[SciPy-user] Where do I put site.cfg? What should it contain? Can I build w/o atlas?
skip at pobox.com
skip at pobox.com
Wed Feb 15 14:32:39 EST 2006
I'm trying to build numpy an svn sandbox (just updated a couple minutes
ago). If I grub around in numpy/distutils/system_info.py it says something
about creating a site.cfg file with (for example) information about locating
atlas. It says nothing about where this file belongs. I took a stab and
placed it in my numpy source tree, right next to setup.py, with these lines:
[atlas]
library_dirs = /home/titan/skipm/src/ATLAS/lib/SunOS_Babe
include_dirs = /home/titan/skipm/src/ATLAS/include/SunOS_Babe
# for overriding the names of the atlas libraries
atlas_libs = lapack, f77blas, cblas, atlas
I then verified that those directories exist, contain apparently useful
contents, and that I didn't have a conflicting environment variable named
ATLAS:
% ls /home/titan/skipm/src/ATLAS/lib/SunOS_Babe
Make.inc libatlas.a libf77blas.a libtstatlas.a
Makefile libcblas.a liblapack.a
% ls /home/titan/skipm/src/ATLAS/include/SunOS_Babe
atlas_buildinfo.h atlas_dmv.h atlas_smvT.h atlas_zr1.h
atlas_cNCmm.h atlas_dmvN.h atlas_sr1.h atlas_zsysinfo.h
atlas_cacheedge.h atlas_dmvS.h atlas_ssysinfo.h
atlas_ztrsmXover.h
atlas_cmv.h atlas_dmvT.h atlas_strsmXover.h cXover.h
atlas_cmvN.h atlas_dr1.h atlas_trsmNB.h cmm.h
atlas_cmvS.h atlas_dsysinfo.h atlas_type.h dXover.h
atlas_cmvT.h atlas_dtrsmXover.h atlas_zNCmm.h dmm.h
atlas_cr1.h atlas_sNCmm.h atlas_zmv.h sXover.h
atlas_csysinfo.h atlas_smv.h atlas_zmvN.h smm.h
atlas_ctrsmXover.h atlas_smvN.h atlas_zmvS.h zXover.h
atlas_dNCmm.h atlas_smvS.h atlas_zmvT.h zmm.h
% env | grep ATLAS
%
Then I tried "python setup.py build":
Script started on Wed Feb 15 13:23:21 2006
babe:% python setup.py build
Running from numpy source directory.
No module named __svn_version__
F2PY Version 2_2110
blas_opt_info:
blas_mkl_info:
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/opt/lib']
language = c
include_dirs = ['/opt/include']
running build_src
building extension "atlas_version" sources
adding 'build/src/atlas_version_0x4568501b.c' to sources.
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'atlas_version' extension
compiling C sources
gcc options: '-fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC'
compile options: '-I/opt/include -Inumpy/core/include -I/opt/app/g++lib6/python-2.4/include/python2.4 -c'
/opt/lang/gcc-3.4/bin/gcc -shared build/temp.solaris-2.8-i86pc-2.4/build/src/atlas_version_0x4568501b.o -L/opt/lib -lptf77blas -lptcblas -latlas -o build/temp.solaris-2.8-i86pc-2.4/atlas_version.so
Text relocation remains referenced
against symbol offset in file
<unknown> 0x7 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xc /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x11 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x16 /opt/lib/libatlas.a(ATL_buildinfo.o)
How come distutils is ignoring my site.cfg file? Neither of these commands:
python setup.py --help
python setup.py build --help
mention site.cfg.
Failing all this, is there some way to build numpy/scipy without atlas? At
this point I just want the damn thing to build. I'll worry about
performance later (if at all).
Thx,
--
Skip Montanaro
http://www.musi-cal.com/
skip at pobox.com
More information about the SciPy-User
mailing list