[SciPy-user] scipy install errors
Alastair Basden
a.g.basden at durham.ac.uk
Tue Feb 19 06:49:50 EST 2008
Hi,
Thanks for the various responses.
Have tried installing numpy/scipy with the svn versions as suggested,
using
python setup.py config_fc --fcompiler=gnu95 build
This has worked for numpy, but not for scipy:
Found executable /usr/bin/gfortran
customize Gnu95FCompiler using build_clib
building 'arpack' library
compiling Fortran sources
Fortran f77 compiler: /usr/bin/gfortran -Wall -ffixed-form
-fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx
-m3dnow -msse2 -msse
Fortran f90 compiler: /usr/bin/gfortran -Wall -fno-second-underscore -fPIC
-O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse
Fortran fix compiler: /usr/bin/gfortran -Wall -ffixed-form
-fno-second-underscore -Wall -fno-second-underscore -fPIC -O3
-funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse
compile options: '-Iscipy/splinalg/eigen/arpack/ARPACK/SRC -c'
gfortran:f77: scipy/splinalg/eigen/arpack/ARPACK/SRC/dnaupe.f
scipy/splinalg/eigen/arpack/ARPACK/SRC/dnaupe.f:0: internal compiler
error: Segmentation fault
Please submit a full bug report,
with preprocessed source if appropriate.
See <URL:http://www.suse.de/feedback> for instructions.
scipy/splinalg/eigen/arpack/ARPACK/SRC/dnaupe.f:0: internal compiler
error: Segmentation fault
Please submit a full bug report,
with preprocessed source if appropriate.
See <URL:http://www.suse.de/feedback> for instructions.
error: Command "/usr/bin/gfortran -Wall -ffixed-form
-fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx
-m3dnow -msse2 -msse -Iscipy/splinalg/eigen/arpack/ARPACK/SRC -c -c
scipy/splinalg/eigen/arpack/ARPACK/SRC/dnaupe.f -o
build/temp.linux-x86_64-2.5/scipy/splinalg/eigen/arpack/ARPACK/SRC/dnaupe.o"
failed with exit status 1
If I try the scipy installation with just setup.py build, it seems to
work, but then in python:
>>import scipy.special
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"/data/hamilton/dph1agb/lib/python2.5/site-packages/scipy/special/__init__.py",
line 8, in <module>
from basic import *
File
"/data/hamilton/dph1agb/lib/python2.5/site-packages/scipy/special/basic.py",
line 8, in <module>
from _cephes import *
ImportError:
/data/hamilton/dph1agb/lib/python2.5/site-packages/scipy/special/_cephes.so:
undefined symbol: _gfortran_filename
So (not surprisingly) it seems to need the gfortran specified...
Note - using the svn numpy and the scipy0.6, the scipy.special.kv function
is still behaving incorrectly, so it is a problem with scipy, not numpy (I
had wondered whether it was the ufunc interface or something).
Thanks...
Platform is Suse 10.0 on AMD 64 processors. lapack/atlas has been
compiled by me.
More information about the SciPy-User
mailing list