[SciPy-dev] Severe installation problems
Nils Wagner
nwagner at iam.uni-stuttgart.de
Thu May 31 03:19:10 EDT 2007
Hi all,
I tried to install the latest svn of scipy but it failed.(SuSE Linux 10.0)
python setup.py install
non-existing path in 'scipy/cluster': 'tests'
non-existing path in 'scipy/cluster': 'src/vq_wrap.cpp'
mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
fftw3_info:
FOUND:
libraries = ['fftw3']
library_dirs = ['/usr/lib64']
define_macros = [('SCIPY_FFTW3_H', None)]
include_dirs = ['/usr/include']
djbfft_info:
NOT AVAILABLE
non-existing path in 'scipy/fftpack': 'tests'
could not resolve pattern in 'scipy/fftpack': 'dfftpack/*.f'
non-existing path in 'scipy/fftpack': 'fftpack.pyf'
non-existing path in 'scipy/fftpack': 'src/zfft.c'
non-existing path in 'scipy/fftpack': 'src/drfft.c'
non-existing path in 'scipy/fftpack': 'src/zrfft.c'
non-existing path in 'scipy/fftpack': 'src/zfftnd.c'
non-existing path in 'scipy/fftpack': 'src/zfft_djbfft.c'
non-existing path in 'scipy/fftpack': 'src/zfft_fftpack.c'
non-existing path in 'scipy/fftpack': 'src/zfft_fftw.c'
non-existing path in 'scipy/fftpack': 'src/zfft_fftw3.c'
non-existing path in 'scipy/fftpack': 'src/zfft_mkl.c'
non-existing path in 'scipy/fftpack': 'convolve.pyf'
non-existing path in 'scipy/fftpack': 'src/convolve.c'
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib/atlas
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
NOT AVAILABLE
atlas_blas_info:
FOUND:
libraries = ['f77blas', 'cblas', 'atlas']
library_dirs = ['/usr/local/lib/atlas']
language = c
include_dirs = ['/usr/local/include/atlas']
customize GnuFCompiler
Found executable /usr/bin/g77
Found executable /usr/bin/g77
customize GnuFCompiler
Found executable /usr/bin/g77
Found executable /usr/bin/g77
customize GnuFCompiler using config
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2
-fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fPIC
compile options: '-c'
gcc: _configtest.c
gcc -pthread _configtest.o -L/usr/local/lib/atlas -lf77blas -lcblas
-latlas -o _configtest
ATLAS version 3.7.11 built by root on Fri Mar 3 10:15:49 CET 2006:
UNAME : Linux lisa 2.6.13-15.8-default #1 Tue Feb 7 11:07:24 UTC
2006 x86_64 x86_64 x86_64 GNU/Linux
INSTFLG : -1 1
MMDEF :
ARCHDEF :
F2CDEFS : -DAdd__ -DStringSunStyle
CACHEEDGE: 393216
F77 : /usr/bin/g77, version GNU Fortran (GCC) 3.3.5 20050117
(prerelease) (SUSE Linux)
F77FLAGS : -fomit-frame-pointer -O -m64 -fPIC
CC : /usr/bin/gcc, version gcc (GCC) 4.0.2 20050901
(prerelease) (SUSE Linux)
CC FLAGS : -fomit-frame-pointer -O -mfpmath=387 -m64 -fPIC
MCC : /usr/bin/gcc, version gcc (GCC) 4.0.2 20050901
(prerelease) (SUSE Linux)
MCCFLAGS : -fomit-frame-pointer -O -mfpmath=387 -m64 -fPIC
success!
removing: _configtest.c _configtest.o _configtest
FOUND:
libraries = ['f77blas', 'cblas', 'atlas']
library_dirs = ['/usr/local/lib/atlas']
language = c
define_macros = [('ATLAS_INFO', '"\\"3.7.11\\""')]
include_dirs = ['/usr/local/include/atlas']
could not resolve pattern in 'scipy/integrate': 'linpack_lite/*.f'
could not resolve pattern in 'scipy/integrate': 'mach/*.f'
could not resolve pattern in 'scipy/integrate': 'quadpack/*.f'
could not resolve pattern in 'scipy/integrate': 'odepack/*.f'
non-existing path in 'scipy/integrate': '_quadpackmodule.c'
non-existing path in 'scipy/integrate': '_odepackmodule.c'
non-existing path in 'scipy/integrate': 'vode.pyf'
non-existing path in 'scipy/integrate': 'tests'
could not resolve pattern in 'scipy/interpolate': 'fitpack/*.f'
non-existing path in 'scipy/interpolate': '_fitpackmodule.c'
non-existing path in 'scipy/interpolate': 'fitpack.pyf'
non-existing path in 'scipy/interpolate': 'tests'
non-existing path in 'scipy/io': 'numpyiomodule.c'
non-existing path in 'scipy/io': 'tests'
non-existing path in 'scipy/io': 'examples'
non-existing path in 'scipy/io': 'docs'
ATLAS version 3.7.11
non-existing path in 'scipy/lib/blas': 'fblas.pyf.src'
non-existing path in 'scipy/lib/blas': 'fblaswrap.f.src'
could not resolve pattern in 'scipy/lib/blas': 'fblas_l?.pyf.src'
non-existing path in 'scipy/lib/blas': 'cblas.pyf.src'
could not resolve pattern in 'scipy/lib/blas': 'cblas_l?.pyf.src'
non-existing path in 'scipy/lib/blas': 'tests'
lapack_opt_info:
lapack_mkl_info:
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib/atlas
libraries lapack_atlas not found in /usr/local/lib/atlas
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
numpy.distutils.system_info.atlas_threads_info
NOT AVAILABLE
atlas_info:
libraries lapack_atlas not found in /usr/local/lib/atlas
numpy.distutils.system_info.atlas_info
FOUND:
libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
library_dirs = ['/usr/local/lib/atlas']
language = f77
include_dirs = ['/usr/local/include/atlas']
customize GnuFCompiler
Found executable /usr/bin/g77
Found executable /usr/bin/g77
customize GnuFCompiler
Found executable /usr/bin/g77
Found executable /usr/bin/g77
customize GnuFCompiler using config
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2
-fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -fPIC
compile options: '-c'
gcc: _configtest.c
gcc -pthread _configtest.o -L/usr/local/lib/atlas -llapack -lf77blas
-lcblas -latlas -o _configtest
ATLAS version 3.7.11 built by root on Fri Mar 3 10:15:49 CET 2006:
UNAME : Linux lisa 2.6.13-15.8-default #1 Tue Feb 7 11:07:24 UTC
2006 x86_64 x86_64 x86_64 GNU/Linux
INSTFLG : -1 1
MMDEF :
ARCHDEF :
F2CDEFS : -DAdd__ -DStringSunStyle
CACHEEDGE: 393216
F77 : /usr/bin/g77, version GNU Fortran (GCC) 3.3.5 20050117
(prerelease) (SUSE Linux)
F77FLAGS : -fomit-frame-pointer -O -m64 -fPIC
CC : /usr/bin/gcc, version gcc (GCC) 4.0.2 20050901
(prerelease) (SUSE Linux)
CC FLAGS : -fomit-frame-pointer -O -mfpmath=387 -m64 -fPIC
MCC : /usr/bin/gcc, version gcc (GCC) 4.0.2 20050901
(prerelease) (SUSE Linux)
MCCFLAGS : -fomit-frame-pointer -O -mfpmath=387 -m64 -fPIC
success!
removing: _configtest.c _configtest.o _configtest
FOUND:
libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
library_dirs = ['/usr/local/lib/atlas']
language = f77
define_macros = [('ATLAS_INFO', '"\\"3.7.11\\""')]
include_dirs = ['/usr/local/include/atlas']
ATLAS version 3.7.11
non-existing path in 'scipy/lib/lapack': 'flapack.pyf.src'
could not resolve pattern in 'scipy/lib/lapack': 'flapack_*.pyf.src'
non-existing path in 'scipy/lib/lapack': 'clapack.pyf.src'
non-existing path in 'scipy/lib/lapack': 'calc_lwork.f'
non-existing path in 'scipy/lib/lapack': 'atlas_version.c'
non-existing path in 'scipy/lib/lapack': 'tests'
ATLAS version 3.7.11
non-existing path in 'scipy/linalg': 'src/fblaswrap.f'
non-existing path in 'scipy/linalg': 'generic_fblas.pyf'
non-existing path in 'scipy/linalg': 'generic_fblas1.pyf'
non-existing path in 'scipy/linalg': 'generic_fblas2.pyf'
non-existing path in 'scipy/linalg': 'generic_fblas3.pyf'
non-existing path in 'scipy/linalg': 'interface_gen.py'
non-existing path in 'scipy/linalg': 'generic_cblas.pyf'
non-existing path in 'scipy/linalg': 'generic_cblas1.pyf'
non-existing path in 'scipy/linalg': 'interface_gen.py'
non-existing path in 'scipy/linalg': 'generic_flapack.pyf'
non-existing path in 'scipy/linalg': 'flapack_user_routines.pyf'
non-existing path in 'scipy/linalg': 'interface_gen.py'
non-existing path in 'scipy/linalg': 'generic_clapack.pyf'
non-existing path in 'scipy/linalg': 'interface_gen.py'
non-existing path in 'scipy/linalg': 'src/det.f'
non-existing path in 'scipy/linalg': 'src/lu.f'
non-existing path in 'scipy/linalg': 'src/calc_lwork.f'
non-existing path in 'scipy/linalg': 'atlas_version.c'
non-existing path in 'scipy/linalg': 'iterative/STOPTEST2.f.src'
non-existing path in 'scipy/linalg': 'iterative/getbreak.f.src'
non-existing path in 'scipy/linalg': 'iterative/BiCGREVCOM.f.src'
non-existing path in 'scipy/linalg': 'iterative/BiCGSTABREVCOM.f.src'
non-existing path in 'scipy/linalg': 'iterative/CGREVCOM.f.src'
non-existing path in 'scipy/linalg': 'iterative/CGSREVCOM.f.src'
non-existing path in 'scipy/linalg': 'iterative/GMRESREVCOM.f.src'
non-existing path in 'scipy/linalg': 'iterative/QMRREVCOM.f.src'
non-existing path in 'scipy/linalg': 'iterative/_iterative.pyf.src'
non-existing path in 'scipy/linalg': 'tests'
non-existing path in 'scipy/linsolve': 'tests'
could not resolve pattern in 'scipy/linsolve': 'SuperLU/SRC/*.c'
non-existing path in 'scipy/linsolve': '_zsuperlumodule.c'
non-existing path in 'scipy/linsolve': '_superlu_utils.c'
non-existing path in 'scipy/linsolve': '_superluobject.c'
non-existing path in 'scipy/linsolve': '_dsuperlumodule.c'
non-existing path in 'scipy/linsolve': '_superlu_utils.c'
non-existing path in 'scipy/linsolve': '_superluobject.c'
non-existing path in 'scipy/linsolve': '_csuperlumodule.c'
non-existing path in 'scipy/linsolve': '_superlu_utils.c'
non-existing path in 'scipy/linsolve': '_superluobject.c'
non-existing path in 'scipy/linsolve': '_ssuperlumodule.c'
non-existing path in 'scipy/linsolve': '_superlu_utils.c'
non-existing path in 'scipy/linsolve': '_superluobject.c'
non-existing path in 'scipy/linsolve/umfpack': 'tests'
umfpack_info:
libraries umfpack not found in /usr/local/lib
libraries umfpack not found in /usr/lib
/usr/lib64/python2.4/site-packages/numpy/distutils/system_info.py:403:
UserWarning:
UMFPACK sparse solver (http://www.cise.ufl.edu/research/sparse/umfpack/)
not found. Directories to search for the libraries can be specified
in the
numpy/distutils/site.cfg file (section [umfpack]) or by setting
the UMFPACK environment variable.
warnings.warn(self.notfounderror.__doc__)
NOT AVAILABLE
non-existing path in 'scipy/linsolve/umfpack': 'umfpack.i'
non-existing path in 'scipy/linsolve/umfpack': 'umfpack.i'
non-existing path in 'scipy/maxentropy': 'tests'
non-existing path in 'scipy/maxentropy': 'examples'
non-existing path in 'scipy/maxentropy': 'doc'
non-existing path in 'scipy/misc': 'lena.dat'
non-existing path in 'scipy/misc': 'tests'
non-existing path in 'scipy/odr': 'odrpack/d_odr.f'
non-existing path in 'scipy/odr': 'odrpack/d_mprec.f'
non-existing path in 'scipy/odr': 'odrpack/dlunoc.f'
non-existing path in 'scipy/odr': 'odrpack/d_lpk.f'
non-existing path in 'scipy/odr': '__odrpack.c'
non-existing path in 'scipy/odr': 'tests'
could not resolve pattern in 'scipy/optimize': 'minpack/*f'
non-existing path in 'scipy/optimize': '_minpackmodule.c'
could not resolve pattern in 'scipy/optimize': 'Zeros/*.c'
non-existing path in 'scipy/optimize': 'zeros.c'
non-existing path in 'scipy/optimize': 'lbfgsb/lbfgsb.pyf'
non-existing path in 'scipy/optimize': 'lbfgsb/routines.f'
non-existing path in 'scipy/optimize': 'tnc/moduleTNC.c'
non-existing path in 'scipy/optimize': 'tnc/tnc.c'
non-existing path in 'scipy/optimize': 'cobyla/cobyla.pyf'
non-existing path in 'scipy/optimize': 'cobyla/cobyla2.f'
non-existing path in 'scipy/optimize': 'cobyla/trstlp.f'
non-existing path in 'scipy/optimize': 'minpack2/minpack2.pyf'
non-existing path in 'scipy/optimize': 'minpack2/dcsrch.f'
non-existing path in 'scipy/optimize': 'minpack2/dcstep.f'
non-existing path in 'scipy/optimize': 'tests'
non-existing path in 'scipy/signal': 'tests'
non-existing path in 'scipy/signal': 'sigtoolsmodule.c'
non-existing path in 'scipy/signal': 'firfilter.c'
non-existing path in 'scipy/signal': 'medianfilter.c'
non-existing path in 'scipy/signal': 'sigtools.h'
non-existing path in 'scipy/signal': 'splinemodule.c'
non-existing path in 'scipy/signal': 'S_bspline_util.c'
non-existing path in 'scipy/signal': 'D_bspline_util.c'
non-existing path in 'scipy/signal': 'C_bspline_util.c'
non-existing path in 'scipy/signal': 'Z_bspline_util.c'
non-existing path in 'scipy/signal': 'bspline_util.c'
non-existing path in 'scipy/sparse': 'tests'
non-existing path in 'scipy/sparse': 'sparsetools/sparsetools.py'
non-existing path in 'scipy/sparse': 'sparsetools/sparsetools_wrap.cxx'
non-existing path in 'scipy/sparse': 'sparsetools'
could not resolve pattern in 'scipy/special': 'c_misc/*.c'
could not resolve pattern in 'scipy/special': 'cephes/*.c'
could not resolve pattern in 'scipy/special': 'mach/*.f'
could not resolve pattern in 'scipy/special': 'amos/*.f'
could not resolve pattern in 'scipy/special': 'toms/*.f'
could not resolve pattern in 'scipy/special': 'cdflib/*.f'
could not resolve pattern in 'scipy/special': 'specfun/*.f'
non-existing path in 'scipy/special': '_cephesmodule.c'
non-existing path in 'scipy/special': 'amos_wrappers.c'
non-existing path in 'scipy/special': 'specfun_wrappers.c'
non-existing path in 'scipy/special': 'toms_wrappers.c'
non-existing path in 'scipy/special': 'cdf_wrappers.c'
non-existing path in 'scipy/special': 'ufunc_extras.c'
non-existing path in 'scipy/special': 'specfun.pyf'
non-existing path in 'scipy/special': 'tests'
non-existing path in 'scipy/stats': 'tests'
could not resolve pattern in 'scipy/stats': 'statlib/*.f'
non-existing path in 'scipy/stats': 'statlib.pyf'
non-existing path in 'scipy/stats': 'futil.f'
non-existing path in 'scipy/stats': 'mvn.pyf'
non-existing path in 'scipy/stats': 'mvndst.f'
non-existing path in 'scipy/ndimage': 'src/nd_image.c'
non-existing path in 'scipy/ndimage': 'src/ni_filters.c'
non-existing path in 'scipy/ndimage': 'src/ni_fourier.c'
non-existing path in 'scipy/ndimage': 'src/ni_interpolation.c'
non-existing path in 'scipy/ndimage': 'src/ni_measure.c'
non-existing path in 'scipy/ndimage': 'src/ni_morphology.c'
non-existing path in 'scipy/ndimage': 'src/ni_support.c'
non-existing path in 'scipy/ndimage': 'src'
non-existing path in 'scipy/ndimage': 'tests'
non-existing path in 'scipy/stsci/convolve': 'src/_correlatemodule.c'
non-existing path in 'scipy/stsci/convolve': 'src/_lineshapemodule.c'
non-existing path in 'scipy/stsci/image': 'src/_combinemodule.c'
non-existing path in 'scipy/weave': 'tests'
non-existing path in 'scipy/weave': 'scxx'
non-existing path in 'scipy/weave': 'blitz/blitz'
non-existing path in 'scipy/weave': 'doc'
non-existing path in 'scipy/weave': 'examples'
Warning: Subpackage 'Lib' configuration returned as 'scipy'
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands
--compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands
--fcompiler options
running build_src
building py_modules sources
creating build
creating build/src.linux-x86_64-2.4
creating build/src.linux-x86_64-2.4/scipy
building library "dfftpack" sources
building library "linpack_lite" sources
building library "mach" sources
building library "quadpack" sources
building library "odepack" sources
building library "fitpack" sources
building library "superlu_src" sources
building library "odrpack" sources
building library "minpack" sources
building library "rootfind" sources
building library "c_misc" sources
building library "cephes" sources
building library "mach" sources
building library "toms" sources
building library "amos" sources
building library "cdf" sources
building library "specfun" sources
building library "statlib" sources
building extension "scipy.cluster._vq" sources
building extension "scipy.fftpack._fftpack" sources
target build/src.linux-x86_64-2.4/_fftpackmodule.c does not exist:
Assuming _fftpackmodule.c was generated with "build_src --inplace"
command.
error: '_fftpackmodule.c' missing
Any pointer ?
Nils
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