[SciPy-Dev] NumPy 1.8.0rc2 release

Tue Oct 15 10:57:30 EDT 2013

On Mon, Oct 14, 2013 at 4:34 PM, Jack Howarth <howarth at bromo.med.uc.edu>wrote:

> On Mon, Oct 14, 2013 at 03:37:22PM -0600, Charles R Harris wrote:
> > Hi All,
> >
> > NumPy 1.8.0rc2 is up now on
> > sourceforge<http://sourceforge.net/projects/numpy/files/NumPy/1.8.0rc2/
> >.
> > Binary builds are included, except for Python 3.3 on windows. Many thanks
> > to Ralf for the binaries and to those who found and fixed the bugs in
> rc1.
> > Please test this thoroughly, especially if you have access to one of the
> > less common platforms. Testing of rc1 turned up several bugs that would
> > have been a embarrassment if they had made their way into the release and
> > we are very happy that they were discovered.
> >
> > Chuck
>
> Chuck,
>    I can confirm that the numpy 1.8.0rc2 release eliminates the testsuite
> failures
> in scipy 0.13.0rc1 when built against it on x86_64-apple-darwin12
> producing...
>
> Running unit tests for scipy
> NumPy version 1.8.0rc2
> NumPy is installed in /sw/lib/python2.7/site-packages/numpy
> SciPy version 0.13.0rc1
> SciPy is installed in
> /sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy
> Python version 2.7.5 (default, Oct  9 2013, 13:51:44) [GCC 4.2.1
> Compatible Apple LLVM 5.0 (clang-500.2.75)]
> nose version 1.3.0
> /sw/lib/python2.7/site-packages/numpy/lib/utils.py:134:
> DeprecationWarning: `scipy.lib.blas` is deprecated, use `scipy.linalg.blas`
> instead!
>   warnings.warn(depdoc, DeprecationWarning)
> /sw/lib/python2.7/site-packages/numpy/lib/utils.py:134:
> DeprecationWarning: `scipy.lib.lapack` is deprecated, use
> `scipy.linalg.lapack` instead!
>   warnings.warn(depdoc, DeprecationWarning)
>
> ..............................................................................................................................................................................................................................K..................................................................................................................K.......................................................................................K..K.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
>  .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SSSSSS......SSSSSS......SSSS......................................................................................0-th
> dimension must be fixed to 3 but got 15
> ..0-th dimension must be fixed to 3 but got 5
> .......................S..........K..............................................................................................................................................................................................................................................................................................K.......................................................................................................................................................................................K..............................................................................SSSSSS............S............................................................./sw/lib/python2.7/site-packages/numpy/core/_methods.py:55:
> RuntimeWarning: Mean of empty slice.
>   warnings.warn("Mean of empty slice.", RuntimeWarning)
>
> ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................K.........................................................................................................................................................................................................................................................................................................................................................................................................................................................
>
>  .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SS..................
>
>  ..SSSSSSSSSS.......KKKSSS.S....KKK......S..K...KKK...KKK...............S..............SSSSS..SSSS.................................SS...............SSS.SSSSSSSSSS....SSSKKKSSS.S.SSSKKK......S...SSSKKKSSSKKK...........SSS.S..............SSSSS..SSSS.................................................................................KKKK..........KKKK...............KKKK....KKKK.....................................................................................................................................................................................................................................................................................................................................................................................................................KKKK..........KKKK...............KKKK....KKKK.......................................................................................................................................................................
>
>  ...............................................................................................................................................................................................SS............SSS.SSSSSSSSSS....SSSKKKSSS.S.SSSKKK......S...SSSKKKSSSKKK......S....SSS.S..............SSSSS..SSSS...............................K..S.SSS..........SSS.KKKKSKSSKS....SSSKKKSSS...SSSKKK..........SSSKKKSSSKKK......S.....SSS.S.........K.....KSSS...KSKS................................................SSS................SSSKKK......SSSKKK...........SSSKKK...SSSKKK......S....SSS............K...............................................................................................................................................................................................................................................................................................................................................................................................SSS...........
>  .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/special/_testutils.py:244:
> RuntimeWarning: invalid value encountered in greater
>   pinf_x = np.isinf(x) & (x > 0)
> /sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/special/_testutils.py:245:
> RuntimeWarning: invalid value encountered in greater
>   pinf_y = np.isinf(y) & (y > 0)
> /sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/special/_testutils.py:246:
> RuntimeWarning: invalid value encountered in less
>   minf_x = np.isinf(x) & (x < 0)
> /sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/special/_testutils.py:247:
> RuntimeWarning: invalid value encountered in less
>   minf_y = np.isinf(y) & (y < 0)
> .....................................................................................................................................................................................................................................................................................................................................................................................................................SSSSSSSS................................................../sw/lib/python2.7/site-packages/numpy/core/_methods.py:77:
> RuntimeWarning: Degrees of freedom <= 0 for slice
>   warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning)
> .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7208:
> RuntimeWarning: invalid value encountered in greater_equal
>   return where(temp >= q, vals1, vals)
> .............................................................................................../sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7584:
> RuntimeWarning: invalid value encountered in greater_equal
>   return where((temp >= q), vals1, vals)
> ............................./sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7357:
> DeprecationWarning: converting an array with ndim > 0 to an index will
> result in an error in the future
>   return (1-p)**(k-1) * p
> /sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7357:
> DeprecationWarning: converting an array with ndim > 0 to an index will
> result in an error in the future
>   return (1-p)**(k-1) * p
> ..../sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7525:
> DeprecationWarning: converting an array with ndim > 0 to an index will
> result in an error in the future
>   return -p**k * 1.0 / k / log(1 - p)
> /sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7525:
> DeprecationWarning: converting an array with ndim > 0 to an index will
> result in an error in the future
>   return -p**k * 1.0 / k / log(1 - p)
> /sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7525:
> DeprecationWarning: converting an array with ndim > 0 to an index will
> result in an error in the future
>   return -p**k * 1.0 / k / log(1 - p)
> /sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7525:
> DeprecationWarning: converting an array with ndim > 0 to an index will
> result in an error in the future
>   return -p**k * 1.0 / k / log(1 - p)
>
> ............S..........................................................................................S...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................K......................................................................................................
> ----------------------------------------------------------------------
> Ran 8931 tests in 160.354s
>
> OK (KNOWNFAIL=114, SKIP=210)
>
> ...when built against python 2.7.5 under fink.
>           Jack
>
> Thanks for the testing.

Chuck
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