[SciPy-User] Installing Scipy from source

Jorge Garcia jgarc063 at fiu.edu
Mon Jan 31 17:08:04 EST 2011 

I know it's probably a stupid questions but I can't get the scipy module to
properly install on my Ubuntu 10.04 machine. I already have Numpy working so
I don't think that's the problem. I'm not going to be doing anything to
crazy so I don't really need ATLAS or BLAS.

Here's the output that I get when I run the setup.py file. I'm using Python
3.1.2, and the modules work on my Windows machine so I don't think it's a
Python 3 problem.

RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/linalg/tests/test_interface.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/benchmarks/bench_sparse.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/sparsetools/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/sparsetools/csc.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/sparsetools/csgraph.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/sparsetools/coo.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/sparsetools/csr.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/sparsetools/bsr.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/sparsetools/dia.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/tests/test_construct.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/tests/test_spfuncs.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/tests/test_extract.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/tests/test_base.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/stats.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/kde.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/vonmises.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/_support.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/mstats_basic.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/distributions.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/rv.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/mstats.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/morestats.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/mstats_extras.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/tests/test_distributions.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/tests/test_mstats_basic.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/tests/test_continuous_extra.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/tests/test_continuous_basic.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/tests/test_mstats_extras.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/tests/test_stats.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/tests/test_kdeoth.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/tests/test_morestats.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/tests/test_fit.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/tests/test_discrete_basic.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/odepack.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/quadrature.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/quadpack.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/ode.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/tests/test_quadrature.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/tests/test_integrate.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/tests/test_quadpack.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/constants/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/constants/constants.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/constants/codata.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/spatial/generate_qhull.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/spatial/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/spatial/kdtree.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/spatial/distance.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/spatial/tests/test_kdtree.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/spatial/tests/test_distance.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/spatial/tests/test_qhull.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/morphology.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/_ni_support.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/measurements.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/io.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/filters.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/fourier.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/interpolation.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/tests/test_ndimage.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/tests/test_filters.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/tests/test_io.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/tests/test_measurements.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/blas/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/blas/scons_support.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/blas/tests/test_fblas.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/lapack/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/lapack/scons_support.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/lapack/tests/test_esv.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/lapack/tests/test_lapack.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/lapack/tests/common.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/lapack/tests/test_gesv.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/interpolate.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/fitpack2.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/ndgriddata.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/rbf.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/fitpack.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/polyint.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/interpolate_wrapper.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/generate_interpnd.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/interpnd_info.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/tests/test_polyint.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/tests/test_regression.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/tests/test_ndgriddata.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/tests/test_rbf.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/tests/test_interpolate_wrapper.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/tests/test_interpolate.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/tests/test_fitpack.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/tests/test_interpnd.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/odr/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/odr/odrpack.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/odr/models.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/odr/tests/test_odr.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/mmio.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/wavfile.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/data_store.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/dumb_shelve.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/netcdf.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/dumbdbm_patched.py
RefactoringTool: /home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/idl.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/mio5.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/mio5_params.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/mio4.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/miobase.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/byteordercodes.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/mio.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/benchmarks/bench_structarr.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/tests/test_mio.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/tests/test_mio5_utils.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/tests/test_streams.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/tests/test_pathological.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/tests/test_mio_funcs.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/arff/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/arff/arffread.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/arff/utils.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/arff/tests/test_arffread.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/tests/test_idl.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/tests/test_netcdf.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/tests/test_wavfile.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/tests/test_mmio.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/optimize.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/__init__.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/nonlin.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/lbfgsb.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/slsqp.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/nnls.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/cobyla.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/anneal.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/zeros.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/linesearch.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/tnc.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/minpack.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/_tstutils.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/benchmarks/bench_zeros.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/tests/test_regression.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/tests/test_cobyla.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/tests/test_minpack.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/tests/test_linesearch.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/tests/test_slsqp.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/tests/test_optimize.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/tests/test_nonlin.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/tests/test_zeros.py
RefactoringTool: Warnings/messages while refactoring:
RefactoringTool: ### In file
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/weave/c_spec.py ###
RefactoringTool: Line 380: absolute and local imports together
RefactoringTool: ### In file
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/weave/blitz_tools.py ###
RefactoringTool: Line 36: could not convert: raise "inputs failed to pass
size check."
RefactoringTool: Python 3 does not support string exceptions
RefactoringTool: ### In file
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/weave/ast_tools.py ###
RefactoringTool: Line 183: cannot convert map(None, ...) with multiple
arguments because map() now truncates to the shortest sequence
RefactoringTool: ### In file
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/weave/bytecodecompiler.py
###
RefactoringTool: Line 150: cannot convert map(None, ...) with multiple
arguments because map() now truncates to the shortest sequence
RefactoringTool: ### In file
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/weave/bytecodecompiler.py
###
RefactoringTool: Line 242: could not convert: raise "Executing code failed."
RefactoringTool: Python 3 does not support string exceptions
RefactoringTool: Line 1157: cannot convert map(None, ...) with multiple
arguments because map() now truncates to the shortest sequence
RefactoringTool: Line 1157: cannot convert map(None, ...) with multiple
arguments because map() now truncates to the shortest sequence
RefactoringTool: ### In file
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/fitpack.py ###
RefactoringTool: Line 1173: cannot convert map(None, ...) with multiple
arguments because map() now truncates to the shortest sequence
RefactoringTool: Skipping implicit fixer: buffer
RefactoringTool: Skipping implicit fixer: idioms
RefactoringTool: Skipping implicit fixer: set_literal
RefactoringTool: Skipping implicit fixer: ws_comma
RefactoringTool: Refactored
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/linalg/setup.py
RefactoringTool: No changes to
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/special/setup.py
RefactoringTool: No changes to
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/cluster/setup.py
RefactoringTool: No changes to
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/linalg/dsolve/umfpack/setup.py
RefactoringTool: No changes to
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/linalg/isolve/setup.py
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/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/linalg/eigen/arpack/setup.py
RefactoringTool: Refactored
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/setup.py
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/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/spatial/setup.py
RefactoringTool: Refactored
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/blas/setup.py
RefactoringTool: Refactored
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/lapack/setup.py
RefactoringTool: Files that were modified:
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/linalg/setup.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/special/setup.py
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/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/cluster/setup.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/linalg/dsolve/umfpack/setup.py
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/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/linalg/isolve/setup.py
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/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/linalg/eigen/arpack/setup.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/setup.py
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/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/spatial/setup.py
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/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/blas/setup.py
RefactoringTool:
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/lapack/setup.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/linalg/lapack.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/linalg/flinalg.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/linalg/basic.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/linalg/decomp.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/special/__init__.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/special/orthogonal.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/special/basic.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/signal/__init__.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/signal/signaltools.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/signal/bsplines.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/signal/fir_filter_design.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/fftpack/pseudo_diffs.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/fftpack/basic.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/cluster/__init__.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/cluster/hierarchy.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/cluster/vq.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/linalg/dsolve/linsolve.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/linalg/dsolve/umfpack/umfpack.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/linalg/isolve/iterative.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/sparse/linalg/eigen/arpack/arpack.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/stats.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/kde.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/mstats_basic.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/distributions.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/stats/morestats.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/odepack.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/quadpack.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/integrate/ode.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/spatial/__init__.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/spatial/distance.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/morphology.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/measurements.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/filters.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/fourier.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/ndimage/interpolation.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/blas/__init__.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/lib/lapack/__init__.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/interpolate.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/fitpack2.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/ndgriddata.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/fitpack.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/interpolate/interpolate_wrapper.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/__init__.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/mio5.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/mio5_params.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/mio4.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/io/matlab/miobase.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/lbfgsb.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/slsqp.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/nnls.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/cobyla.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/zeros.py
/home/cadsoft/src/scipy-0.9.0rc1/build/py3k/scipy/optimize/minpack.py
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/atlas
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/sse2
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib
  NOT AVAILABLE

atlas_blas_info:
  libraries f77blas,cblas,atlas not found in /usr/local/lib
  libraries f77blas,cblas,atlas not found in /usr/lib/atlas
  libraries f77blas,cblas,atlas not found in /usr/lib/sse2
  libraries f77blas,cblas,atlas not found in /usr/lib
  NOT AVAILABLE

Warning: No configuration returned, assuming
unavailable./usr/local/lib/python3.1/dist-packages/numpy/distutils/system_info.py:1399:
UserWarning:
    Atlas (http://math-atlas.sourceforge.net/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [atlas]) or by setting
    the ATLAS environment variable.
  warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
  libraries blas not found in /usr/local/lib
  libraries blas not found in /usr/lib
  NOT AVAILABLE

/usr/local/lib/python3.1/dist-packages/numpy/distutils/system_info.py:1408:
UserWarning:
    Blas (http://www.netlib.org/blas/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [blas]) or by setting
    the BLAS environment variable.
  warnings.warn(BlasNotFoundError.__doc__)
blas_src_info:
  NOT AVAILABLE

/usr/local/lib/python3.1/dist-packages/numpy/distutils/system_info.py:1411:
UserWarning:
    Blas (http://www.netlib.org/blas/) sources not found.
    Directories to search for the sources can be specified in the
    numpy/distutils/site.cfg file (section [blas_src]) or by setting
    the BLAS_SRC environment variable.
  warnings.warn(BlasSrcNotFoundError.__doc__)
Traceback (most recent call last):
  File "setup.py", line 180, in <module>
    setup_package()
  File "setup.py", line 172, in setup_package
    configuration=configuration )
  File "/usr/local/lib/python3.1/dist-packages/numpy/distutils/core.py",
line 152, in setup
    config = configuration()
  File "setup.py", line 121, in configuration
    config.add_subpackage('scipy')
  File
"/usr/local/lib/python3.1/dist-packages/numpy/distutils/misc_util.py", line
972, in add_subpackage
    caller_level = 2)
  File
"/usr/local/lib/python3.1/dist-packages/numpy/distutils/misc_util.py", line
941, in get_subpackage
    caller_level = caller_level + 1)
  File
"/usr/local/lib/python3.1/dist-packages/numpy/distutils/misc_util.py", line
878, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "scipy/setup.py", line 8, in configuration
    config.add_subpackage('integrate')
  File
"/usr/local/lib/python3.1/dist-packages/numpy/distutils/misc_util.py", line
972, in add_subpackage
    caller_level = 2)
  File
"/usr/local/lib/python3.1/dist-packages/numpy/distutils/misc_util.py", line
941, in get_subpackage
    caller_level = caller_level + 1)
  File
"/usr/local/lib/python3.1/dist-packages/numpy/distutils/misc_util.py", line
878, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "scipy/integrate/setup.py", line 10, in configuration
    blas_opt = get_info('blas_opt',notfound_action=2)
  File
"/usr/local/lib/python3.1/dist-packages/numpy/distutils/system_info.py",
line 310, in get_info
    return cl().get_info(notfound_action)
  File
"/usr/local/lib/python3.1/dist-packages/numpy/distutils/system_info.py",
line 461, in get_info
    raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError:
    Blas (http://www.netlib.org/blas/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [blas]) or by setting
    the BLAS environment variable.
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