[SciPy-User] Python scipy error.
Padma TAN
tanwp at gis.a-star.edu.sg
Wed May 26 00:07:35 EDT 2010
Hi
Error message I got when needed to run this. Please assist!
[rjauch at giswk002 pwm_scanner]$ python pwm_scanner.py
Traceback (most recent call last):
File "pwm_scanner.py", line 36, in <module>
from glbase import *
File "/home/rjauch/glbase/__init__.py", line 57, in <module>
from glglob import glglob
File "/home/rjauch/glbase/glglob.py", line 27, in <module>
from scipy.stats import spearmanr, pearsonr
File "/usr/local/Python-2.6.2/lib/python2.6/site-packages/scipy/stats/__init__.py", line 7, in <module>
from stats import *
File "/usr/local/Python-2.6.2/lib/python2.6/site-packages/scipy/stats/stats.py", line 199, in <module>
import scipy.linalg as linalg
File "/usr/local/Python-2.6.2/lib/python2.6/site-packages/scipy/linalg/__init__.py", line 8, in <module>
from basic import *
File "/usr/local/Python-2.6.2/lib/python2.6/site-packages/scipy/linalg/basic.py", line 389, in <module>
import decomp
File "/usr/local/Python-2.6.2/lib/python2.6/site-packages/scipy/linalg/decomp.py", line 23, in <module>
from blas import get_blas_funcs
File "/usr/local/Python-2.6.2/lib/python2.6/site-packages/scipy/linalg/blas.py", line 14, in <module>
from scipy.linalg import fblas
ImportError: /usr/local/Python-2.6.2/lib/python2.6/site-packages/scipy/linalg/fblas.so: undefined symbol: srotmg_
Can I safely ignore this? Messages shown when running python setup.py build for scipy.
customize UnixCCompiler
customize UnixCCompiler using build_clib
customize GnuFCompiler
Found executable /usr/bin/g77
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using build_clib
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
extending extension 'scipy.sparse.linalg.dsolve._zsuperlu' defined_macros with [('USE_VENDOR_BLAS', 1)]
extending extension 'scipy.sparse.linalg.dsolve._dsuperlu' defined_macros with [('USE_VENDOR_BLAS', 1)]
extending extension 'scipy.sparse.linalg.dsolve._csuperlu' defined_macros with [('USE_VENDOR_BLAS', 1)]
extending extension 'scipy.sparse.linalg.dsolve._ssuperlu' defined_macros with [('USE_VENDOR_BLAS', 1)]
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using build_ext
running scons
[root at giswk002 scipy-0.7.2]#
SYSTEM PYTHON INFO
[root at giswk002 local]# python -c 'from numpy.f2py.diagnose import run; run()'
------
os.name='posix'
------
sys.platform='linux2'
------
sys.version:
2.6.2 (r262:71600, Jul 15 2009, 19:48:50)
[GCC 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)]
------
sys.prefix:
/usr/local/Python-2.6.2
------
sys.path=':/usr/local/Python-2.6.2/lib/python2.6/site-packages:/usr/local:/usr/local/Python-2.6.2/lib/python26.zip:/usr/local/Python-2.6.2/lib/python2.6:/usr/local/Python-2.6.2/lib/python2.6/plat-linux2:/usr/local/Python-2.6.2/lib/python2.6/lib-tk:/usr/local/Python-2.6.2/lib/python2.6/lib-old:/usr/local/Python-2.6.2/lib/python2.6/lib-dynload:/root/.local/lib/python2.6/site-packages'
------
Failed to import Numeric: No module named Numeric
Failed to import numarray: No module named numarray
Found new numpy version '1.3.0' in /usr/local/Python-2.6.2/lib/python2.6/site-packages/numpy/__init__.pyc
Found f2py2e version '2' in /usr/local/Python-2.6.2/lib/python2.6/site-packages/numpy/f2py/f2py2e.pyc
Found numpy.distutils version '0.4.0' in '/usr/local/Python-2.6.2/lib/python2.6/site-packages/numpy/distutils/__init__.pyc'
------
Importing numpy.distutils.fcompiler ... ok
------
Checking availability of supported Fortran compilers:
GnuFCompiler instance properties:
archiver = ['/usr/bin/g77', '-cr']
compile_switch = '-c'
compiler_f77 = ['/usr/bin/g77', '-g', '-Wall', '-fno-second-
underscore', '-fPIC', '-O3', '-funroll-loops']
compiler_f90 = None
compiler_fix = None
libraries = ['g2c']
library_dirs = []
linker_exe = ['/usr/bin/g77', '-g', '-Wall', '-g', '-Wall']
linker_so = ['/usr/bin/g77', '-g', '-Wall', '-g', '-Wall', '-
shared']
object_switch = '-o '
ranlib = ['/usr/bin/g77']
version = LooseVersion ('3.4.3')
version_cmd = ['/usr/bin/g77', '--version']
Gnu95FCompiler instance properties:
archiver = ['/usr/bin/gfortran', '-cr']
compile_switch = '-c'
compiler_f77 = ['/usr/bin/gfortran', '-Wall', '-ffixed-form', '-fno-
second-underscore', '-fPIC', '-O3', '-funroll-loops']
compiler_f90 = ['/usr/bin/gfortran', '-Wall', '-fno-second-underscore',
'-fPIC', '-O3', '-funroll-loops']
compiler_fix = ['/usr/bin/gfortran', '-Wall', '-ffixed-form', '-fno-
second-underscore', '-Wall', '-fno-second-underscore', '-
fPIC', '-O3', '-funroll-loops']
libraries = ['gfortran']
library_dirs = []
linker_exe = ['/usr/bin/gfortran', '-Wall', '-Wall']
linker_so = ['/usr/bin/gfortran', '-Wall', '-Wall', '-shared']
object_switch = '-o '
ranlib = ['/usr/bin/gfortran']
version = LooseVersion ('4.0.0')
version_cmd = ['/usr/bin/gfortran', '--version']
Fortran compilers found:
--fcompiler=gnu GNU Fortran 77 compiler (3.4.3)
--fcompiler=gnu95 GNU Fortran 95 compiler (4.0.0)
Compilers available for this platform, but not found:
--fcompiler=absoft Absoft Corp Fortran Compiler
--fcompiler=compaq Compaq Fortran Compiler
--fcompiler=g95 G95 Fortran Compiler
--fcompiler=intel Intel Fortran Compiler for 32-bit apps
--fcompiler=intele Intel Fortran Compiler for Itanium apps
--fcompiler=intelem Intel Fortran Compiler for EM64T-based apps
--fcompiler=lahey Lahey/Fujitsu Fortran 95 Compiler
--fcompiler=nag NAGWare Fortran 95 Compiler
--fcompiler=pg Portland Group Fortran Compiler
--fcompiler=vast Pacific-Sierra Research Fortran 90 Compiler
Compilers not available on this platform:
--fcompiler=hpux HP Fortran 90 Compiler
--fcompiler=ibm IBM XL Fortran Compiler
--fcompiler=intelev Intel Visual Fortran Compiler for Itanium apps
--fcompiler=intelv Intel Visual Fortran Compiler for 32-bit apps
--fcompiler=mips MIPSpro Fortran Compiler
--fcompiler=none Fake Fortran compiler
--fcompiler=sun Sun or Forte Fortran 95 Compiler
For compiler details, run 'config_fc --verbose' setup command.
------
Importing numpy.distutils.cpuinfo ... ok
------
CPU information: CPUInfoBase__get_nbits getNCPUs has_mmx has_sse has_sse2 has_sse3 is_32bit is_Intel is_Nocona is_XEON is_Xeon is_singleCPU ------
[root at giswk002 local]#
Thanks a lot in advance!!!
Regards,
Padma
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