[SciPy-Dev] NumPy 1.8.0rc2 release

[Jack Howarth]

On Mon, Oct 14, 2013 at 03:37:22PM -0600, Charles R Harris wrote:
> Hi All,
> 
> NumPy 1.8.0rc2 is up now on
> sourceforge<http://sourceforge.net/projects/numpy/files/NumPy/1.8.0rc2/>.
> Binary builds are included, except for Python 3.3 on windows. Many thanks
> to Ralf for the binaries and to those who found and fixed the bugs in rc1.
> Please test this thoroughly, especially if you have access to one of the
> less common platforms. Testing of rc1 turned up several bugs that would
> have been a embarrassment if they had made their way into the release and
> we are very happy that they were discovered.
> 
> Chuck

Chuck,
   I can confirm that the numpy 1.8.0rc2 release eliminates the testsuite failures
in scipy 0.13.0rc1 when built against it on x86_64-apple-darwin12 producing...

Running unit tests for scipy
NumPy version 1.8.0rc2
NumPy is installed in /sw/lib/python2.7/site-packages/numpy
SciPy version 0.13.0rc1
SciPy is installed in /sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy
Python version 2.7.5 (default, Oct  9 2013, 13:51:44) [GCC 4.2.1 Compatible Apple LLVM 5.0 (clang-500.2.75)]
nose version 1.3.0
/sw/lib/python2.7/site-packages/numpy/lib/utils.py:134: DeprecationWarning: `scipy.lib.blas` is deprecated, use `scipy.linalg.blas` instead!
  warnings.warn(depdoc, DeprecationWarning)
/sw/lib/python2.7/site-packages/numpy/lib/utils.py:134: DeprecationWarning: `scipy.lib.lapack` is deprecated, use `scipy.linalg.lapack` instead!
  warnings.warn(depdoc, DeprecationWarning)
..............................................................................................................................................................................................................................K..................................................................................................................K.......................................................................................K..K......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SSSSSS......SSSSSS......SSSS......................................................................................0-th dimension must be fixed to 3 but got 15
..0-th dimension must be fixed to 3 but got 5
.......................S..........K..............................................................................................................................................................................................................................................................................................K.......................................................................................................................................................................................K..............................................................................SSSSSS............S............................................................./sw/lib/python2.7/site-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice.
  warnings.warn("Mean of empty slice.", RuntimeWarning)
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................K..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SS....................SSSSSSSSSS.......KKKSSS.S....KKK......S..K...KKK...KKK...............S..............SSSSS..SSSS.................................SS...............SSS.SSSSSSSSSS....SSSKKKSSS.S.SSSKKK......S...SSSKKKSSSKKK...........SSS.S..............SSSSS..SSSS.................................................................................KKKK..........KKKK...............KKKK....KKKK.....................................................................................................................................................................................................................................................................................................................................................................................................................KKKK..........KKKK...............KKKK....KKKK......................................................................................................................................................................................................................................................................................................................................................................SS............SSS.SSSSSSSSSS....SSSKKKSSS.S.SSSKKK......S...SSSKKKSSSKKK......S....SSS.S..............SSSSS..SSSS...............................K..S.SSS..........SSS.KKKKSKSSKS....SSSKKKSSS...SSSKKK..........SSSKKKSSSKKK......S.....SSS.S.........K.....KSSS...KSKS................................................SSS................SSSKKK......SSSKKK...........SSSKKK...SSSKKK......S....SSS............K...............................................................................................................................................................................................................................................................................................................................................................................................SSS............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/special/_testutils.py:244: RuntimeWarning: invalid value encountered in greater
  pinf_x = np.isinf(x) & (x > 0)
/sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/special/_testutils.py:245: RuntimeWarning: invalid value encountered in greater
  pinf_y = np.isinf(y) & (y > 0)
/sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/special/_testutils.py:246: RuntimeWarning: invalid value encountered in less
  minf_x = np.isinf(x) & (x < 0)
/sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/special/_testutils.py:247: RuntimeWarning: invalid value encountered in less
  minf_y = np.isinf(y) & (y < 0)
.....................................................................................................................................................................................................................................................................................................................................................................................................................SSSSSSSS................................................../sw/lib/python2.7/site-packages/numpy/core/_methods.py:77: RuntimeWarning: Degrees of freedom <= 0 for slice
  warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning)
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7208: RuntimeWarning: invalid value encountered in greater_equal
  return where(temp >= q, vals1, vals)
.............................................................................................../sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7584: RuntimeWarning: invalid value encountered in greater_equal
  return where((temp >= q), vals1, vals)
............................./sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7357: DeprecationWarning: converting an array with ndim > 0 to an index will result in an error in the future
  return (1-p)**(k-1) * p
/sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7357: DeprecationWarning: converting an array with ndim > 0 to an index will result in an error in the future
  return (1-p)**(k-1) * p
..../sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7525: DeprecationWarning: converting an array with ndim > 0 to an index will result in an error in the future
  return -p**k * 1.0 / k / log(1 - p)
/sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7525: DeprecationWarning: converting an array with ndim > 0 to an index will result in an error in the future
  return -p**k * 1.0 / k / log(1 - p)
/sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7525: DeprecationWarning: converting an array with ndim > 0 to an index will result in an error in the future
  return -p**k * 1.0 / k / log(1 - p)
/sw/src/fink.build/root-scipy-py27-0.13.0rc1-0/sw/lib/python2.7/site-packages/scipy/stats/distributions.py:7525: DeprecationWarning: converting an array with ndim > 0 to an index will result in an error in the future
  return -p**k * 1.0 / k / log(1 - p)
............S..........................................................................................S...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................K......................................................................................................
----------------------------------------------------------------------
Ran 8931 tests in 160.354s

OK (KNOWNFAIL=114, SKIP=210)

...when built against python 2.7.5 under fink.
          Jack

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