[Numpy-discussion] building 1.1.0 on 64bit, seems to be stuck on infinite loop or something
Charles Doutriaux
doutriaux1 at llnl.gov
Tue Jun 17 17:44:48 EDT 2008
Just so it might help debuging, when i kill it i get:
_exec_command_posix failed (status=2)
C.
Charles Doutriaux wrote:
> Hello,
>
> I'm trying to build 1.1.0 on a:
> Linux thunder0 2.6.9-74chaos #1 SMP Wed Oct 24 08:41:12 PDT 2007 ia64
> ia64 ia64 GNU/Linux
>
> using python 2.5 (latest stable)
>
> It seems to be stuck forever at the end of that output:
>
> anybody ran into this?
>
> ~/CDAT/5.0.0.beta1/bin/python setup.py install
> Running from numpy source directory.
> F2PY Version 2_5237
> blas_opt_info:
> blas_mkl_info:
> libraries mkl,vml,guide not found in /g/g90/cdoutrix/CDAT/Externals/lib
> NOT AVAILABLE
>
> atlas_blas_threads_info:
> Setting PTATLAS=ATLAS
> libraries ptf77blas,ptcblas,atlas not found in
> /g/g90/cdoutrix/CDAT/Externals/lib
> NOT AVAILABLE
>
> atlas_blas_info:
> libraries f77blas,cblas,atlas not found in
> /g/g90/cdoutrix/CDAT/Externals/lib
> NOT AVAILABLE
>
> /g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1340:
> UserWarning:
> Atlas (http://math-atlas.sourceforge.net/) libraries not found.
> Directories to search for the libraries can be specified in the
> numpy/distutils/site.cfg file (section [atlas]) or by setting
> the ATLAS environment variable.
> warnings.warn(AtlasNotFoundError.__doc__)
> blas_info:
> libraries blas not found in /g/g90/cdoutrix/CDAT/Externals/lib
> NOT AVAILABLE
>
> /g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1349:
> UserWarning:
> Blas (http://www.netlib.org/blas/) libraries not found.
> Directories to search for the libraries can be specified in the
> numpy/distutils/site.cfg file (section [blas]) or by setting
> the BLAS environment variable.
> warnings.warn(BlasNotFoundError.__doc__)
> blas_src_info:
> NOT AVAILABLE
>
> /g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1352:
> UserWarning:
> Blas (http://www.netlib.org/blas/) sources not found.
> Directories to search for the sources can be specified in the
> numpy/distutils/site.cfg file (section [blas_src]) or by setting
> the BLAS_SRC environment variable.
> warnings.warn(BlasSrcNotFoundError.__doc__)
> NOT AVAILABLE
>
> lapack_opt_info:
> lapack_mkl_info:
> mkl_info:
> libraries mkl,vml,guide not found in /g/g90/cdoutrix/CDAT/Externals/lib
> NOT AVAILABLE
>
> NOT AVAILABLE
>
> atlas_threads_info:
> Setting PTATLAS=ATLAS
> libraries ptf77blas,ptcblas,atlas not found in
> /g/g90/cdoutrix/CDAT/Externals/lib
> libraries lapack_atlas not found in /g/g90/cdoutrix/CDAT/Externals/lib
> numpy.distutils.system_info.atlas_threads_info
> NOT AVAILABLE
>
> atlas_info:
> libraries f77blas,cblas,atlas not found in
> /g/g90/cdoutrix/CDAT/Externals/lib
> libraries lapack_atlas not found in /g/g90/cdoutrix/CDAT/Externals/lib
> numpy.distutils.system_info.atlas_info
> NOT AVAILABLE
>
> /g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1247:
> UserWarning:
> Atlas (http://math-atlas.sourceforge.net/) libraries not found.
> Directories to search for the libraries can be specified in the
> numpy/distutils/site.cfg file (section [atlas]) or by setting
> the ATLAS environment variable.
> warnings.warn(AtlasNotFoundError.__doc__)
> lapack_info:
> libraries lapack not found in /g/g90/cdoutrix/CDAT/Externals/lib
> NOT AVAILABLE
>
> /g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1258:
> UserWarning:
> Lapack (http://www.netlib.org/lapack/) libraries not found.
> Directories to search for the libraries can be specified in the
> numpy/distutils/site.cfg file (section [lapack]) or by setting
> the LAPACK environment variable.
> warnings.warn(LapackNotFoundError.__doc__)
> lapack_src_info:
> NOT AVAILABLE
>
> /g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1261:
> UserWarning:
> Lapack (http://www.netlib.org/lapack/) sources not found.
> Directories to search for the sources can be specified in the
> numpy/distutils/site.cfg file (section [lapack_src]) or by setting
> the LAPACK_SRC environment variable.
> warnings.warn(LapackSrcNotFoundError.__doc__)
> NOT AVAILABLE
>
> running install
> running build
> running scons
> customize UnixCCompiler
> Found executable /usr/local/bin/gcc
> customize GnuFCompiler
> Found executable /usr/local/bin/g77
> gnu: no Fortran 90 compiler found
> gnu: no Fortran 90 compiler found
> customize GnuFCompiler
> gnu: no Fortran 90 compiler found
> gnu: no Fortran 90 compiler found
> customize UnixCCompiler
> customize UnixCCompiler using scons
> running config_cc
> unifing config_cc, config, build_clib, build_ext, build commands
> --compiler options
> running config_fc
> unifing config_fc, config, build_clib, build_ext, build commands
> --fcompiler options
> running build_src
> building py_modules sources
> building extension "numpy.core.multiarray" sources
> adding 'build/src.linux-ia64-2.5/numpy/core/config.h' to sources.
> adding 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h' to sources.
> executing numpy/core/code_generators/generate_array_api.py
> adding 'build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h' to
> sources.
> adding 'build/src.linux-ia64-2.5/numpy/core/src' to include_dirs.
> numpy.core - nothing done with h_files =
> ['build/src.linux-ia64-2.5/numpy/core/src/scalartypes.inc',
> 'build/src.linux-ia64-2.5/numpy/core/src/arraytypes.inc',
> 'build/src.linux-ia64-2.5/numpy/core/config.h',
> 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h',
> 'build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h']
> building extension "numpy.core.umath" sources
> adding 'build/src.linux-ia64-2.5/numpy/core/config.h' to sources.
> adding 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h' to sources.
> executing numpy/core/code_generators/generate_ufunc_api.py
> adding 'build/src.linux-ia64-2.5/numpy/core/__ufunc_api.h' to sources.
> adding 'build/src.linux-ia64-2.5/numpy/core/src' to include_dirs.
> numpy.core - nothing done with h_files =
> ['build/src.linux-ia64-2.5/numpy/core/src/scalartypes.inc',
> 'build/src.linux-ia64-2.5/numpy/core/src/arraytypes.inc',
> 'build/src.linux-ia64-2.5/numpy/core/config.h',
> 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h',
> 'build/src.linux-ia64-2.5/numpy/core/__ufunc_api.h']
> building extension "numpy.core._sort" sources
> adding 'build/src.linux-ia64-2.5/numpy/core/config.h' to sources.
> adding 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h' to sources.
> executing numpy/core/code_generators/generate_array_api.py
> adding 'build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h' to
> sources.
> numpy.core - nothing done with h_files =
> ['build/src.linux-ia64-2.5/numpy/core/config.h',
> 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h','build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h']
> building extension "numpy.core.scalarmath" sources
> adding 'build/src.linux-ia64-2.5/numpy/core/config.h' to sources.
> adding 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h' to sources.
> executing numpy/core/code_generators/generate_array_api.py
> adding 'build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h' to
> sources.
> executing numpy/core/code_generators/generate_ufunc_api.py
> adding 'build/src.linux-ia64-2.5/numpy/core/__ufunc_api.h' to sources.
> numpy.core - nothing done with h_files =
> ['build/src.linux-ia64-2.5/numpy/core/config.h',
> 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h','build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h',
> 'build/src.linux-ia64-2.5/numpy/core/__ufunc_api.h']
> building extension "numpy.core._dotblas" sources
> building extension "numpy.lib._compiled_base" sources
> building extension "numpy.numarray._capi" sources
> building extension "numpy.fft.fftpack_lite" sources
> building extension "numpy.linalg.lapack_lite" sources
> ### Warning: Using unoptimized lapack ###
> adding 'numpy/linalg/lapack_litemodule.c' to sources.
> adding 'numpy/linalg/python_xerbla.c' to sources.
> adding 'numpy/linalg/zlapack_lite.c' to sources.
> adding 'numpy/linalg/dlapack_lite.c' to sources.
> adding 'numpy/linalg/blas_lite.c' to sources.
> adding 'numpy/linalg/dlamch.c' to sources.
> adding 'numpy/linalg/f2c_lite.c' to sources.
> building extension "numpy.random.mtrand" sources
> customize GnuFCompiler
> gnu: no Fortran 90 compiler found
> gnu: no Fortran 90 compiler found
> customize GnuFCompiler
> gnu: no Fortran 90 compiler found
> gnu: no Fortran 90 compiler found
> customize GnuFCompiler using config
> C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall
> -Wstrict-prototypes -fPIC
>
> compile options: '-Inumpy/core/src -Inumpy/core/include
> -I/g/g90/cdoutrix/CDAT/5.0.0.beta1/include/python2.5
> -I/g/g90/cdoutrix/CDAT/5.0.0.beta1/include/python2.5 -c'
> gcc: _configtest.c
> gcc _configtest.o -o _configtest
> _configtest
> failure.
> removing: _configtest.c _configtest.o _configtest
> building data_files sources
> running build_py
> copying build/src.linux-ia64-2.5/numpy/__config__.py ->
> build/lib.linux-ia64-2.5/numpy
> copying build/src.linux-ia64-2.5/numpy/distutils/__config__.py ->
> build/lib.linux-ia64-2.5/numpy/distutils
> running build_ext
> customize UnixCCompiler
> customize UnixCCompiler using build_ext
> building 'numpy.random.mtrand' extension
> compiling C sources
> C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall
> -Wstrict-prototypes -fPIC
>
> compile options: '-Inumpy/core/include
> -Ibuild/src.linux-ia64-2.5/numpy/core -Inumpy/core/src
> -Inumpy/core/include
> -I/g/g90/cdoutrix/CDAT/5.0.0.beta1/include/python2.5
> -I/g/g90/cdoutrix/CDAT/5.0.0.beta1/include/python2.5 -c'
> gcc: numpy/random/mtrand/mtrand.c
>
>
>
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