minimal norm least-squares solution of a (numerically) rank deficient
system (deficiency=7). If deficiency is large, the results may be
inaccurate. Deficiency may strongly depend on the value of eps.
warnings.warn(message)
................E....
****************************************************************
WARNING: clapack module is empty
-----------
See scipy/INSTALL.txt for troubleshooting.
Notes:
* If atlas library is not found by scipy/system_info.py,
then scipy uses flapack instead of clapack.
****************************************************************
.....................TESTING CONVERGENCE
zero should be 1
function f2
cc.bisect : 1.0000000000001952
cc.ridder : 1.0000000000004661
cc.brenth : 0.9999999999999997
cc.brentq : 0.9999999999999577
function f3
cc.bisect : 1.0000000000001952
cc.ridder : 1.0000000000000000
cc.brenth : 1.0000000000000009
cc.brentq : 1.0000000000000011
function f4
cc.bisect : 1.0000000000001952
cc.ridder : 1.0000000000001454
cc.brenth : 0.9999999999993339
cc.brentq : 0.9999999999993339
function f5
cc.bisect : 1.0000000000001952
cc.ridder : 1.0000000000004574
cc.brenth : 0.9999999999991444
cc.brentq : 0.9999999999991444
function f6
cc.bisect : 1.0000000000001952
cc.ridder : 1.0000000000000637
cc.brenth : 0.9999999999999625
cc.brentq : 1.0000000000009841
........................................................................
........................................................................
........................................................................
........................................................................
.....................................Gegenbauer, a = 0.71904257061
........................................................................
...............shifted jacobi p,q = 2.33495352486 2.51752812768
............................Result may be inaccurate, approximate err =
8.14759309194e-09
...Result may be inaccurate, approximate err = 4.54747350886e-13
..............................................Ties preclude use of
exact statistic.
..Ties preclude use of exact statistic.
................Result: [ 4.95535778 0.6666553 ] (exact result =
4.955356249106168, 0.666666666666666)
.
****************************************************************
WARNING: cblas module is empty
-----------
See scipy/INSTALL.txt for troubleshooting.
Notes:
* If atlas library is not found by scipy/system_info.py,
then scipy uses fblas instead of cblas.
****************************************************************
................Testing alpha
.Testing anglit
.Testing arcsine
..Testing beta
.Testing betaprime
..Testing bradford
.Testing burr
.Testing cauchy
.Testing chi
.Testing chi2
.Testing dgamma
..Testing dweibull
.Testing erlang
.Testing expon
.Testing exponpow
.Testing exponweib
.Testing f
.Testing fatiguelife
.Testing fisk
.Testing foldcauchy
.Testing foldnorm
.Testing frechet_l
.Testing frechet_r
.Testing gamma
.Testing genextreme
.Testing gengamma
.Testing genhalflogistic
.Testing genlogistic
.Testing genpareto
..Testing gilbrat
.Testing gompertz
.Testing gumbel_l
.Testing gumbel_r
.Testing halfcauchy
.Testing halflogistic
.Testing halfnorm
..Testing hypsecant
.Testing laplace
.Testing loggamma
.Testing logistic
.Testing lognorm
..Testing lomax
.Testing maxwell
.Testing nakagami
..Testing ncf
.Testing nct
.Testing ncx2
.Testing norm
.Testing pareto
..Testing powerlaw
....Testing rayleigh
.Testing reciprocal
.Testing t
.Testing triang
.Testing tukeylambda
.Testing uniform
.Testing weibull_max
.Testing weibull_min
.........
======================================================================
ERROR: check_simple_todense
(scipy.io.mmio.test_mmio.test_mmio_coordinate)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/System/Library/Frameworks/Python.framework/Versions/2.3/lib/
python2.3/site-packages/scipy/io/tests/test_mmio.py", line 152, in
check_simple_todense
b = mmread(fn).todense()
AttributeError: todense
----------------------------------------------------------------------
Ran 946 tests in 12.924s
FAILED (errors=1)
<unittest.TextTestRunner object at 0x5ecb90>
>>>
More information about the SciPy-User
mailing list