[SciPy-dev] 0.6.x branch created

Thu Aug 30 02:55:24 EDT 2007

> Thanks for all the work getting the trunk in shape for the 0.6.x branch:
> http://svn.scipy.org/svn/scipy/branches/0.6.x
>
> There are a few small changes I still want to make and I will need to
> ask everyone to test it before making the 0.6.0 tag and release.

Compiles fine, only I need to patch umfpack.i with stuff like this:

-%include <umfpack_get_numeric.h>
+%include <suitesparse/umfpack_get_numeric.h>

But this is specific to Debian, because there the umfpack is in the
suitesparse package (I have this patch in the debian package, so you
don't have to worry about it).

The results of tests are here (am I executing them correctly?).

Ondrej

ondra at pc232:~/scipy/jarrod/dist/lib/python2.4/site-packages$ python
Python 2.4.4 (#2, Aug 16 2007, 02:03:40)
[GCC 4.1.3 20070812 (prerelease) (Debian 4.1.2-15)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import scipy
>>> scipy.test()
 Found 9 tests for scipy.cluster.vq
 Found 18 tests for scipy.fftpack.basic
 Found 4 tests for scipy.fftpack.helper
 Found 20 tests for scipy.fftpack.pseudo_diffs
 Found 1 tests for scipy.integrate
 Found 10 tests for scipy.integrate.quadpack
 Found 3 tests for scipy.integrate.quadrature
 Found 6 tests for scipy.interpolate
 Found 6 tests for scipy.interpolate.fitpack
 Found 4 tests for scipy.io.array_import
 Found 28 tests for scipy.io.mio
 Found 13 tests for scipy.io.mmio
 Found 5 tests for scipy.io.npfile
 Found 4 tests for scipy.io.recaster
 Found 16 tests for scipy.lib.blas
 Found 128 tests for scipy.lib.blas.fblas
 Found 42 tests for scipy.lib.lapack
 Found 41 tests for scipy.linalg.basic
 Found 14 tests for scipy.linalg.blas
 Found 72 tests for scipy.linalg.decomp
 Found 128 tests for scipy.linalg.fblas
 Found 6 tests for scipy.linalg.iterative
 Found 4 tests for scipy.linalg.lapack
 Found 7 tests for scipy.linalg.matfuncs
 Found 9 tests for scipy.linsolve.umfpack
 Found 2 tests for scipy.maxentropy
Warning: FAILURE importing tests for <module 'scipy.misc.pilutil' from
'scipy/misc/pilutil.pyc'>
scipy/misc/tests/test_pilutil.py:13: NameError: name
'ParametricTestCase' is not defined (in ?)
 Found 399 tests for scipy.ndimage
 Found 5 tests for scipy.odr
 Found 8 tests for scipy.optimize
 Found 1 tests for scipy.optimize.cobyla
 Found 10 tests for scipy.optimize.nonlin
 Found 4 tests for scipy.optimize.zeros
 Found 5 tests for scipy.signal.signaltools
 Found 4 tests for scipy.signal.wavelets
Warning: FAILURE importing tests for <module 'scipy.sparse' from
'scipy/sparse/__init__.pyc'>
scipy/sparse/tests/test_sparse.py:792: NameError: name
'ParametricTestCase' is not defined (in ?)
Warning: FAILURE importing tests for <module 'scipy.sparse.sparse'
from 'scipy/sparse/sparse.pyc'>
scipy/sparse/tests/test_sparse.py:792: NameError: name
'ParametricTestCase' is not defined (in ?)
 Found 342 tests for scipy.special.basic
 Found 3 tests for scipy.special.spfun_stats
 Found 107 tests for scipy.stats
 Found 73 tests for scipy.stats.distributions
 Found 23 tests for scipy.stats.models.formula
 Found 2 tests for scipy.stats.models.glm
 Found 4 tests for scipy.stats.models.regression
 Found 2 tests for scipy.stats.models.rlm
 Found 6 tests for scipy.stats.models.utils
 Found 10 tests for scipy.stats.morestats
 Found 0 tests for __main__
.../home/ondra/scipy/jarrod/dist/lib/python2.4/site-packages/scipy/cluster/vq.py:477:
UserWarning: One of the clusters is empty. Re-run kmean with a
different initialization.
 warnings.warn("One of the clusters is empty. "
exception raised as expected: One of the clusters is empty. Re-run
kmean with a different initialization.
................................................Residual: 1.05006950608e-07
..................../home/ondra/scipy/jarrod/dist/lib/python2.4/site-packages/scipy/interpolate/fitpack2.py:458:
UserWarning:
The coefficients of the spline returned have been computed as the
minimal norm least-squares solution of a (numerically) rank deficient
system (deficiency=7). If deficiency is large, the results may be
inaccurate. Deficiency may strongly depend on the value of eps.
 warnings.warn(message)
......
Don't worry about a warning regarding the number of bytes read.
Warning: 1000000 bytes requested, 20 bytes read.
.........................................................................caxpy:n=4
..caxpy:n=3
....ccopy:n=4
..ccopy:n=3
.............cscal:n=4
....cswap:n=4
..cswap:n=3
.....daxpy:n=4
..daxpy:n=3
....dcopy:n=4
..dcopy:n=3
.............dscal:n=4
....dswap:n=4
..dswap:n=3
.....saxpy:n=4
..saxpy:n=3
....scopy:n=4
..scopy:n=3
.............sscal:n=4
....sswap:n=4
..sswap:n=3
.....zaxpy:n=4
..zaxpy:n=3
....zcopy:n=4
..zcopy:n=3
.............zscal:n=4
....zswap:n=4
..zswap:n=3
..............................................................................................................................................................................caxpy:n=4
..caxpy:n=3
....ccopy:n=4
..ccopy:n=3
.............cscal:n=4
....cswap:n=4
..cswap:n=3
.....daxpy:n=4
..daxpy:n=3
....dcopy:n=4
..dcopy:n=3
.............dscal:n=4
....dswap:n=4
..dswap:n=3
.....saxpy:n=4
..saxpy:n=3
....scopy:n=4
..scopy:n=3
.............sscal:n=4
....sswap:n=4
..sswap:n=3
.....zaxpy:n=4
..zaxpy:n=3
....zcopy:n=4
..zcopy:n=3
.............zscal:n=4
....zswap:n=4
..zswap:n=3
.............Result may be inaccurate, approximate err = 4.44411917524e-09
...Result may be inaccurate, approximate err = 1.61696391382e-10
......Use minimum degree ordering on A'+A.
..Use minimum degree ordering on A'+A.
...Use minimum degree ordering on A'+A.
..........................................................................................................scipy/ndimage/interpolation.py:41:
UserWarning: Mode "reflect" may yield incorrect results on boundaries.
Please use "mirror" instead.
 warnings.warn('Mode "reflect" may yield incorrect results on '
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................0.2
0.2
0.2
......0.2
..0.2
0.2
0.2
0.2
0.2
..............................................................................................................................................................................................................................................Ties
preclude use of exact statistic.
..Ties preclude use of exact statistic.
......
----------------------------------------------------------------------
Ran 1608 tests in 6.435s

OK
<unittest.TextTestRunner object at 0xb603abac>