[SciPy-dev] Merged numarray branch

Sun Jan 16 21:57:54 EST 2005

Pearu Peterson wrote:

> It looks like the installation of scipy was not completely succesful.
> Please, check scipy installation messages for any errors. 

After my previous post, I noticed that I had neglected to produce a 
complete LAPACK.  My oversight.  Now scipy.test(level=1) dies with a 
segmentation fault a little way in after all the messages about various 
missing tests.

> Also, what is
> the output of
>   python system_info.py
> when executed in scipy_distutils directory?

_pkg_config_info:
  NOT AVAILABLE

agg2_info:
( src_dirs = .:/usr/local/src )
  NOT AVAILABLE

atlas_blas_info:
( library_dirs = /usr/local/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /usr/local/lib/atlas/atlas_icc.so )
( paths: /usr/local/lib/atlas )
( paths: /usr/lib/sse2 )
( paths: /usr/local/lib/atlas/libf77blas.a )
( paths: /usr/local/lib/atlas/libcblas.a )
( paths: /usr/local/lib/atlas/libatlas.a )
( include_dirs = /usr/local/lib/atlas:/usr/local/include:/usr/include )
( paths: /usr/local/lib/atlas/atlas_icc.so )
( paths: /usr/local/include/atlas )
( paths: 
/usr/local/lib/atlas/cblas.h,/usr/local/lib/atlas/cblas.h,/usr/local/lib/atlas/cblas.h,/usr/local/include/atlas/cblas.h 
)
( library_dirs = /usr/local/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /usr/local/lib/atlas/atlas_icc.so )
( paths: /usr/local/lib/atlas )
( paths: /usr/lib/sse2 )
  FOUND:
    libraries = ['f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/local/lib/atlas']
    language = c
    include_dirs = ['/usr/local/lib/atlas']

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
( library_dirs = /usr/local/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /usr/local/lib/atlas/atlas_icc.so )
( paths: /usr/local/lib/atlas )
( paths: /usr/lib/sse2 )
( paths: /usr/local/lib/atlas/libatlas.a )
( paths: /usr/local/lib/atlas/libatlas.a )
  NOT AVAILABLE

atlas_info:
( library_dirs = /usr/local/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /usr/local/lib/atlas/atlas_icc.so )
( paths: /usr/local/lib/atlas )
( paths: /usr/lib/sse2 )
( paths: /usr/local/lib/atlas/libf77blas.a )
( paths: /usr/local/lib/atlas/libcblas.a )
( paths: /usr/local/lib/atlas/libatlas.a )
( paths: /usr/local/lib/atlas/atlas_icc.so )
( paths: /usr/local/lib/atlas/liblapack.a )
system_info.atlas_info
( include_dirs = /usr/local/lib/atlas:/usr/local/include:/usr/include )
( paths: /usr/local/lib/atlas/atlas_icc.so )
( paths: /usr/local/include/atlas )
( paths: 
/usr/local/lib/atlas/cblas.h,/usr/local/lib/atlas/cblas.h,/usr/local/lib/atlas/cblas.h,/usr/local/include/atlas/cblas.h 
)
( library_dirs = /usr/local/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /usr/local/lib/atlas/atlas_icc.so )
( paths: /usr/local/lib/atlas )
( paths: /usr/lib/sse2 )
  FOUND:
    libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/local/lib/atlas']
    language = f77
    include_dirs = ['/usr/local/lib/atlas']

atlas_threads_info:
Setting PTATLAS=ATLAS
( library_dirs = /usr/local/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /usr/local/lib/atlas/atlas_icc.so )
( paths: /usr/local/lib/atlas )
( paths: /usr/lib/sse2 )
( paths: /usr/local/lib/atlas/libatlas.a )
( paths: /usr/local/lib/atlas/libatlas.a )
system_info.atlas_threads_info
  NOT AVAILABLE

blas_info:
( library_dirs = /usr/local/lib:/usr/lib )
  NOT AVAILABLE

blas_opt_info:
running build_src
building extension "atlas_version" sources
  adding 'build/src/atlas_version_0x22d50c26.c' to sources.
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/local/lib/atlas']
    language = c
    define_macros = [('ATLAS_INFO', '"\\"3.7.8\\""')]
    include_dirs = ['/usr/local/lib/atlas']

blas_src_info:
( src_dirs = .:/usr/local/src )
  NOT AVAILABLE

boost_python_info:
( src_dirs = .:/usr/local/src )
  NOT AVAILABLE

dfftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
  NOT AVAILABLE

dfftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
  NOT AVAILABLE

djbfft_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
  NOT AVAILABLE

fftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
( paths: /usr/lib/librfftw.so )
( paths: /usr/lib/libfftw.so )
( paths: /usr/include/fftw.h,/usr/include/rfftw.h )
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['rfftw', 'fftw']
    library_dirs = ['/usr/lib']
    define_macros = [('SCIPY_FFTW_H', None)]
    include_dirs = ['/usr/include']

fftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
( paths: /usr/lib/librfftw_threads.so )
( paths: /usr/lib/libfftw_threads.so )
( paths: /usr/include/fftw_threads.h,/usr/include/rfftw_threads.h )
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['rfftw_threads', 'fftw_threads']
    library_dirs = ['/usr/lib']
    define_macros = [('SCIPY_FFTW_THREADS_H', None)]
    include_dirs = ['/usr/include']

freetype2_info:
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['freetype', 'z']
    define_macros = [('FREETYPE2_INFO', '"\\"9.7.3\\""'), 
('FREETYPE2_VERSION_9_7_3', None)]
    include_dirs = ['/usr/include/freetype2']

gdk_2_info:
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['gdk-x11-2.0', 'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 
'pangox-1.0', 'pango-1.0', 'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GDK_2_INFO', '"\\"2.4.14\\""'), 
('GDK_VERSION_2_4_14', None), ('XTHREADS', None), ('_REENTRANT', None), 
('XUSE_MTSAFE_API', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', 
'/usr/X11R6/include', '/usr/include/pango-1.0', 
'/usr/include/freetype2', '/usr/include/freetype2/config', 
'/usr/include/glib-2.0', '/usr/lib/glib-2.0/include']

gdk_info:
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['gdk', 'Xi', 'Xext', 'X11', 'm', 'glib']
    library_dirs = ['/usr/X11R6/lib']
    define_macros = [('GDK_INFO', '"\\"1.2.10\\""'), 
('GDK_VERSION_1_2_10', None)]
    include_dirs = ['/usr/include/gtk-1.2', '/usr/X11R6/include', 
'/usr/include/glib-1.2', '/usr/lib/glib/include']

gdk_pixbuf_2_info:
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['gdk_pixbuf-2.0', 'm', 'gobject-2.0', 'gmodule-2.0', 
'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GDK_PIXBUF_2_INFO', '"\\"2.4.14\\""'), 
('GDK_PIXBUF_VERSION_2_4_14', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/include/glib-2.0', 
'/usr/lib/glib-2.0/include']

gdk_pixbuf_xlib_2_info:
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['gdk_pixbuf_xlib-2.0', 'gdk_pixbuf-2.0', 'm', 
'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GDK_PIXBUF_XLIB_2_INFO', '"\\"2.4.14\\""'), 
('GDK_PIXBUF_XLIB_VERSION_2_4_14', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/include/glib-2.0', 
'/usr/lib/glib-2.0/include']

gdk_x11_2_info:
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['gdk-x11-2.0', 'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 
'pangox-1.0', 'pango-1.0', 'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GDK_X11_2_INFO', '"\\"2.4.14\\""'), 
('GDK_X11_VER/home/swalton/src/scipy/scipy_core/scipy_distutils/system_info.py:865: 
FutureWarning: hex()/oct() of negative int will return a signed string 
in Python 2.4 and up
  magic = hex(hash(`config`))
SION_2_4_14', None), ('XTHREADS', None), ('_REENTRANT', None), 
('XUSE_MTSAFE_API', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', 
'/usr/X11R6/include', '/usr/include/pango-1.0', 
'/usr/include/freetype2', '/usr/include/freetype2/config', 
'/usr/include/glib-2.0', '/usr/lib/glib-2.0/include']

gtkp_2_info:
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['gtk-x11-2.0', 'gdk-x11-2.0', 'atk-1.0', 
'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 'pangox-1.0', 'pango-1.0', 
'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GTKP_2_INFO', '"\\"2.4.14\\""'), 
('GTK_VERSION_2_4_14', None), ('XTHREADS', None), ('_REENTRANT', None), 
('XUSE_MTSAFE_API', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', 
'/usr/X11R6/include', '/usr/include/atk-1.0', '/usr/include/pango-1.0', 
'/usr/include/freetype2', '/usr/include/freetype2/config', 
'/usr/include/glib-2.0', '/usr/lib/glib-2.0/include']

gtkp_x11_2_info:
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['gtk-x11-2.0', 'gdk-x11-2.0', 'atk-1.0', 
'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 'pangox-1.0', 'pango-1.0', 
'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GTKP_X11_2_INFO', '"\\"2.4.14\\""'), 
('GTK_X11_VERSION_2_4_14', None), ('XTHREADS', None), ('_REENTRANT', 
None), ('XUSE_MTSAFE_API', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', 
'/usr/X11R6/include', '/usr/include/atk-1.0', '/usr/include/pango-1.0', 
'/usr/include/freetype2', '/usr/include/freetype2/config', 
'/usr/include/glib-2.0', '/usr/lib/glib-2.0/include']

lapack_atlas_info:
( library_dirs = /usr/local/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /usr/local/lib/atlas/atlas_icc.so )
( paths: /usr/local/lib/atlas )
( paths: /usr/lib/sse2 )
( paths: /usr/local/lib/atlas/libf77blas.a )
( paths: /usr/local/lib/atlas/libcblas.a )
( paths: /usr/local/lib/atlas/libatlas.a )
( paths: /usr/local/lib/atlas/libf77blas.a )
( paths: /usr/local/lib/atlas/libcblas.a )
( paths: /usr/local/lib/atlas/libatlas.a )
system_info.lapack_atlas_info
  NOT AVAILABLE

lapack_atlas_threads_info:
Setting PTATLAS=ATLAS
( library_dirs = /usr/local/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /usr/local/lib/atlas/atlas_icc.so )
( paths: /usr/local/lib/atlas )
( paths: /usr/lib/sse2 )
( paths: /usr/local/lib/atlas/libatlas.a )
( paths: /usr/local/lib/atlas/libatlas.a )
system_info.lapack_atlas_threads_info
  NOT AVAILABLE

lapack_info:
( library_dirs = /usr/local/lib:/usr/lib )
  NOT AVAILABLE

lapack_opt_info:
running build_src
building extension "atlas_version" sources
  adding 'build/src/atlas_version_0xcb01c8e1.c' to sources.
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize GnuFCompiler
customize GnuFCompiler
customize GnuFCompiler using build_ext
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/local/lib/atlas']
    language = f77
    define_macros = [('ATLAS_INFO', '"\\"3.7.8\\""')]
    include_dirs = ['/usr/local/lib/atlas']

lapack_src_info:
( src_dirs = .:/usr/local/src )
  NOT AVAILABLE

numarray_info:
( include_dirs = /usr/include/python2.3 )
( paths: /usr/include/python2.3/numarray/arrayobject.h )
( library_dirs =  )
  FOUND:
    define_macros = [('NUMARRAY_VERSION', '"\\"1.1.1\\""')]
    include_dirs = ['/usr/include/python2.3']

numpy_info:
( include_dirs = /usr/include/python2.3 )
( paths: /usr/include/python2.3/Numeric/arrayobject.h )
( library_dirs =  )
  FOUND:
    define_macros = [('NUMERIC_VERSION', '"\\"23.7\\""')]
    include_dirs = ['/usr/include/python2.3']

sfftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
( paths: /usr/lib/libsrfftw.so )
( paths: /usr/lib/libsfftw.so )
( paths: /usr/include/sfftw.h,/usr/include/srfftw.h )
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['srfftw', 'sfftw']
    library_dirs = ['/usr/lib']
    define_macros = [('SCIPY_SFFTW_H', None)]
    include_dirs = ['/usr/include']

sfftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
( paths: /usr/lib/libsrfftw_threads.so )
( paths: /usr/lib/libsfftw_threads.so )
( paths: /usr/include/sfftw_threads.h,/usr/include/srfftw_threads.h )
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['srfftw_threads', 'sfftw_threads']
    library_dirs = ['/usr/lib']
    define_macros = [('SCIPY_SFFTW_THREADS_H', None)]
    include_dirs = ['/usr/include']

wx_info:
Could not locate executable wx-config
File not found: wx-config. Cannot determine wx info.
  NOT AVAILABLE

x11_info:
( library_dirs = /usr/X11R6/lib:/usr/lib )
( include_dirs = /usr/X11R6/include:/usr/include )
( paths: /usr/X11R6/lib/libX11.so )
( paths: /usr/X11R6/include/X11/X.h )
( library_dirs = /usr/X11R6/lib:/usr/lib )
  FOUND:
    libraries = ['X11']
    library_dirs = ['/usr/X11R6/lib']
    include_dirs = ['/usr/X11R6/include']

xft_info:
( library_dirs = /usr/local/lib:/usr/lib )
  FOUND:
    libraries = ['Xft', 'X11', 'freetype', 'Xrender', 'fontconfig']
    library_dirs = ['/usr/X11R6/lib']
    define_macros = [('XFT_INFO', '"\\"2.1.2.2\\""'), 
('XFT_VERSION_2_1_2_2', None)]
    include_dirs = ['/usr/X11R6/include', '/usr/include/freetype2', 
'/usr/include/freetype2/config']