[SciPy-dev] Possibly bug in sparse.py
Nils Wagner
nwagner at mecha.uni-stuttgart.de
Tue Feb 14 06:59:49 EST 2006
Robert Cimrman wrote:
>Nils Wagner wrote:
>
>> C =dot(A,XX)+dot(XX,B)
>> File "/usr/local/lib/python2.4/site-packages/scipy/sparse/sparse.py",
>>line 532, in __add__
>> raise ValueError, "inconsistent shapes"
>>ValueError: inconsistent shapes
>>
>>
>>>>>A
>>>>>
>><317x317 sparse matrix of type '<type 'float64scalar'>'
>> with 7327 stored elements (space for 7327)
>> in COOrdinate format>
>>
>>
>>>>>XX
>>>>>
>>array([[0, 1, 1, ..., 1, 1, 1],
>> [1, 0, 1, ..., 1, 1, 1],
>> [1, 1, 0, ..., 1, 1, 1],
>> ...,
>> [1, 1, 1, ..., 1, 1, 1],
>> [1, 1, 1, ..., 1, 1, 1],
>> [1, 1, 1, ..., 1, 1, 1]])
>>
>>
>>>>>shape(XX)
>>>>>
>>(317, 10)
>>
>>
>>>>>shape(B)
>>>>>
>>(10, 10)
>>
>>
>>
>>>>>B
>>>>>
>><10x10 sparse matrix of type '<type 'float64scalar'>'
>> with 28 stored elements (space for 28)
>> in Compressed Sparse Column format>
>>
>>How can I fix this problem ?
>>
>
>First, use A * XX + XX * B instead of dot, since dot is a numpy.core
>function and as such cannot handle sparse matrices.
>
>Then there was a bug in the coo_matrix() constructor (not fixed yet in
>svn, cannot log in...) causing that the shape was one less than the
>actual shape... Thanks for debugging!
>
>---
>Side note, not directly related to your problem:
>
>Another bug in the coo_matrix() constructor is that it does not work for
>all value types (e.g. int32), because some dtypes are probably missing
>in the type translation table of sparse.py - can someone (Travis? :)
>help with this? I have followed the recent changes to the dtype object
>only superficially...
>
>r.
>
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>
Hi Robert,
Thank you for your comments.
Meanwhile I ask you to reply to some questions raised up w.r.t. to
sparse matrix objects.
See FAQ_sparse.py for details.
I look forward to hearing from you.
Cheers
Nils
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