[SciPy-User] How to fix Aborted SciPy version 0.16.0b2 test ?

[Ralf Gommers]

On Tue, Jul 21, 2015 at 9:39 PM, Sergio Rojas <sergio_r at mail.com> wrote:

> Hello all,
>
> Runing on Ubuntu 14.04 LTS and under Python 3.5.0b3 and NumPy version
> 1.9.2, the
> SciPy (version 0.16.0b2) test is aborting at
>
> #------------
> test_interpolative.TestInterpolativeDecomposition.test_badcall ... ok
> test_interpolative.TestInterpolativeDecomposition.test_id(<class
> 'numpy.float64'>,) ... *** Error in `python3': free(): invalid next size
> (normal): 0x00000000039e1f60 ***
> Aborted
>  #------------
>
>  would it be possible to fix it?
>

Hi Sergio, thanks for the report. A few questions:
- did 0.15.1 work for you with the same install method
- does the problem still occur with the final 0.16.0 release?
- is the issue specific to Python 3.5 or not?


Opening an issue on Github and attaching a gdb traceback (see
http://scipy.org/bug-report.html) would be helpful.

Cheers,
Ralf



>
> Thanks in advance for your help,
>
> Sergio
> PD. Some extra info is as follows:
>
>  $ python3 Python 3.5.0b3 (default, Jul 21 2015, 12:33:54)
> [GCC 4.8.4] on linux
> Type "help", "copyright", "credits" or "license" for more information.
> >>> import scipy
> >>> scipy.show_config()
> blas_mkl_info:
>   NOT AVAILABLE
> atlas_3_10_threads_info:
>     libraries = ['tatlas', 'tatlas', 'tatlas']
>     define_macros = [('ATLAS_INFO', '"\\"3.11.34\\""')]
>     include_dirs = ['/home/myProg/NumLibs64b/include']
>     library_dirs = ['/home/myProg/NumLibs64b/lib']
>     language = f77
> openblas_lapack_info:
>   NOT AVAILABLE
> lapack_mkl_info:
>   NOT AVAILABLE
> openblas_info:
>   NOT AVAILABLE
> mkl_info:
>   NOT AVAILABLE
>  lapack_opt_info:
>     libraries = ['tatlas', 'tatlas', 'tatlas']
>     define_macros = [('ATLAS_INFO', '"\\"3.11.34\\""')]
>     include_dirs = ['/home/myProg/NumLibs64b/include']
>     library_dirs = ['/home/myProg/NumLibs64b/lib']
>     language = f77
> atlas_3_10_blas_threads_info:
>     libraries = ['tatlas']
>     define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO',
> '"\\"3.11.34\\""')]
>     include_dirs = ['/home/myProg/NumLibs64b/include']
>     library_dirs = ['/home/myProg/NumLibs64b/lib']
>     language = c
> blas_opt_info:
>     libraries = ['tatlas']
>     define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO',
> '"\\"3.11.34\\""')]
>     include_dirs = ['/home/myProg/NumLibs64b/include']
>     library_dirs = ['/home/myProg/NumLibs64b/lib']
>     language = c
> >>> scipy.test('full', verbose=2)
> Running unit tests for scipy
> NumPy version 1.9.2
>  NumPy is installed in
> /home/myProg/PythonGnu350/Linux64b/lib/python3.5/site-packages/numpy
> SciPy version 0.16.0b2
> SciPy is installed in
> /home/myProg/PythonGnu350/Linux64b/lib/python3.5/site-packages/scipy
> Python version 3.5.0b3 (default, Jul 21 2015, 12:33:54) [GCC 4.8.4]
> nose version 1.3.7
> /home/myProg/PythonGnu350/Linux64b/lib/python3.5/site-packages/scipy/_lib/decorator.py:205:
> DeprecationWarning: inspect.getargspec() is deprecated, use
> inspect.signature() instead
> ...
> ...
> test_y_bad_size (test_fblas.TestZswap) ... ok
> test_y_stride (test_fblas.TestZswap) ... ok
> test_interpolative.TestInterpolativeDecomposition.test_badcall ... ok
> test_interpolative.TestInterpolativeDecomposition.test_id(<class
> 'numpy.float64'>,) ... *** Error in `python3': free(): invalid next size
> (normal): 0x00000000039e1f60 ***
> Aborted
>
>
>
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