[SciPy-User] building scipy with

[Johann Cohen-Tanugi]

Hi Agile,
Did you modify the scipy site.cfg as well? You arementioning only the 
numpy site.cfg file below.....
best,
Johann

Agile wrote:
> Hi - I've built Python 2.5.4 with gcc 4.1.2 and with numpy 1.3.0 on 32
> bit machine running
> CentOS 5.3 using the following instructions for ATLAS officially
> sanctioned by SciPy:
>
> http://www.scipy.org/Installing_SciPy/Linux#head-40c26a5b93b9afc7e3241e1d7fd84fe9326402e7
>
> That is, I'm using the DavidCournapeau method. This is the method
> where one ends up having just
> 2 libraries installed in /usr/lib/atlas/sse2, namely
>
>    libblas.so.3.0
>    liblapack.so.3
>
> Numpy works fine, and using Nose, it was tested with 2030 tests and
> finished with the following
> message
>
>    [OK] (KNOWNFAIL=1)
>
> I'm not really sure what this means, but it suggests that 1 out of
> 2030 tests failed - I'm going
> to ignore the failure for now (since there was no clue as to which
> tested failed anyway.)  Hence
> I can safely say Numpy is working properly for at 2029 tests.
>
> The problem is I can't even begin to build Scipy because it craps out
> immediately claiming it
> can't find the ATLAS libraries (and suggests setting BLAS_SRC and
> LAPACK_SRC environment
> variables for a non-optimized build.)
>
> My question is, since it's recommend method of building ATLAS for
> Scipy, what do I have to do
> to make it work with Scipy?
>
> Here's the current Numpy's site.cfg.
>
>    [DEFAULT]
>    library_dirs = /usr/devtools/lib:/usr/lib/atlas/sse2
>    include_dirs = /usr/devtools/include:/usr/include
>    [blas_opt]
>    #libraries = f77blas, cblas, atlas
>    libraries = blas
>    [lapack_opt]
>    #libraries = lapack, f77blas, cblas, atlas
>    libraries = lapack
>    [fftw]
>    libraries = fftw3
>
> Any help would greatly appreciated.
>
> -- Agile
>
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