[Numpy-discussion] building 1.1.0 on 64bit, seems to be stuck on infinite loop or something

Tue Jun 17 17:40:00 EDT 2008

Hello,

I'm trying to build 1.1.0 on a:
Linux thunder0 2.6.9-74chaos #1 SMP Wed Oct 24 08:41:12 PDT 2007 ia64 
ia64 ia64 GNU/Linux

using python 2.5 (latest stable)

It seems to be stuck forever at the end of that output:

anybody ran into this?

~/CDAT/5.0.0.beta1/bin/python setup.py install
Running from numpy source directory.
F2PY Version 2_5237
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in /g/g90/cdoutrix/CDAT/Externals/lib
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in 
/g/g90/cdoutrix/CDAT/Externals/lib
  NOT AVAILABLE

atlas_blas_info:
  libraries f77blas,cblas,atlas not found in 
/g/g90/cdoutrix/CDAT/Externals/lib
  NOT AVAILABLE

/g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1340: 
UserWarning:
    Atlas (http://math-atlas.sourceforge.net/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [atlas]) or by setting
    the ATLAS environment variable.
  warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
  libraries blas not found in /g/g90/cdoutrix/CDAT/Externals/lib
  NOT AVAILABLE

/g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1349: 
UserWarning:
    Blas (http://www.netlib.org/blas/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [blas]) or by setting
    the BLAS environment variable.
  warnings.warn(BlasNotFoundError.__doc__)
blas_src_info:
  NOT AVAILABLE

/g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1352: 
UserWarning:
    Blas (http://www.netlib.org/blas/) sources not found.
    Directories to search for the sources can be specified in the
    numpy/distutils/site.cfg file (section [blas_src]) or by setting
    the BLAS_SRC environment variable.
  warnings.warn(BlasSrcNotFoundError.__doc__)
  NOT AVAILABLE

lapack_opt_info:
lapack_mkl_info:
mkl_info:
  libraries mkl,vml,guide not found in /g/g90/cdoutrix/CDAT/Externals/lib
  NOT AVAILABLE

  NOT AVAILABLE

atlas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in 
/g/g90/cdoutrix/CDAT/Externals/lib
  libraries lapack_atlas not found in /g/g90/cdoutrix/CDAT/Externals/lib
numpy.distutils.system_info.atlas_threads_info
  NOT AVAILABLE

atlas_info:
  libraries f77blas,cblas,atlas not found in 
/g/g90/cdoutrix/CDAT/Externals/lib
  libraries lapack_atlas not found in /g/g90/cdoutrix/CDAT/Externals/lib
numpy.distutils.system_info.atlas_info
  NOT AVAILABLE

/g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1247: 
UserWarning:
    Atlas (http://math-atlas.sourceforge.net/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [atlas]) or by setting
    the ATLAS environment variable.
  warnings.warn(AtlasNotFoundError.__doc__)
lapack_info:
  libraries lapack not found in /g/g90/cdoutrix/CDAT/Externals/lib
  NOT AVAILABLE

/g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1258: 
UserWarning:
    Lapack (http://www.netlib.org/lapack/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [lapack]) or by setting
    the LAPACK environment variable.
  warnings.warn(LapackNotFoundError.__doc__)
lapack_src_info:
  NOT AVAILABLE

/g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1261: 
UserWarning:
    Lapack (http://www.netlib.org/lapack/) sources not found.
    Directories to search for the sources can be specified in the
    numpy/distutils/site.cfg file (section [lapack_src]) or by setting
    the LAPACK_SRC environment variable.
  warnings.warn(LapackSrcNotFoundError.__doc__)
  NOT AVAILABLE

running install
running build
running scons
customize UnixCCompiler
Found executable /usr/local/bin/gcc
customize GnuFCompiler
Found executable /usr/local/bin/g77
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize UnixCCompiler
customize UnixCCompiler using scons
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands 
--compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands 
--fcompiler options
running build_src
building py_modules sources
building extension "numpy.core.multiarray" sources
  adding 'build/src.linux-ia64-2.5/numpy/core/config.h' to sources.
  adding 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_array_api.py
  adding 'build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h' to 
sources.
  adding 'build/src.linux-ia64-2.5/numpy/core/src' to include_dirs.
numpy.core - nothing done with h_files = 
['build/src.linux-ia64-2.5/numpy/core/src/scalartypes.inc', 
'build/src.linux-ia64-2.5/numpy/core/src/arraytypes.inc', 
'build/src.linux-ia64-2.5/numpy/core/config.h', 
'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h', 
'build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h']
building extension "numpy.core.umath" sources
  adding 'build/src.linux-ia64-2.5/numpy/core/config.h' to sources.
  adding 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
  adding 'build/src.linux-ia64-2.5/numpy/core/__ufunc_api.h' to sources.
  adding 'build/src.linux-ia64-2.5/numpy/core/src' to include_dirs.
numpy.core - nothing done with h_files = 
['build/src.linux-ia64-2.5/numpy/core/src/scalartypes.inc', 
'build/src.linux-ia64-2.5/numpy/core/src/arraytypes.inc', 
'build/src.linux-ia64-2.5/numpy/core/config.h', 
'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h', 
'build/src.linux-ia64-2.5/numpy/core/__ufunc_api.h']
building extension "numpy.core._sort" sources
  adding 'build/src.linux-ia64-2.5/numpy/core/config.h' to sources.
  adding 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_array_api.py
  adding 'build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h' to 
sources.
numpy.core - nothing done with h_files = 
['build/src.linux-ia64-2.5/numpy/core/config.h', 
'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h','build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h']
building extension "numpy.core.scalarmath" sources
  adding 'build/src.linux-ia64-2.5/numpy/core/config.h' to sources.
  adding 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_array_api.py
  adding 'build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h' to 
sources.
executing numpy/core/code_generators/generate_ufunc_api.py
  adding 'build/src.linux-ia64-2.5/numpy/core/__ufunc_api.h' to sources.
numpy.core - nothing done with h_files = 
['build/src.linux-ia64-2.5/numpy/core/config.h', 
'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h','build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h', 
'build/src.linux-ia64-2.5/numpy/core/__ufunc_api.h']
building extension "numpy.core._dotblas" sources
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
### Warning:  Using unoptimized lapack ###
  adding 'numpy/linalg/lapack_litemodule.c' to sources.
  adding 'numpy/linalg/python_xerbla.c' to sources.
  adding 'numpy/linalg/zlapack_lite.c' to sources.
  adding 'numpy/linalg/dlapack_lite.c' to sources.
  adding 'numpy/linalg/blas_lite.c' to sources.
  adding 'numpy/linalg/dlamch.c' to sources.
  adding 'numpy/linalg/f2c_lite.c' to sources.
building extension "numpy.random.mtrand" sources
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using config
C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall 
-Wstrict-prototypes -fPIC

compile options: '-Inumpy/core/src -Inumpy/core/include 
-I/g/g90/cdoutrix/CDAT/5.0.0.beta1/include/python2.5 
-I/g/g90/cdoutrix/CDAT/5.0.0.beta1/include/python2.5 -c'
gcc: _configtest.c
gcc _configtest.o -o _configtest
_configtest
failure.
removing: _configtest.c _configtest.o _configtest
building data_files sources
running build_py
copying build/src.linux-ia64-2.5/numpy/__config__.py -> 
build/lib.linux-ia64-2.5/numpy
copying build/src.linux-ia64-2.5/numpy/distutils/__config__.py -> 
build/lib.linux-ia64-2.5/numpy/distutils
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'numpy.random.mtrand' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall 
-Wstrict-prototypes -fPIC

compile options: '-Inumpy/core/include 
-Ibuild/src.linux-ia64-2.5/numpy/core -Inumpy/core/src 
-Inumpy/core/include 
-I/g/g90/cdoutrix/CDAT/5.0.0.beta1/include/python2.5 
-I/g/g90/cdoutrix/CDAT/5.0.0.beta1/include/python2.5 -c'
gcc: numpy/random/mtrand/mtrand.c