[SciPy-user] problem on os X with SciPy version 0.7.0.dev5151
Gideon Simpson
simpson at math.toronto.edu
Wed Nov 19 22:50:43 EST 2008
Just pulled the latest version and built it, and while running the
test suite, I got the following error:
Python 2.5.2 (r252:60911, Jul 16 2008, 10:58:19)
[GCC 4.0.1 (Apple Inc. build 5484)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import scipy
>>> scipy.test()
Running unit tests for scipy
NumPy version 1.2.1
NumPy is installed in /opt/lib/python2.5/site-packages/numpy
SciPy version 0.7.0.dev5151
SciPy is installed in /opt/lib/python2.5/site-packages/scipy
Python version 2.5.2 (r252:60911, Jul 16 2008, 10:58:19) [GCC 4.0.1
(Apple Inc. build 5484)]
nose version 0.10.4
/opt/lib/python2.5/site-packages/scipy/sparse/linalg/dsolve/
linsolve.py:20: DeprecationWarning: scipy.sparse.linalg.dsolve.umfpack
will be removed, install scikits.umfpack instead
' install scikits.umfpack instead', DeprecationWarning )
/opt/lib/python2.5/site-packages/scipy/linsolve/__init__.py:4:
DeprecationWarning: scipy.linsolve has moved to
scipy.sparse.linalg.dsolve
warn('scipy.linsolve has moved to scipy.sparse.linalg.dsolve',
DeprecationWarning)
..............[[ 2. 5. 138. 2.]
[ 3. 4. 219. 2.]
[ 0. 7. 255. 3.]
[ 1. 8. 268. 4.]
[ 6. 9. 295. 6.]] [[ 2. 5. 138. 2.]
[ 3. 4. 219. 2.]
[ 0. 7. 255. 3.]
[ 1. 8. 268. 4.]
[ 6. 9. 295. 6.]]
..0.0
.3.33333332492e-06
.3.32912455292e-06
.3.32912455292e-06
.1.09653997882e-07
.1.98734938506e-07
.4.46252451203e-06
.1.01277823406e-06
.0.0
.3.33333335334e-06
.3.33333335334e-06
.3.33333335334e-06
.......................(array([53, 55, 56]), array([2, 3, 1]))
(array([53, 55, 56]), array([2, 3, 1])) [2 2 2 2 2 2 2 2 2 2 3 3 3 3 3
3 3 3 3 3 1 1 1 1 1 1 1 1 1 1]
..7.54931229197e-08
.7.54931229197e-08
...1.09653997882e-07
..7.54931229197e-08
......[[ 3 6 138]
[ 4 5 219]
[ 1 8 255]
[ 2 9 268]
[ 7 10 295]] [[ 3. 6. 138.]
[ 4. 5. 219.]
[ 1. 8. 255.]
[ 2. 9. 268.]
[ 7. 10. 295.]]
............................................................................../opt
/lib/python2.5/site-packages/scipy/interpolate/fitpack2.py:488:
UserWarning:
The coefficients of the spline returned have been computed as the
minimal norm least-squares solution of a (numerically) rank deficient
system (deficiency=7). If deficiency is large, the results may be
inaccurate. Deficiency may strongly depend on the value of eps.
warnings.warn(message)
..../opt/lib/python2.5/site-packages/scipy/interpolate/fitpack2.py:
429: UserWarning:
The required storage space exceeds the available storage space: nxest
or nyest too small, or s too small.
The weighted least-squares spline corresponds to the current set of
knots.
warnings.warn(message)
......................................................................................................................................Warning
: 1000000 bytes requested, 20 bytes read.
./opt/lib/python2.5/site-packages/numpy/lib/utils.py:110:
DeprecationWarning: write_array is deprecated
warnings.warn(str1, DeprecationWarning)
/opt/lib/python2.5/site-packages/numpy/lib/utils.py:110:
DeprecationWarning: read_array is deprecated
warnings.warn(str1, DeprecationWarning)
....................../opt/lib/python2.5/site-packages/numpy/lib/
utils.py:110: DeprecationWarning: npfile is deprecated
warnings.warn(str1, DeprecationWarning)
............................caxpy:n=4
..caxpy:n=3
....ccopy:n=4
..ccopy:n=3
.............cscal:n=4
....cswap:n=4
..cswap:n=3
.....daxpy:n=4
..daxpy:n=3
....dcopy:n=4
..dcopy:n=3
.............dscal:n=4
....dswap:n=4
..dswap:n=3
.....saxpy:n=4
..saxpy:n=3
....scopy:n=4
..scopy:n=3
.............sscal:n=4
....sswap:n=4
..sswap:n=3
.....zaxpy:n=4
..zaxpy:n=3
....zcopy:n=4
..zcopy:n=3
.............zscal:n=4
....zswap:n=4
..zswap:n=3
..SSSSSS......SSSSSS......SSSS....NO ATLAS INFO AVAILABLE
.........................................
****************************************************************
WARNING: cblas module is empty
-----------
See scipy/INSTALL.txt for troubleshooting.
Notes:
* If atlas library is not found by numpy/distutils/system_info.py,
then scipy uses fblas instead of cblas.
****************************************************************
................S................................................../
opt/lib/python2.5/site-packages/scipy/linalg/decomp.py:1173:
DeprecationWarning: qr econ argument will be removed after scipy 0.7.
The economy transform will
then be available through the mode='economic' argument.
then be available through the mode='economic' argument.""",
DeprecationWarning)
..........................................................................................Parameter
17 to routine CSTEGR was incorrect
Mac OS BLAS parameter error in CSTEGR, parameter #0, (unavailable), is 0
-gideon
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