[SciPy-user] BLAS and srotgm
Robert Kern
robert.kern at gmail.com
Fri Sep 14 12:00:27 EDT 2007
Donna Calhoun wrote:
> Robert Kern <robert.kern <at> gmail.com> writes:
>
> ----------------------------------------------------------------------------
>>> .............(lots cut out here)..........................
>
>>>> line 14, in <module>
>>>> from scipy.linalg import fblas
>>>> ImportError:
>>>> /usr/local/Python-2.5-with_tk/lib/python2.5/site-packages/scipy/linalg/
>>> fblas.so:
>>>> undefined symbol: srotmg_
>>>> ----------------------------------------------------------------------------
>
>
>> Can you give us the contents of your site.cfg, the locations of all of the
>> libblas's on your system, the output from your build, and the g77 command that
>> worked? That might help us to explain the problem at least, if not fix it.
>>
>
> Yes, here is the short answer to your question. Here is the offending g77
> command :
>
> # Original command :
>
> long_dir = build/temp.linux-i686-2.5/build/src.linux-i686-2.5
>
> g77 -shared -L/usr/lib -lutil -lc -lpthread -L/usr/local/tk/lib -ltk8.4
> -L/usr/local/tcl/lib -ltcl8.4
> $long_dir/build/src.linux-i686-2.5/Lib/lib/blas/fblasmodule.o
> $long_dir/fortranobject.o
> $long_dir/Lib/lib/blas/fblaswrap.o
> $long_dir/build/src.linux-i686-2.5/Lib/lib/blas/fblas-f2pywrappers.o
> -L/usr/local/lapack-3.1.1 -L/usr/local/Python-2.5-with_tk/lib
> -L/usr/local/Python-2.5-with_tk/lib/python2.5/lib-dynload
> -Lbuild/temp.linux-i686-2.5 -lblas -lblas -lpython2.5 -lz -lg2c -o
> build/lib.linux-i686-2.5/scipy/lib/blas/fblas.so
>
> I have several 'libblas' on my system (and most of them are old)
>
> /usr/lib/libblas.a
> /usr/lib/libblas.so
> /usr/lib/libblas.so.3
> /usr/lib/libblas.so.3.0
> /usr/lib/libblas.so.3.0.3
> /usr/local/lapack-3.1.1/libblas.a
> /usr/local/lapack-3.1.1/libblas.so
>
> and the scipy build found the first one. This is first in the g77 command, and
> so g77 quit looking for any other libraries. That library didn't have
> 'srotmg' in it. (As to WHY I had libc, etc in my link path, that will have
> to wait for a longer post!)
>
> I removed the library flags to libc, and libutil and the build picked up the
> correct blas library.
I'm curious as to why you had -L/usr/lib in there. Did it come from Python's
build or do you have an LDFLAGS environment variable sitting around that's
interfering?
--
Robert Kern
"I have come to believe that the whole world is an enigma, a harmless enigma
that is made terrible by our own mad attempt to interpret it as though it had
an underlying truth."
-- Umberto Eco
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