[SciPy-dev] RFR 503, 849: more robust implementation of real Bessel I_v
Nils Wagner
nwagner at iam.uni-stuttgart.de
Thu Feb 26 05:35:25 EST 2009
On Thu, 26 Feb 2009 10:06:27 +0000 (UTC)
Pauli Virtanen <pav at iki.fi> wrote:
> Thu, 26 Feb 2009 08:30:18 +0100, Nils Wagner wrote:
>> Pauli Virtanen <pav at iki.fi> wrote:
>>> http://codereview.appspot.com/20078
>>> http://github.com/pv/scipy-work/tree/ticket-503-special-iv-fix
> [clip]
>> How can I apply your patch ?
>
> There's the "Download raw patch set" on the codereview
>page, on top of
> the table containing the individual patches. Apply it
>with
>
> patch -p1 < issue_20078_1.diff
>
> on top of SVN checkout.
>
> ***
>
> Alternatively, check out the git branch: first, get the
>SVN mirror
>
> git clone git://github.com/pv/scipy-svn.git scipy.git
>
> This takes some time, as the branch contains the whole
>history of
> Scipy, but you need to do this only once.
>
> Then get my branch:
>
> cd scipy.git
> git remote add pauli git://github.com/pv/scipy-work.git
> git fetch pauli
> git remote show pauli
>
> Switch the working tree to it:
>
> git checkout pauli/ticket-503-special-iv-fix
>
> Examine what was done there:
>
> git log master..
> git diff master
> git show bb21c
> git show 7f738
>
> If you want to hack on it yourself, work on a branch of
>your own:
>
> git checkout -b ticket-503-special-iv-fix
>
> If you want to get the SVN tags and branches, tell git
>you want them:
>
> cd scipy.git
> git remote rm origin
> git remote add --mirror origin
>git://github.com/pv/scipy-svn.git
> git fetch
>
> git branch -r
> git log tags/0.7.0..trunk
> git diff tags/0.7.0 trunk
>
> --
> Pauli Virtanen
>
> _______________________________________________
> Scipy-dev mailing list
> Scipy-dev at scipy.org
> http://projects.scipy.org/mailman/listinfo/scipy-dev
Hi Pauli,
Thank you very much for your detailed instructions.
They are really helpful.
I have applied the patch.
Here is the output of scipy.test()
======================================================================
FAIL: test_yn_zeros (test_basic.TestBessel)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/data/home/nwagner/local/lib/python2.5/site-packages/scipy/special/tests/test_basic.py",
line 1598, in test_yn_zeros
488.98055964441374646], rtol=1e-19)
File
"/data/home/nwagner/local/lib/python2.5/site-packages/scipy/special/tests/test_basic.py",
line 38, in assert_tol_equal
verbose=verbose, header=header)
File
"/data/home/nwagner/local/lib/python2.5/site-packages/numpy/testing/utils.py",
line 295, in assert_array_compare
raise AssertionError(msg)
AssertionError:
Not equal to tolerance rtol=1e-19, atol=0
(mismatch 100.0%)
x: array([ 450.136, 463.057, 472.807, 481.274,
488.981])
y: array([ 450.136, 463.057, 472.807, 481.274,
488.981])
======================================================================
FAIL: test_ynp_zeros (test_basic.TestBessel)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/data/home/nwagner/local/lib/python2.5/site-packages/scipy/special/tests/test_basic.py",
line 1604, in test_ynp_zeros
assert_tol_equal(yvp(443, ao), 0, atol=1e-15)
File
"/data/home/nwagner/local/lib/python2.5/site-packages/scipy/special/tests/test_basic.py",
line 38, in assert_tol_equal
verbose=verbose, header=header)
File
"/data/home/nwagner/local/lib/python2.5/site-packages/numpy/testing/utils.py",
line 295, in assert_array_compare
raise AssertionError(msg)
AssertionError:
Not equal to tolerance rtol=1e-07, atol=1e-15
(mismatch 100.0%)
x: array([ 1.239e-10, -8.119e-16, 3.608e-16,
5.898e-16, 1.226e-15])
y: array(0)
======================================================================
FAIL: test_yv_cephes_vs_amos (test_basic.TestBessel)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/data/home/nwagner/local/lib/python2.5/site-packages/scipy/special/tests/test_basic.py",
line 1664, in test_yv_cephes_vs_amos
self.check_cephes_vs_amos(yv, yn, rtol=1e-11,
atol=1e-305)
File
"/data/home/nwagner/local/lib/python2.5/site-packages/scipy/special/tests/test_basic.py",
line 1653, in check_cephes_vs_amos
assert c2.imag != 0, (v, z)
AssertionError: (301, 1.0)
----------------------------------------------------------------------
Ran 3703 tests in 58.088s
FAILED (KNOWNFAIL=2, SKIP=17, failures=3)
<nose.result.TextTestResult run=3703 errors=0 failures=3>
Cheers,
Nils
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