[SciPy-user] undefined symbol srotmg_
Alainna C. Wonders
alainna at pha.jhu.edu
Thu Nov 2 10:02:55 EST 2006
Hi,
I am having a problem doing an 'import scipy.signal'. I get the below
error message:
ImportError:
/usr/site/python/lib/python2.4/site-packages/scipy/linalg/fblas.so:
undefined symbol: srotmg_
I have since installed ATLAS and BLAS, and put symlinks from the source
lib/include files into /usr/local/lib/atlas as recommended. To build
the fortran stuff, I used g77. I have also set the BLAS and ATLAS environment variables:
echo $ATLAS
/usr/local/lib/atlas
echo $BLAS
/usr/site/python/src-blas/libfblas.a
I have also rebuilt scipy twice since then and I still get the error.
The output requested in the INSTALL file for submitting to this list is
below my name.
Anyone have any recommendations for how to fix this?
Thanks,
Alainna
python -c 'from numpy.f2py.diagnose import run; run()'
------
os.name='posix'
------
sys.platform='linux2'
------
sys.version:
2.4.2 (#1, Feb 23 2006, 15:15:06)
[GCC 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)]
------
sys.prefix:
/usr/site/python
------
sys.path=':/usr/site/python/lib/python24.zip:/usr/site/python/lib/python2.4:/usr/site/python/lib/python2.4/plat-linux2:/usr/site/pyt
hon/lib/python2.4/lib-tk:/usr/site/python/lib/python2.4/lib-dynload:/usr/site/python/lib/python2.4/site-packages:/usr/site/python/li
b/python2.4/site-packages/Numeric:/usr/site/python/lib/python2.4/site-packages/PIL'
------
Found Numeric version '23.8' in
/usr/site/python/lib/python2.4/site-packages/Numeric/Numeric.pyc
Found numarray version '1.4.1' in
PINE 4.44 MESSAGE TEXT
Folder: sent-mail-oct-2006 Message 174 of 193 END NEW
/usr/site/python/lib/python2.4/site-packages/numarray/__init__.pyc
Found new numpy version '1.0' in
/usr/site/python/lib/python2.4/site-packages/numpy/__init__.pyc
Found f2py2e version '2_3396' in
/usr/site/python/lib/python2.4/site-packages/numpy/f2py/f2py2e.pyc
Found numpy.distutils version '0.4.0' in
'/usr/site/python/lib/python2.4/site-packages/numpy/distutils/__init__.pyc'
------
Importing numpy.distutils.fcompiler ... ok
------
Checking availability of supported Fortran compilers:
customize CompaqFCompiler
customize NoneFCompiler
customize AbsoftFCompiler
Could not locate executable efort
Could not locate executable efc
Could not locate executable efort
Could not locate executable efc
customize IntelFCompiler
Could not locate executable f95
customize GnuFCompiler
customize SunFCompiler
customize NAGFCompiler
customize VastFCompiler
customize GnuFCompiler
customize IbmFCompiler
customize Gnu95FCompiler
customize IntelVisualFCompiler
customize G95FCompiler
customize IntelItaniumFCompiler
Couldn't match compiler version for 'Intel(R) Fortran Compiler for 32-bit
applications, Version 8.0 Build 20031016Z Package ID:
l_fc_p_8.0.034\nCopyright (C) 1985-2003 Intel Corporation. All rights
reserved.\nFOR NON-COMMERCIAL USE ONLY\n'
customize PGroupFCompiler
customize LaheyFCompiler
customize CompaqVisualFCompiler
customize MipsFCompiler
customize HPUXFCompiler
customize IntelItaniumVisualFCompiler
customize IntelEM64TFCompiler
Couldn't match compiler version for 'Intel(R) Fortran Compiler for 32-bit
applications, Version 8.0 Build 20031016Z Package ID:
l_fc_p_8.0.034\nCopyright (C) 1985-2003 Intel Corporation. All rights
reserved.\nFOR NON-COMMERCIAL USE ONLY\n'
List of available Fortran compilers:
--fcompiler=gnu GNU Fortran Compiler (3.4.4)
--fcompiler=gnu95 GNU 95 Fortran Compiler (4.0.1)
--fcompiler=intel Intel Fortran Compiler for 32-bit apps (8.0)
List of unavailable Fortran compilers:
--fcompiler=absoft Absoft Corp Fortran Compiler
--fcompiler=compaq Compaq Fortran Compiler
--fcompiler=compaqv DIGITAL|Compaq Visual Fortran Compiler
--fcompiler=g95 G95 Fortran Compiler
--fcompiler=hpux HP Fortran 90 Compiler
--fcompiler=ibm IBM XL Fortran Compiler
--fcompiler=intele Intel Fortran Compiler for Itanium apps
--fcompiler=intelem Intel Fortran Compiler for EM64T-based apps
--fcompiler=intelev Intel Visual Fortran Compiler for Itanium apps
--fcompiler=intelv Intel Visual Fortran Compiler for 32-bit apps
--fcompiler=lahey Lahey/Fujitsu Fortran 95 Compiler
--fcompiler=mips MIPSpro Fortran Compiler
--fcompiler=nag NAGWare Fortran 95 Compiler
--fcompiler=none Fake Fortran compiler
--fcompiler=pg Portland Group Fortran Compiler
--fcompiler=sun Sun|Forte Fortran 95 Compiler
--fcompiler=vast Pacific-Sierra Research Fortran 90 Compiler
List of unimplemented Fortran compilers:
--fcompiler=f Fortran Company/NAG F Compiler
For compiler details, run 'config_fc --verbose' setup command.
------
Importing numpy.distutils.cpuinfo ... ok
------
CPU information: getNCPUs has_mmx has_sse has_sse2 is_32bit is_Intel
is_Pentium ------
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