failed to build version 0.12

[Jean-Patrick Pommier]

Thank you!

Successfully built scikit-image dask toolz
Installing collected packages: toolz, dask, scikit-image
  Found existing installation: scikit-image 0.11.3
    Not uninstalling scikit-image at /usr/lib/python2.7/site-packages, 
outside environment /home/jeanpat/Developpements/DIP4FISH
Successfully installed dask-0.8.0 scikit-image-0.12.1 toolz-0.7.4
(DIP4FISH)[jeanpat at dip4fish ~]$ python2
Python 2.7.11 (default, Dec  6 2015, 15:43:46) 
[GCC 5.2.0] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import skimage
>>> print skimage.__version__
0.12.1
>>> 




Le lundi 7 mars 2016 09:06:38 UTC+1, Jean-Patrick Pommier a écrit :
>
> Hello,
>
> Thank you for this new version of scikit-image.
>
> I met the following message when i try to upgrade scikit-image (linux):
>
> $ pip install --upgrade scikit-image
> Collecting scikit-image
>   Using cached scikit-image-0.12.0.tar.gz
>     Complete output from command python setup.py egg_info:
>     Partial import of skimage during the build process.
>     Traceback (most recent call last):
>       File "<string>", line 1, in <module>
>       File "/tmp/pip-build-rR00uc/scikit-image/setup.py", line 146, in 
> <module>
>         **extra
>       File "/usr/lib/python2.7/site-packages/numpy/distutils/core.py", 
> line 135, in setup
>         config = configuration()
>       File "/tmp/pip-build-rR00uc/scikit-image/setup.py", line 69, in 
> configuration
>         config.add_subpackage('skimage')
>       File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py"
> , line 1002, in add_subpackage
>         caller_level = 2)
>       File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py"
> , line 971, in get_subpackage
>         caller_level = caller_level + 1)
>       File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py"
> , line 908, in _get_configuration_from_setup_py
>         config = setup_module.configuration(*args)
>       File "skimage/setup.py", line 21, in configuration
>         config.add_subpackage('morphology')
>       File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py"
> , line 1002, in add_subpackage
>         caller_level = 2)
>       File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py"
> , line 971, in get_subpackage
>         caller_level = caller_level + 1)
>       File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py"
> , line 908, in _get_configuration_from_setup_py
>         config = setup_module.configuration(*args)
>       File "skimage/morphology/setup.py", line 19, in configuration
>         cython(['_skeletonize_3d_cy.pyx.in'], working_path=base_path)
>       File "skimage/_build.py", line 39, in cython
>         if not _changed(pyxfile):
>       File "skimage/_build.py", line 70, in _changed
>         with open(filename, 'rb') as f:
>     IOError: [Errno 2] No such file or directory: 
> '/tmp/pip-build-rR00uc/scikit-image/skimage/morphology/_
> skeletonize_3d_cy.pyx.in'
>
> I got the same message working with sudo or from a virtual env.
>
> Best regards
> jean-patrick
>
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