[SciPy-User] problem with loading data from data_store
Ralf Gommers
ralf.gommers at googlemail.com
Sun Mar 25 16:55:22 EDT 2012
On Thu, Mar 22, 2012 at 10:33 PM, Ryan Krauss <ryanlists at gmail.com> wrote:
> I have some data sets stored using scipy.io.save_as_module. I
> recently upgrade to 0.10 and I can no longer open this module.
> Further, I tried to reprocess my data and resave it and I am still
> getting the same error message. Just a couple of lines are needed to
> recreate my problem:
>
> mydict = {'a':12.34}
> scipy.io.save_as_module('mymod',mydict)
> import mymod
>
> The response to the last command (import) is
>
> In [18]: import mymod
> ---------------------------------------------------------------------------
> AttributeError Traceback (most recent call last)
>
> /home/ryan/siue/Research/modeling/SFLR/system_ID/TMM/TMM_SFLR_model1.py
> in <module>()
> ----> 1
> 2
> 3
> 4
> 5
>
> /home/ryan/siue/Research/modeling/SFLR/system_ID/TMM/mymod.py in <module>()
> 1 import scipy.io.data_store as data_store
> 2 import mymod
> ----> 3 data_store._load(mymod)
> 4
> 5
>
> AttributeError: 'module' object has no attribute '_load'
>
>
> Can anyone help me with this?
>
You can add this in scipy/io/data_store.py:
def _load(module):
""" Load data into module from a shelf with
the same name as the module.
"""
dir,filename = os.path.split(module.__file__)
filebase = filename.split('.')[0]
fn = os.path.join(dir, filebase)
f = dumb_shelve.open(fn, "r")
#exec( 'import ' + module.__name__)
for i in f.keys():
exec( 'import ' + module.__name__+ ';' +
module.__name__+'.'+i + '=' + 'f["' + i + '"]')
This was caused by an incorrect removal of deprecated code in
https://github.com/scipy/scipy/commit/329a5e2713. So apparently
save_as_module() has been completely broken for 2 years without anyone
noticing.....
Proposal: fix save_as_module now so it can load data again, deprecate it
for 0.11 and remove it for 0.12.
Ralf
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