From stefanv at berkeley.edu  Tue Dec  1 04:28:45 2015
From: stefanv at berkeley.edu (Stefan van der Walt)
Date: Tue, 01 Dec 2015 01:28:45 -0800
Subject: Radius-scale matching in Determinant of Hessian (DoH) blob detector
In-Reply-To: <55b68e9d-d528-4149-a105-94f11a4d0fca@googlegroups.com>
References: <2ad35b8b-aeb2-4e18-9d7a-bbde72b4875e@googlegroups.com> <55b68e9d-d528-4149-a105-94f11a4d0fca@googlegroups.com>
Message-ID: <878u5ea56a.fsf@berkeley.edu>

Hi Iakovos

On 2015-11-28 22:31:37, Vighnesh Birodkar <vighneshbirodkar at gmail.com> wrote:
> Could you provide an image and short code example ? If that it not the case 
> then the unit tests would fail
> https://github.com/scikit-image/scikit-image/blob/master/skimage/feature/tests/test_blob.py

Any feedback on this?

St?fan


From kevin.keraudren at googlemail.com  Tue Dec  1 07:37:18 2015
From: kevin.keraudren at googlemail.com (Kevin Keraudren)
Date: Tue, 1 Dec 2015 12:37:18 +0000
Subject: Pull request for LineModel3D to be used with RANSAC
Message-ID: <CADe6jSrO6nfMjd1USx7ueMSmO=RGC4gRL8pdefkOS2c=rS4CAA@mail.gmail.com>

Hi,

I just  sent a pull request for a proposed LineModel3D to be used with
RANSAC:

https://github.com/scikit-image/scikit-image/pull/1795

I included an example and unit tests and I would be happy to receive
comments and feedback.

Kind Regards,

Kevin
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From stefanv at berkeley.edu  Tue Dec  1 16:26:33 2015
From: stefanv at berkeley.edu (=?UTF-8?Q?St=C3=A9fan_van_der_Walt?=)
Date: Tue, 1 Dec 2015 13:26:33 -0800
Subject: Strange Travis error on #1794
Message-ID: <CABDkGQ=mYOXhpPovAcXmDkcEaRXT9u0iQN-xcJWPKCSrDrdnsA@mail.gmail.com>

It looks like the docs build is breaking unrelated to #1794:

https://travis-ci.org/scikit-image/scikit-image/jobs/94241837

Any ideas?


From silvertrumpet999 at gmail.com  Tue Dec  1 18:00:21 2015
From: silvertrumpet999 at gmail.com (Josh Warner)
Date: Tue, 1 Dec 2015 15:00:21 -0800 (PST)
Subject: Strange Travis error on #1794
In-Reply-To: <565E1C40.2000608@gmail.com>
References: <CABDkGQ=mYOXhpPovAcXmDkcEaRXT9u0iQN-xcJWPKCSrDrdnsA@mail.gmail.com>
 <565E1C40.2000608@gmail.com>
Message-ID: <7ad34791-0059-4ca2-a86a-f1138488748f@googlegroups.com>

Per @blink1037's Sphinx guide 
at https://github.com/scikit-image/scikit-image/blob/master/doc/README.md 
my best guess is it has to do with the references in 
https://github.com/scikit-image/scikit-image/blob/master/skimage/draw/_draw.pyx 
though none actually appear to be malformatted on a cursory glance.

On Tuesday, December 1, 2015 at 4:18:16 PM UTC-6, Jonathan Helmus wrote:
>
> On 12/01/2015 03:26 PM, St?fan van der Walt wrote: 
> > It looks like the docs build is breaking unrelated to #1794: 
> > 
> > https://travis-ci.org/scikit-image/scikit-image/jobs/94241837 
> > 
> > Any ideas? 
> > 
> Sphinx 1.3.2 was released a few days back, could something in this 
> release have broken the doc build? 
>
>     - Jonathan Helmus 
>
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From jjhelmus at gmail.com  Tue Dec  1 17:16:32 2015
From: jjhelmus at gmail.com (Jonathan Helmus)
Date: Tue, 1 Dec 2015 16:16:32 -0600
Subject: Strange Travis error on #1794
In-Reply-To: <CABDkGQ=mYOXhpPovAcXmDkcEaRXT9u0iQN-xcJWPKCSrDrdnsA@mail.gmail.com>
References: <CABDkGQ=mYOXhpPovAcXmDkcEaRXT9u0iQN-xcJWPKCSrDrdnsA@mail.gmail.com>
Message-ID: <565E1C40.2000608@gmail.com>

On 12/01/2015 03:26 PM, St?fan van der Walt wrote:
> It looks like the docs build is breaking unrelated to #1794:
>
> https://travis-ci.org/scikit-image/scikit-image/jobs/94241837
>
> Any ideas?
>
Sphinx 1.3.2 was released a few days back, could something in this
release have broken the doc build?

    - Jonathan Helmus


From ejsaiet at alaska.edu  Wed Dec  2 00:00:16 2015
From: ejsaiet at alaska.edu (Arctic_python)
Date: Tue, 1 Dec 2015 21:00:16 -0800 (PST)
Subject: label_boundaries problem with ndim = label_img.ndim
Message-ID: <86311586-62f2-40a0-86d6-c0903f8eed25@googlegroups.com>

Hello,
I am trying to label the boundaries of an image that was segmented and 
labelled. I am doing something wrong because the code below returns

auroura_bound=segmentation.find_boundaries(props,connectivity=1,mode='thick',background=0)
  File 
"/usr/local/lib/python3.4/dist-packages/skimage/segmentation/boundaries.py", 
line 148, in find_boundaries
    ndim = label_img.ndim
AttributeError: 'list' object has no attribute 'ndim'


   1. label_image=measure.label(g_median_bin, background=0) # g_median_bin 
   is a binary image 
   2. label_image=label_image+1 # adjusted from -1 to 0
   3. props = measure.regionprops(label_image,intensity_image=g_median_bin) 
   # creating a regionprops object
   4. label_bound=segmentation.find_boundaries(props,connectivity=1,mode=
   'thick',background=0) # finding boundaries
   5. boundaries=segmentation.mark_boundaries(g_median,label_bound) 




label_bound=segmentation.find_boundaries(props,connectivity=1,mode='thick',background=0)
  File "/usr/local/lib/python3.4/dist-packages/skimage/segmentation/boundaries.py", line 148, in find_boundaries
    ndim = label_img.ndim
AttributeError: 'list' object has no attribute 'ndim'

I think line 4. is redundant and not required for mark_boundary?! 





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From stefanv at berkeley.edu  Wed Dec  2 00:09:29 2015
From: stefanv at berkeley.edu (Stefan van der Walt)
Date: Tue, 01 Dec 2015 21:09:29 -0800
Subject: label_boundaries problem with ndim = label_img.ndim
In-Reply-To: <86311586-62f2-40a0-86d6-c0903f8eed25@googlegroups.com>
References: <86311586-62f2-40a0-86d6-c0903f8eed25@googlegroups.com>
Message-ID: <87zixt8mie.fsf@berkeley.edu>

On 2015-12-01 21:00:16, Arctic_python <ejsaiet at alaska.edu> wrote:
>     ndim = label_img.ndim
> AttributeError: 'list' object has no attribute 'ndim'
>
>    1. label_image=measure.label(g_median_bin, background=0) # g_median_bin 
>    is a binary image

That does not seem to be true, given the error message.

St?fan


From ejsaiet at alaska.edu  Wed Dec  2 01:33:06 2015
From: ejsaiet at alaska.edu (Eyal Saiet)
Date: Tue, 1 Dec 2015 21:33:06 -0900
Subject: label_boundaries problem with ndim = label_img.ndim
In-Reply-To: <87zixt8mie.fsf@berkeley.edu>
References: <86311586-62f2-40a0-86d6-c0903f8eed25@googlegroups.com> <87zixt8mie.fsf@berkeley.edu>
Message-ID: <CA+ysReAKgzF=JXEjz7hti8sz0EBS_Hr=PaFWTxN6FV-GtROB0w@mail.gmail.com>

Stefan,
I do not understand what is not true about the label_image object.
bellow is the code, in addition I added a plot of the label_image object.



   1. label_image=measure.label(g_median_bin, background=0)
   2. label_image +=1
   3. plt.figure()
   4. plt.imshow(label_image,cmap=plt.cm.gray,interpolation='nearest',origin
   ='lower')
   5. plt.title('label_image')
   6. plt.show()
   7. props = measure.regionprops(label_image,intensity_image=g_median_bin)
   8. label_bound=segmentation.find_boundaries(props,connectivity=1,mode=
   'thick',background=0)
   9. boundaries=segmentation.mark_boundaries(g_median,label_bound)




[image: Inline image 1]

On Tue, Dec 1, 2015 at 8:09 PM, Stefan van der Walt <stefanv at berkeley.edu>
wrote:

> On 2015-12-01 21:00:16, Arctic_python <ejsaiet at alaska.edu> wrote:
> >     ndim = label_img.ndim
> > AttributeError: 'list' object has no attribute 'ndim'
> >
> >    1. label_image=measure.label(g_median_bin, background=0) #
> g_median_bin
> >    is a binary image
>
> That does not seem to be true, given the error message.
>
> St?fan
>
> --
> You received this message because you are subscribed to a topic in the
> Google Groups "scikit-image" group.
> To unsubscribe from this topic, visit
> https://groups.google.com/d/topic/scikit-image/PwmizxFahYE/unsubscribe.
> To unsubscribe from this group and all its topics, send an email to
> scikit-image+unsubscribe at googlegroups.com.
> To post to this group, send an email to scikit-image at googlegroups.com.
> To view this discussion on the web, visit
> https://groups.google.com/d/msgid/scikit-image/87zixt8mie.fsf%40berkeley.edu
> .
> For more options, visit https://groups.google.com/d/optout.
>



-- 
Eyal Saiet

Project manager
Remote sensing and in-situ measurements

Geophysical Institute
University of Alaska Fairbanks
Fairbanks, AK 99775
(907) 750 6555 (cell)

ejsaiet at alaska.edu
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From juliusbierk at gmail.com  Tue Dec  1 16:56:18 2015
From: juliusbierk at gmail.com (Julius Bier Kirkegaard)
Date: Tue, 1 Dec 2015 21:56:18 +0000
Subject: Strange Travis error on #1794
In-Reply-To: <CABDkGQ=mYOXhpPovAcXmDkcEaRXT9u0iQN-xcJWPKCSrDrdnsA@mail.gmail.com>
References: <CABDkGQ=mYOXhpPovAcXmDkcEaRXT9u0iQN-xcJWPKCSrDrdnsA@mail.gmail.com>
Message-ID: <CAMju8d7675nh2o3ytTjio6xizEAttUGXtMjjrQfgCAwk2pCixw@mail.gmail.com>

hmmm, same here:
https://travis-ci.org/scikit-image/scikit-image/jobs/94152543


On 1 December 2015 at 21:26, St?fan van der Walt <stefanv at berkeley.edu>
wrote:

> It looks like the docs build is breaking unrelated to #1794:
>
> https://travis-ci.org/scikit-image/scikit-image/jobs/94241837
>
> Any ideas?
>
> --
> You received this message because you are subscribed to the Google Groups
> "scikit-image" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to scikit-image+unsubscribe at googlegroups.com.
> To post to this group, send an email to scikit-image at googlegroups.com.
> To view this discussion on the web, visit
> https://groups.google.com/d/msgid/scikit-image/CABDkGQ%3DmYOXhpPovAcXmDkcEaRXT9u0iQN-xcJWPKCSrDrdnsA%40mail.gmail.com
> .
> For more options, visit https://groups.google.com/d/optout.
>
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From ejsaiet at alaska.edu  Wed Dec  2 02:46:51 2015
From: ejsaiet at alaska.edu (Eyal Saiet)
Date: Tue, 1 Dec 2015 22:46:51 -0900
Subject: label_boundaries problem with ndim = label_img.ndim
In-Reply-To: <CA+JHcKT5TijcW_Xa=EJt+di-o_3Hn5PmuHJzXc0YyM44vFr+DA@mail.gmail.com>
References: <86311586-62f2-40a0-86d6-c0903f8eed25@googlegroups.com>
 <87zixt8mie.fsf@berkeley.edu> <CA+ysReAKgzF=JXEjz7hti8sz0EBS_Hr=PaFWTxN6FV-GtROB0w@mail.gmail.com>
 <CA+JHcKT5TijcW_Xa=EJt+di-o_3Hn5PmuHJzXc0YyM44vFr+DA@mail.gmail.com>
Message-ID: <CA+ysReD7NpvQdJgNfk_0h9b43wSEJ1TobPG0jf_MsKj6CGxDcg@mail.gmail.com>

thanks Juan, I have tried that too:

   1. label_image=measure.label(g_median_bin, background=0)
   2. label_image +=1
   3. plt.figure()
   4. plt.imshow(label_image,cmap=plt.cm.gray,interpolation='nearest',origin
   ='lower')
   5. plt.title('label_image')
   6. plt.show()
   7. props=measure.regionprops(label_image,intensity_image=g_median_bin)
   8. label_bound=segmentation.find_boundaries(label_image,connectivity=1,
   mode='thick',background=0)
   9. boundaries=segmentation.mark_boundaries(g_median,label_bound)

Traceback (most recent call last):
  File attributes_thrash.py", line 127, in <module>

boundaries=segmentation.mark_boundaries(g_median,label_bound)#,color=(1,0,0),
outline_color=None, mode='outer', background_label=0)
  File
"/usr/local/lib/python3.4/dist-packages/skimage/segmentation/boundaries.py",
line 213, in mark_boundaries
    background=background_label)
  File
"/usr/local/lib/python3.4/dist-packages/skimage/segmentation/boundaries.py",
line 156, in find_boundaries
    max_label = np.iinfo(label_img.dtype).max
  File "/usr/local/lib/python3.4/dist-packages/numpy/core/getlimits.py",
line 254, in __init__
    raise ValueError("Invalid integer data type.")
ValueError: Invalid integer data type.

Process finished with exit code 1


On Tue, Dec 1, 2015 at 10:38 PM, Juan Nunez-Iglesias <jni.soma at gmail.com>
wrote:

> Hi Eyal,
>
> You are passing a list of regionprops (props, in your code) to
> "find_boundaries", whereas it expects an array: a single image of labeled
> objects (label_img, in your code).
>
> Juan.
>
> On Wed, Dec 2, 2015 at 5:33 PM, Eyal Saiet <ejsaiet at alaska.edu> wrote:
>
>> Stefan,
>> I do not understand what is not true about the label_image object.
>> bellow is the code, in addition I added a plot of the label_image object.
>>
>>
>>
>>    1. label_image=measure.label(g_median_bin, background=0)
>>    2. label_image +=1
>>    3. plt.figure()
>>    4. plt.imshow(label_image,cmap=plt.cm.gray,interpolation='nearest',
>>    origin='lower')
>>    5. plt.title('label_image')
>>    6. plt.show()
>>    7. props = measure.regionprops(label_image,intensity_image
>>    =g_median_bin)
>>    8. label_bound=segmentation.find_boundaries(props,connectivity=1,mode=
>>    'thick',background=0)
>>    9. boundaries=segmentation.mark_boundaries(g_median,label_bound)
>>
>>
>>
>>
>> [image: Inline image 1]
>>
>> On Tue, Dec 1, 2015 at 8:09 PM, Stefan van der Walt <stefanv at berkeley.edu
>> > wrote:
>>
>>> On 2015-12-01 21:00:16, Arctic_python <ejsaiet at alaska.edu> wrote:
>>> >     ndim = label_img.ndim
>>> > AttributeError: 'list' object has no attribute 'ndim'
>>> >
>>> >    1. label_image=measure.label(g_median_bin, background=0) #
>>> g_median_bin
>>> >    is a binary image
>>>
>>> That does not seem to be true, given the error message.
>>>
>>> St?fan
>>>
>>> --
>>> You received this message because you are subscribed to a topic in the
>>> Google Groups "scikit-image" group.
>>> To unsubscribe from this topic, visit
>>> https://groups.google.com/d/topic/scikit-image/PwmizxFahYE/unsubscribe.
>>> To unsubscribe from this group and all its topics, send an email to
>>> scikit-image+unsubscribe at googlegroups.com.
>>> To post to this group, send an email to scikit-image at googlegroups.com.
>>> To view this discussion on the web, visit
>>> https://groups.google.com/d/msgid/scikit-image/87zixt8mie.fsf%40berkeley.edu
>>> .
>>> For more options, visit https://groups.google.com/d/optout.
>>>
>>
>>
>>
>> --
>> Eyal Saiet
>>
>> Project manager
>> Remote sensing and in-situ measurements
>>
>> Geophysical Institute
>> University of Alaska Fairbanks
>> Fairbanks, AK 99775
>> (907) 750 6555 (cell)
>>
>> ejsaiet at alaska.edu
>>
>> --
>> You received this message because you are subscribed to the Google Groups
>> "scikit-image" group.
>> To unsubscribe from this group and stop receiving emails from it, send an
>> email to scikit-image+unsubscribe at googlegroups.com.
>> To post to this group, send email to scikit-image at googlegroups.com.
>> To view this discussion on the web, visit
>> https://groups.google.com/d/msgid/scikit-image/CA%2BysReAKgzF%3DJXEjz7hti8sz0EBS_Hr%3DPaFWTxN6FV-GtROB0w%40mail.gmail.com
>> <https://groups.google.com/d/msgid/scikit-image/CA%2BysReAKgzF%3DJXEjz7hti8sz0EBS_Hr%3DPaFWTxN6FV-GtROB0w%40mail.gmail.com?utm_medium=email&utm_source=footer>
>> .
>>
>> For more options, visit https://groups.google.com/d/optout.
>>
>
> --
> You received this message because you are subscribed to a topic in the
> Google Groups "scikit-image" group.
> To unsubscribe from this topic, visit
> https://groups.google.com/d/topic/scikit-image/PwmizxFahYE/unsubscribe.
> To unsubscribe from this group and all its topics, send an email to
> scikit-image+unsubscribe at googlegroups.com.
> To post to this group, send email to scikit-image at googlegroups.com.
> To view this discussion on the web, visit
> https://groups.google.com/d/msgid/scikit-image/CA%2BJHcKT5TijcW_Xa%3DEJt%2Bdi-o_3Hn5PmuHJzXc0YyM44vFr%2BDA%40mail.gmail.com
> <https://groups.google.com/d/msgid/scikit-image/CA%2BJHcKT5TijcW_Xa%3DEJt%2Bdi-o_3Hn5PmuHJzXc0YyM44vFr%2BDA%40mail.gmail.com?utm_medium=email&utm_source=footer>
> .
>
> For more options, visit https://groups.google.com/d/optout.
>



-- 
Eyal Saiet

Project manager
Remote sensing and in-situ measurements

Geophysical Institute
University of Alaska Fairbanks
Fairbanks, AK 99775
(907) 750 6555 (cell)

ejsaiet at alaska.edu
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From jni.soma at gmail.com  Wed Dec  2 02:38:30 2015
From: jni.soma at gmail.com (Juan Nunez-Iglesias)
Date: Wed, 2 Dec 2015 18:38:30 +1100
Subject: label_boundaries problem with ndim = label_img.ndim
In-Reply-To: <CA+ysReAKgzF=JXEjz7hti8sz0EBS_Hr=PaFWTxN6FV-GtROB0w@mail.gmail.com>
References: <86311586-62f2-40a0-86d6-c0903f8eed25@googlegroups.com>
 <87zixt8mie.fsf@berkeley.edu> <CA+ysReAKgzF=JXEjz7hti8sz0EBS_Hr=PaFWTxN6FV-GtROB0w@mail.gmail.com>
Message-ID: <CA+JHcKT5TijcW_Xa=EJt+di-o_3Hn5PmuHJzXc0YyM44vFr+DA@mail.gmail.com>

Hi Eyal,

You are passing a list of regionprops (props, in your code) to
"find_boundaries", whereas it expects an array: a single image of labeled
objects (label_img, in your code).

Juan.

On Wed, Dec 2, 2015 at 5:33 PM, Eyal Saiet <ejsaiet at alaska.edu> wrote:

> Stefan,
> I do not understand what is not true about the label_image object.
> bellow is the code, in addition I added a plot of the label_image object.
>
>
>
>    1. label_image=measure.label(g_median_bin, background=0)
>    2. label_image +=1
>    3. plt.figure()
>    4. plt.imshow(label_image,cmap=plt.cm.gray,interpolation='nearest',
>    origin='lower')
>    5. plt.title('label_image')
>    6. plt.show()
>    7. props = measure.regionprops(label_image,intensity_image
>    =g_median_bin)
>    8. label_bound=segmentation.find_boundaries(props,connectivity=1,mode=
>    'thick',background=0)
>    9. boundaries=segmentation.mark_boundaries(g_median,label_bound)
>
>
>
>
> [image: Inline image 1]
>
> On Tue, Dec 1, 2015 at 8:09 PM, Stefan van der Walt <stefanv at berkeley.edu>
> wrote:
>
>> On 2015-12-01 21:00:16, Arctic_python <ejsaiet at alaska.edu> wrote:
>> >     ndim = label_img.ndim
>> > AttributeError: 'list' object has no attribute 'ndim'
>> >
>> >    1. label_image=measure.label(g_median_bin, background=0) #
>> g_median_bin
>> >    is a binary image
>>
>> That does not seem to be true, given the error message.
>>
>> St?fan
>>
>> --
>> You received this message because you are subscribed to a topic in the
>> Google Groups "scikit-image" group.
>> To unsubscribe from this topic, visit
>> https://groups.google.com/d/topic/scikit-image/PwmizxFahYE/unsubscribe.
>> To unsubscribe from this group and all its topics, send an email to
>> scikit-image+unsubscribe at googlegroups.com.
>> To post to this group, send an email to scikit-image at googlegroups.com.
>> To view this discussion on the web, visit
>> https://groups.google.com/d/msgid/scikit-image/87zixt8mie.fsf%40berkeley.edu
>> .
>> For more options, visit https://groups.google.com/d/optout.
>>
>
>
>
> --
> Eyal Saiet
>
> Project manager
> Remote sensing and in-situ measurements
>
> Geophysical Institute
> University of Alaska Fairbanks
> Fairbanks, AK 99775
> (907) 750 6555 (cell)
>
> ejsaiet at alaska.edu
>
> --
> You received this message because you are subscribed to the Google Groups
> "scikit-image" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to scikit-image+unsubscribe at googlegroups.com.
> To post to this group, send email to scikit-image at googlegroups.com.
> To view this discussion on the web, visit
> https://groups.google.com/d/msgid/scikit-image/CA%2BysReAKgzF%3DJXEjz7hti8sz0EBS_Hr%3DPaFWTxN6FV-GtROB0w%40mail.gmail.com
> <https://groups.google.com/d/msgid/scikit-image/CA%2BysReAKgzF%3DJXEjz7hti8sz0EBS_Hr%3DPaFWTxN6FV-GtROB0w%40mail.gmail.com?utm_medium=email&utm_source=footer>
> .
>
> For more options, visit https://groups.google.com/d/optout.
>
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From jni.soma at gmail.com  Wed Dec  2 02:59:53 2015
From: jni.soma at gmail.com (Juan Nunez-Iglesias)
Date: Wed, 2 Dec 2015 18:59:53 +1100
Subject: label_boundaries problem with ndim = label_img.ndim
In-Reply-To: <CA+ysReD7NpvQdJgNfk_0h9b43wSEJ1TobPG0jf_MsKj6CGxDcg@mail.gmail.com>
References: <86311586-62f2-40a0-86d6-c0903f8eed25@googlegroups.com>
 <87zixt8mie.fsf@berkeley.edu> <CA+ysReAKgzF=JXEjz7hti8sz0EBS_Hr=PaFWTxN6FV-GtROB0w@mail.gmail.com>
 <CA+JHcKT5TijcW_Xa=EJt+di-o_3Hn5PmuHJzXc0YyM44vFr+DA@mail.gmail.com> <CA+ysReD7NpvQdJgNfk_0h9b43wSEJ1TobPG0jf_MsKj6CGxDcg@mail.gmail.com>
Message-ID: <CA+JHcKRTogJBn4CbNtXFZcZGYXPpN0MR7GM2SZB6esokEUV1MQ@mail.gmail.com>

You don't need to find the boundaries manually before calling
mark_boundaries. From the docstring of mark_boundaries:


Parameters
----------
image : (M, N[, 3]) array
    Grayscale or RGB image.
label_img : (M, N) array of int
    Label array where regions are marked by different integer values.

Currently, you are passing a boolean array to a function that expects an
integer array, which is why it's failing.

In general, it's a good idea to try typing "help(function_name)" when
things are failing to make sure that you are passing in the right
information to the function you're using! (You can then press "q" to exit
help.)

I hope that, erm, helps! =)

Juan.

On Wed, Dec 2, 2015 at 6:46 PM, Eyal Saiet <ejsaiet at alaska.edu> wrote:

> thanks Juan, I have tried that too:
>
>    1. label_image=measure.label(g_median_bin, background=0)
>    2. label_image +=1
>    3. plt.figure()
>    4. plt.imshow(label_image,cmap=plt.cm.gray,interpolation='nearest',
>    origin='lower')
>    5. plt.title('label_image')
>    6. plt.show()
>    7. props=measure.regionprops(label_image,intensity_image=g_median_bin)
>    8. label_bound=segmentation.find_boundaries(label_image,connectivity=1,
>    mode='thick',background=0)
>    9. boundaries=segmentation.mark_boundaries(g_median,label_bound)
>
> Traceback (most recent call last):
>   File attributes_thrash.py", line 127, in <module>
>
> boundaries=segmentation.mark_boundaries(g_median,label_bound)#,color=(1,0,0),
> outline_color=None, mode='outer', background_label=0)
>   File
> "/usr/local/lib/python3.4/dist-packages/skimage/segmentation/boundaries.py",
> line 213, in mark_boundaries
>     background=background_label)
>   File
> "/usr/local/lib/python3.4/dist-packages/skimage/segmentation/boundaries.py",
> line 156, in find_boundaries
>     max_label = np.iinfo(label_img.dtype).max
>   File "/usr/local/lib/python3.4/dist-packages/numpy/core/getlimits.py",
> line 254, in __init__
>     raise ValueError("Invalid integer data type.")
> ValueError: Invalid integer data type.
>
> Process finished with exit code 1
>
>
> On Tue, Dec 1, 2015 at 10:38 PM, Juan Nunez-Iglesias <jni.soma at gmail.com>
> wrote:
>
>> Hi Eyal,
>>
>> You are passing a list of regionprops (props, in your code) to
>> "find_boundaries", whereas it expects an array: a single image of labeled
>> objects (label_img, in your code).
>>
>> Juan.
>>
>> On Wed, Dec 2, 2015 at 5:33 PM, Eyal Saiet <ejsaiet at alaska.edu> wrote:
>>
>>> Stefan,
>>> I do not understand what is not true about the label_image object.
>>> bellow is the code, in addition I added a plot of the label_image object.
>>>
>>>
>>>
>>>    1. label_image=measure.label(g_median_bin, background=0)
>>>    2. label_image +=1
>>>    3. plt.figure()
>>>    4. plt.imshow(label_image,cmap=plt.cm.gray,interpolation='nearest',
>>>    origin='lower')
>>>    5. plt.title('label_image')
>>>    6. plt.show()
>>>    7. props = measure.regionprops(label_image,intensity_image
>>>    =g_median_bin)
>>>    8. label_bound=segmentation.find_boundaries(props,connectivity=1,mode
>>>    ='thick',background=0)
>>>    9. boundaries=segmentation.mark_boundaries(g_median,label_bound)
>>>
>>>
>>>
>>>
>>> [image: Inline image 1]
>>>
>>> On Tue, Dec 1, 2015 at 8:09 PM, Stefan van der Walt <
>>> stefanv at berkeley.edu> wrote:
>>>
>>>> On 2015-12-01 21:00:16, Arctic_python <ejsaiet at alaska.edu> wrote:
>>>> >     ndim = label_img.ndim
>>>> > AttributeError: 'list' object has no attribute 'ndim'
>>>> >
>>>> >    1. label_image=measure.label(g_median_bin, background=0) #
>>>> g_median_bin
>>>> >    is a binary image
>>>>
>>>> That does not seem to be true, given the error message.
>>>>
>>>> St?fan
>>>>
>>>> --
>>>> You received this message because you are subscribed to a topic in the
>>>> Google Groups "scikit-image" group.
>>>> To unsubscribe from this topic, visit
>>>> https://groups.google.com/d/topic/scikit-image/PwmizxFahYE/unsubscribe.
>>>> To unsubscribe from this group and all its topics, send an email to
>>>> scikit-image+unsubscribe at googlegroups.com.
>>>> To post to this group, send an email to scikit-image at googlegroups.com.
>>>> To view this discussion on the web, visit
>>>> https://groups.google.com/d/msgid/scikit-image/87zixt8mie.fsf%40berkeley.edu
>>>> .
>>>> For more options, visit https://groups.google.com/d/optout.
>>>>
>>>
>>>
>>>
>>> --
>>> Eyal Saiet
>>>
>>> Project manager
>>> Remote sensing and in-situ measurements
>>>
>>> Geophysical Institute
>>> University of Alaska Fairbanks
>>> Fairbanks, AK 99775
>>> (907) 750 6555 (cell)
>>>
>>> ejsaiet at alaska.edu
>>>
>>> --
>>> You received this message because you are subscribed to the Google
>>> Groups "scikit-image" group.
>>> To unsubscribe from this group and stop receiving emails from it, send
>>> an email to scikit-image+unsubscribe at googlegroups.com.
>>> To post to this group, send email to scikit-image at googlegroups.com.
>>> To view this discussion on the web, visit
>>> https://groups.google.com/d/msgid/scikit-image/CA%2BysReAKgzF%3DJXEjz7hti8sz0EBS_Hr%3DPaFWTxN6FV-GtROB0w%40mail.gmail.com
>>> <https://groups.google.com/d/msgid/scikit-image/CA%2BysReAKgzF%3DJXEjz7hti8sz0EBS_Hr%3DPaFWTxN6FV-GtROB0w%40mail.gmail.com?utm_medium=email&utm_source=footer>
>>> .
>>>
>>> For more options, visit https://groups.google.com/d/optout.
>>>
>>
>> --
>> You received this message because you are subscribed to a topic in the
>> Google Groups "scikit-image" group.
>> To unsubscribe from this topic, visit
>> https://groups.google.com/d/topic/scikit-image/PwmizxFahYE/unsubscribe.
>> To unsubscribe from this group and all its topics, send an email to
>> scikit-image+unsubscribe at googlegroups.com.
>> To post to this group, send email to scikit-image at googlegroups.com.
>> To view this discussion on the web, visit
>> https://groups.google.com/d/msgid/scikit-image/CA%2BJHcKT5TijcW_Xa%3DEJt%2Bdi-o_3Hn5PmuHJzXc0YyM44vFr%2BDA%40mail.gmail.com
>> <https://groups.google.com/d/msgid/scikit-image/CA%2BJHcKT5TijcW_Xa%3DEJt%2Bdi-o_3Hn5PmuHJzXc0YyM44vFr%2BDA%40mail.gmail.com?utm_medium=email&utm_source=footer>
>> .
>>
>> For more options, visit https://groups.google.com/d/optout.
>>
>
>
>
> --
> Eyal Saiet
>
> Project manager
> Remote sensing and in-situ measurements
>
> Geophysical Institute
> University of Alaska Fairbanks
> Fairbanks, AK 99775
> (907) 750 6555 (cell)
>
> ejsaiet at alaska.edu
>
> --
> You received this message because you are subscribed to the Google Groups
> "scikit-image" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to scikit-image+unsubscribe at googlegroups.com.
> To post to this group, send email to scikit-image at googlegroups.com.
> To view this discussion on the web, visit
> https://groups.google.com/d/msgid/scikit-image/CA%2BysReD7NpvQdJgNfk_0h9b43wSEJ1TobPG0jf_MsKj6CGxDcg%40mail.gmail.com
> <https://groups.google.com/d/msgid/scikit-image/CA%2BysReD7NpvQdJgNfk_0h9b43wSEJ1TobPG0jf_MsKj6CGxDcg%40mail.gmail.com?utm_medium=email&utm_source=footer>
> .
>
> For more options, visit https://groups.google.com/d/optout.
>
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From kshitijsaraogi at gmail.com  Thu Dec  3 04:33:27 2015
From: kshitijsaraogi at gmail.com (Kshitij Saraogi)
Date: Thu, 3 Dec 2015 01:33:27 -0800 (PST)
Subject: New to Contributing
In-Reply-To: <ae0922fb-e744-454f-b6ca-7b23463285ce@googlegroups.com>
References: <12db7f85-8526-471f-943b-cefca08c6c76@googlegroups.com>
 <ae8b8f6f-5f86-4006-bcb9-96ebb08cab42@googlegroups.com>
 <ae0922fb-e744-454f-b6ca-7b23463285ce@googlegroups.com>
Message-ID: <0fba48ed-4939-4fcd-8de9-d07fdfb0880c@googlegroups.com>

Hello,

I really enjoyed working on the issue.
However, I am again stuck at the same situation of picking up an issue.

Can we have a system to label the issues so that it would be helpful for 
new contributors like me to find relevant issues to work on?

Thanks


On Tuesday, December 1, 2015 at 5:13:32 AM UTC+5:30, Kshitij Saraogi wrote:
>
> Hello Vighnesh,
>
> I am working on that issue.
> Thanks for helping me out.
>
> --------
> Kshitij
>
> On Sunday, November 29, 2015 at 9:46:59 AM UTC+5:30, Vighnesh Birodkar 
> wrote:
>>
>> Hello Kshitij
>>
>> https://github.com/scikit-image/scikit-image/issues/1645
>> Seems like a very easy issue to fix.
>>
>> Image Colorization would need a GUI built with the viewer module. But 
>> before you can tackle that, it would be nice to handle some easy fixes to 
>> get you acquainted with the code and conventions.
>>
>> Thanks
>> Vighnesh
>>
>> On Saturday, November 28, 2015 at 11:58:21 AM UTC-5, Kshitij Saraogi 
>> wrote:
>>>
>>> Hello,
>>>
>>> I am Kshitij Saraogi, a second year under-graduate student at IIT 
>>> Kharagpur.
>>> I find scikit-image really intriguing and I would like to contribute to 
>>> it.
>>>
>>> I went through the Issues section on GitHub but I am having a hard time 
>>> finding an issue to get started
>>> Also, while going through the list of "Requested Features", I read about 
>>> Image Colorisation.
>>> I would like to work on this.
>>>
>>> So, I would really appreciate if someone can guide me.
>>>
>>> Thanks
>>> Kshitij Saraogi
>>>
>>
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From stefanv at berkeley.edu  Thu Dec  3 16:24:40 2015
From: stefanv at berkeley.edu (=?UTF-8?Q?St=C3=A9fan_van_der_Walt?=)
Date: Thu, 3 Dec 2015 13:24:40 -0800
Subject: New to Contributing
In-Reply-To: <0fba48ed-4939-4fcd-8de9-d07fdfb0880c@googlegroups.com>
References: <12db7f85-8526-471f-943b-cefca08c6c76@googlegroups.com>
 <ae8b8f6f-5f86-4006-bcb9-96ebb08cab42@googlegroups.com> <ae0922fb-e744-454f-b6ca-7b23463285ce@googlegroups.com>
 <0fba48ed-4939-4fcd-8de9-d07fdfb0880c@googlegroups.com>
Message-ID: <CABDkGQ=t1jSA6K_DKpV4iCC5r1od4o2O_jVdMtBsi68Uqzj9nA@mail.gmail.com>

On Thu, Dec 3, 2015 at 1:33 AM, Kshitij Saraogi
<kshitijsaraogi at gmail.com> wrote:
> Can we have a system to label the issues so that it would be helpful for
> new contributors like me to find relevant issues to work on?

Check out the 'easy' and 'sprint' labels.

St?fan


From steven.silvester at gmail.com  Sat Dec  5 11:36:10 2015
From: steven.silvester at gmail.com (Steven Silvester)
Date: Sat, 5 Dec 2015 08:36:10 -0800 (PST)
Subject: Strange Travis error on #1794
In-Reply-To: <7ad34791-0059-4ca2-a86a-f1138488748f@googlegroups.com>
References: <CABDkGQ=mYOXhpPovAcXmDkcEaRXT9u0iQN-xcJWPKCSrDrdnsA@mail.gmail.com>
 <565E1C40.2000608@gmail.com>
 <7ad34791-0059-4ca2-a86a-f1138488748f@googlegroups.com>
Message-ID: <77480e10-7a68-4752-b56a-4786c36ed0c3@googlegroups.com>

Found it, see https://github.com/scikit-image/scikit-image/pull/1800.

On Tuesday, December 1, 2015 at 5:00:22 PM UTC-6, Josh Warner wrote:
>
> Per @blink1037's Sphinx guide at 
> https://github.com/scikit-image/scikit-image/blob/master/doc/README.md my 
> best guess is it has to do with the references in 
> https://github.com/scikit-image/scikit-image/blob/master/skimage/draw/_draw.pyx 
> though none actually appear to be malformatted on a cursory glance.
>
> On Tuesday, December 1, 2015 at 4:18:16 PM UTC-6, Jonathan Helmus wrote:
>>
>> On 12/01/2015 03:26 PM, St?fan van der Walt wrote: 
>> > It looks like the docs build is breaking unrelated to #1794: 
>> > 
>> > https://travis-ci.org/scikit-image/scikit-image/jobs/94241837 
>> > 
>> > Any ideas? 
>> > 
>> Sphinx 1.3.2 was released a few days back, could something in this 
>> release have broken the doc build? 
>>
>>     - Jonathan Helmus 
>>
>
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From stefanv at berkeley.edu  Mon Dec  7 13:06:09 2015
From: stefanv at berkeley.edu (=?UTF-8?Q?St=C3=A9fan_van_der_Walt?=)
Date: Mon, 7 Dec 2015 10:06:09 -0800
Subject: Release sprint, Thursday/Friday 10/11 Dec
Message-ID: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com>

Hi, everyone

It is time to do some final preparations for the end-of-year, holiday
edition of scikit-image! This coming Thursday and Friday, please join me in
a sprint to round up some final nagging issues before we tag 0.12.

Looking forward to seeing you on Gitter!

St?fan
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From stefanv at berkeley.edu  Mon Dec  7 14:44:56 2015
From: stefanv at berkeley.edu (=?UTF-8?Q?St=C3=A9fan_van_der_Walt?=)
Date: Mon, 7 Dec 2015 11:44:56 -0800
Subject: Release sprint, Thursday/Friday 10/11 Dec
In-Reply-To: <1093037848394961530@unknownmsgid>
References: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com>
 <1093037848394961530@unknownmsgid>
Message-ID: <CABDkGQ=2ipg4kGjhEi2MEFV1WVxi1myidcaFqQtj0H6msKkhYA@mail.gmail.com>

On Mon, Dec 7, 2015 at 11:31 AM, Johannes Sch?nberger <jsch at demuc.de> wrote:
> Sounds good, but I won't be able to join you this time. About to move back
> to Europe this weekend.

Good luck with the move, Johannes!

St?fan


From stefanv at berkeley.edu  Mon Dec  7 15:26:22 2015
From: stefanv at berkeley.edu (=?UTF-8?Q?St=C3=A9fan_van_der_Walt?=)
Date: Mon, 7 Dec 2015 12:26:22 -0800
Subject: Release sprint, Thursday/Friday 10/11 Dec
In-Reply-To: <20151207202350.GA523984@phare.normalesup.org>
References: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com>
 <20151207202350.GA523984@phare.normalesup.org>
Message-ID: <CABDkGQm_p7Dhci2vp89xz8SPRjXg0GwZo3kV2TQfDZeaX3wQ2g@mail.gmail.com>

Hi Emmanuelle

On Mon, Dec 7, 2015 at 12:23 PM, Emmanuelle Gouillart
<emmanuelle.gouillart at nsup.org> wrote:
> great idea! I'll join in the evenings from Paris, so that the timing
> won't be too bad for chatting with California!

Fantastic, thank you!

> I had a quick look at open issues and pull requests tagged for 0.12
> milestone, I don't know if all important issues have been tagged though.
> I can see that Travis is still failing on most pull requests, any hope to
> fix this before the release?

No, I fear the triaging is very much incomplete.

Josh, Warren, Matthew, and others are working on fixing the Travis
issues (thanks very much for jumping in, everyone).

St?fan


From jsch at demuc.de  Mon Dec  7 14:31:54 2015
From: jsch at demuc.de (=?UTF-8?Q?Johannes_Sch=C3=B6nberger?=)
Date: Mon, 7 Dec 2015 14:31:54 -0500
Subject: Release sprint, Thursday/Friday 10/11 Dec
In-Reply-To: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com>
References: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com>
Message-ID: <1093037848394961530@unknownmsgid>

Hi,

Sounds good, but I won't be able to join you this time. About to move back
to Europe this weekend.

Have fun!

On Dec 7, 2015, at 13:06, St?fan van der Walt <stefanv at berkeley.edu> wrote:

Hi, everyone

It is time to do some final preparations for the end-of-year, holiday
edition of scikit-image! This coming Thursday and Friday, please join me in
a sprint to round up some final nagging issues before we tag 0.12.

Looking forward to seeing you on Gitter!

St?fan

-- 
You received this message because you are subscribed to the Google Groups
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<https://groups.google.com/d/msgid/scikit-image/CABDkGQ%3DD%2BWMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ%40mail.gmail.com?utm_medium=email&utm_source=footer>
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From emmanuelle.gouillart at nsup.org  Mon Dec  7 15:23:50 2015
From: emmanuelle.gouillart at nsup.org (Emmanuelle Gouillart)
Date: Mon, 7 Dec 2015 21:23:50 +0100
Subject: Release sprint, Thursday/Friday 10/11 Dec
In-Reply-To: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com>
References: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com>
Message-ID: <20151207202350.GA523984@phare.normalesup.org>

Hi St??fan,

great idea! I'll join in the evenings from Paris, so that the timing
won't be too bad for chatting with California!  

I had a quick look at open issues and pull requests tagged for 0.12
milestone, I don't know if all important issues have been tagged though.
I can see that Travis is still failing on most pull requests, any hope to
fix this before the release?

Cheers,
Emma



On Mon, Dec 07, 2015 at 10:06:09AM -0800, St??fan van der Walt wrote:
> Hi, everyone

> It is time to do some final preparations for the end-of-year, holiday edition
> of scikit-image! This coming Thursday and Friday, please join me in a sprint to
> round up some final nagging issues before we tag 0.12.

> Looking forward to seeing you on Gitter!

> St??fan


From amitbhatkal12 at gmail.com  Tue Dec  8 06:25:59 2015
From: amitbhatkal12 at gmail.com (Amit Bhatkal)
Date: Tue, 8 Dec 2015 03:25:59 -0800 (PST)
Subject: Face detection
In-Reply-To: <CABDkGQkZ+34ixHUkg_uSxK4UF6L-1qeY3RJqpM7JrXQKd2DZpA@mail.gmail.com>
References: <CABDkGQkZ+34ixHUkg_uSxK4UF6L-1qeY3RJqpM7JrXQKd2DZpA@mail.gmail.com>
Message-ID: <eaf4dc15-da6f-45fc-ba0a-0d35a45f02e8@googlegroups.com>


>
> Hi Stefan ,
>
  I have been using python for developing simple image processing 
applications . I have used skimage as well. I would love to contribute to a 
project which involves image processing and machine learning but most 
importantly I want to gain an experience of working with open-source 
communities.

I am interested in contributing to the Face Detection project. It would be 
helpful if I can get some tasks/ references / coding guidelines so that I 
can get started.

Thank you 

Regards,
Amit 
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From stefanv at berkeley.edu  Tue Dec  8 14:04:39 2015
From: stefanv at berkeley.edu (=?UTF-8?Q?St=C3=A9fan_van_der_Walt?=)
Date: Tue, 8 Dec 2015 11:04:39 -0800
Subject: Face detection
In-Reply-To: <eaf4dc15-da6f-45fc-ba0a-0d35a45f02e8@googlegroups.com>
References: <CABDkGQkZ+34ixHUkg_uSxK4UF6L-1qeY3RJqpM7JrXQKd2DZpA@mail.gmail.com>
 <eaf4dc15-da6f-45fc-ba0a-0d35a45f02e8@googlegroups.com>
Message-ID: <CABDkGQmMR+j5iF-RcuvV1FowXAav9KRxO=gB22HfH7x0LjcU2Q@mail.gmail.com>

Hi Amit

On Tue, Dec 8, 2015 at 3:25 AM, Amit Bhatkal <amitbhatkal12 at gmail.com> wrote:
> I am interested in contributing to the Face Detection project. It would be
> helpful if I can get some tasks/ references / coding guidelines so that I
> can get started.

The face detection project was completed as a Google Summer of Code
project, but there are many other ways to contribute!  For one, you
can help us to prepare for the upcoming 0.12 release by trying to
close any issues still open.

Thanks for helping out!

Best regards
St?fan


From amitbhatkal12 at gmail.com  Tue Dec  8 23:36:58 2015
From: amitbhatkal12 at gmail.com (Amit Bhatkal)
Date: Wed, 9 Dec 2015 10:06:58 +0530
Subject: Face detection
In-Reply-To: <CABDkGQmMR+j5iF-RcuvV1FowXAav9KRxO=gB22HfH7x0LjcU2Q@mail.gmail.com>
References: <CABDkGQkZ+34ixHUkg_uSxK4UF6L-1qeY3RJqpM7JrXQKd2DZpA@mail.gmail.com>
	<eaf4dc15-da6f-45fc-ba0a-0d35a45f02e8@googlegroups.com>
	<CABDkGQmMR+j5iF-RcuvV1FowXAav9KRxO=gB22HfH7x0LjcU2Q@mail.gmail.com>
Message-ID: <CAP=8q9ftvb5ffyFV3Q0J_mo_UHPLOQU4Wy+0n+BZvyxLnJWd1w@mail.gmail.com>

Thank you Stefan. I will have a look at the issues and contribute wherever
I can. Can you please point me to the page containing the issues.

Regards,
Amit

On Wed, Dec 9, 2015 at 12:34 AM, St?fan van der Walt <stefanv at berkeley.edu>
wrote:

> Hi Amit
>
> On Tue, Dec 8, 2015 at 3:25 AM, Amit Bhatkal <amitbhatkal12 at gmail.com>
> wrote:
> > I am interested in contributing to the Face Detection project. It would
> be
> > helpful if I can get some tasks/ references / coding guidelines so that I
> > can get started.
>
> The face detection project was completed as a Google Summer of Code
> project, but there are many other ways to contribute!  For one, you
> can help us to prepare for the upcoming 0.12 release by trying to
> close any issues still open.
>
> Thanks for helping out!
>
> Best regards
> St?fan
>
> --
> You received this message because you are subscribed to the Google Groups
> "scikit-image" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to scikit-image+unsubscribe at googlegroups.com.
> To post to this group, send an email to scikit-image at googlegroups.com.
> To view this discussion on the web, visit
> https://groups.google.com/d/msgid/scikit-image/CABDkGQmMR%2Bj5iF-RcuvV1FowXAav9KRxO%3DgB22HfH7x0LjcU2Q%40mail.gmail.com
> .
> For more options, visit https://groups.google.com/d/optout.
>
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From siqueiraaf at gmail.com  Thu Dec 10 09:17:57 2015
From: siqueiraaf at gmail.com (Alexandre Fioravante de Siqueira)
Date: Thu, 10 Dec 2015 06:17:57 -0800 (PST)
Subject: Release sprint, Thursday/Friday 10/11 Dec
In-Reply-To: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com>
References: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com>
Message-ID: <11bd4288-6d0d-4eb7-865a-f6268e2bb3fd@googlegroups.com>

Hi St?fan and everyone!
I would really like to help, but my Python experience is not so great. What 
could I do?
Thank you very much for all your efforts on bringing that amazing software 
to all of us!

Alex

Em segunda-feira, 7 de dezembro de 2015 16:06:12 UTC-2, stefanv escreveu:
>
> Hi, everyone
>
> It is time to do some final preparations for the end-of-year, holiday 
> edition of scikit-image! This coming Thursday and Friday, please join me in 
> a sprint to round up some final nagging issues before we tag 0.12.
>
> Looking forward to seeing you on Gitter! 
>
> St?fan 
>
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From stefanv at berkeley.edu  Thu Dec 10 11:05:15 2015
From: stefanv at berkeley.edu (=?UTF-8?Q?St=C3=A9fan_van_der_Walt?=)
Date: Thu, 10 Dec 2015 08:05:15 -0800
Subject: Release sprint, Thursday/Friday 10/11 Dec
In-Reply-To: <11bd4288-6d0d-4eb7-865a-f6268e2bb3fd@googlegroups.com>
References: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com>
	<11bd4288-6d0d-4eb7-865a-f6268e2bb3fd@googlegroups.com>
Message-ID: <CABDkGQmaT1EX-bu=+nkuOqnYcaEdC6yiYLOK_y7bEPEU9_4woA@mail.gmail.com>

Hi, Alexandre!

Thank you very much for offering to help. For today, please head over to
our GitHub repository and have a look at outstanding issues and pull
requests, especially the ones tagged with the "0.12" milestone.

Thanks,
St?fan
On Dec 10, 2015 6:17 AM, "Alexandre Fioravante de Siqueira" <
siqueiraaf at gmail.com> wrote:

> Hi St?fan and everyone!
> I would really like to help, but my Python experience is not so great.
> What could I do?
> Thank you very much for all your efforts on bringing that amazing software
> to all of us!
>
> Alex
>
> Em segunda-feira, 7 de dezembro de 2015 16:06:12 UTC-2, stefanv escreveu:
>>
>> Hi, everyone
>>
>> It is time to do some final preparations for the end-of-year, holiday
>> edition of scikit-image! This coming Thursday and Friday, please join me in
>> a sprint to round up some final nagging issues before we tag 0.12.
>>
>> Looking forward to seeing you on Gitter!
>>
>> St?fan
>>
> --
> You received this message because you are subscribed to the Google Groups
> "scikit-image" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to scikit-image+unsubscribe at googlegroups.com.
> To post to this group, send email to scikit-image at googlegroups.com.
> To view this discussion on the web, visit
> https://groups.google.com/d/msgid/scikit-image/11bd4288-6d0d-4eb7-865a-f6268e2bb3fd%40googlegroups.com
> <https://groups.google.com/d/msgid/scikit-image/11bd4288-6d0d-4eb7-865a-f6268e2bb3fd%40googlegroups.com?utm_medium=email&utm_source=footer>
> .
> For more options, visit https://groups.google.com/d/optout.
>
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From siqueiraaf at gmail.com  Thu Dec 10 16:04:48 2015
From: siqueiraaf at gmail.com (Alexandre Fioravante de Siqueira)
Date: Thu, 10 Dec 2015 13:04:48 -0800 (PST)
Subject: Release sprint, Thursday/Friday 10/11 Dec
In-Reply-To: <CABDkGQmaT1EX-bu=+nkuOqnYcaEdC6yiYLOK_y7bEPEU9_4woA@mail.gmail.com>
References: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com>
 <11bd4288-6d0d-4eb7-865a-f6268e2bb3fd@googlegroups.com>
 <CABDkGQmaT1EX-bu=+nkuOqnYcaEdC6yiYLOK_y7bEPEU9_4woA@mail.gmail.com>
Message-ID: <7b2ade9b-5514-4ac8-8788-a05658f6fbc8@googlegroups.com>

Hi St?fan,
I am looking on the "white space" issue 
(https://github.com/scikit-image/scikit-image/issues/1773), rewriting some 
code to achieve PEP 8 style and wondering on that spaces, but I'm really 
frightened on pulling my code.
Is there a way to check the structure of the example pages before pulling 
it?
Thank you very much!

Alex

Em quinta-feira, 10 de dezembro de 2015 14:05:18 UTC-2, stefanv escreveu:
>
> Hi, Alexandre! 
>
> Thank you very much for offering to help. For today, please head over to 
> our GitHub repository and have a look at outstanding issues and pull 
> requests, especially the ones tagged with the "0.12" milestone. 
>
> Thanks, 
> St?fan 
> On Dec 10, 2015 6:17 AM, "Alexandre Fioravante de Siqueira" <
> sique... at gmail.com <javascript:>> wrote:
>
>> Hi St?fan and everyone!
>> I would really like to help, but my Python experience is not so great. 
>> What could I do?
>> Thank you very much for all your efforts on bringing that amazing 
>> software to all of us!
>>
>> Alex
>>
>> Em segunda-feira, 7 de dezembro de 2015 16:06:12 UTC-2, stefanv escreveu:
>>>
>>> Hi, everyone
>>>
>>> It is time to do some final preparations for the end-of-year, holiday 
>>> edition of scikit-image! This coming Thursday and Friday, please join me in 
>>> a sprint to round up some final nagging issues before we tag 0.12.
>>>
>>> Looking forward to seeing you on Gitter! 
>>>
>>> St?fan 
>>>
>> -- 
>> You received this message because you are subscribed to the Google Groups 
>> "scikit-image" group.
>> To unsubscribe from this group and stop receiving emails from it, send an 
>> email to scikit-image... at googlegroups.com <javascript:>.
>> To post to this group, send email to scikit... at googlegroups.com 
>> <javascript:>.
>> To view this discussion on the web, visit 
>> https://groups.google.com/d/msgid/scikit-image/11bd4288-6d0d-4eb7-865a-f6268e2bb3fd%40googlegroups.com 
>> <https://groups.google.com/d/msgid/scikit-image/11bd4288-6d0d-4eb7-865a-f6268e2bb3fd%40googlegroups.com?utm_medium=email&utm_source=footer>
>> .
>> For more options, visit https://groups.google.com/d/optout.
>>
>
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From siqueiraaf at gmail.com  Thu Dec 10 16:44:31 2015
From: siqueiraaf at gmail.com (Alexandre Fioravante de Siqueira)
Date: Thu, 10 Dec 2015 13:44:31 -0800 (PST)
Subject: Release sprint, Thursday/Friday 10/11 Dec
In-Reply-To: <35C78357-674F-46F9-B667-DE286AF7B392@googlemail.com>
References: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com> <11bd4288-6d0d-4eb7-865a-f6268e2bb3fd@googlegroups.com> <CABDkGQmaT1EX-bu=+nkuOqnYcaEdC6yiYLOK_y7bEPEU9_4woA@mail.gmail.com> <7b2ade9b-5514-4ac8-8788-a05658f6fbc8@googlegroups.com>
 <35C78357-674F-46F9-B667-DE286AF7B392@googlemail.com>
Message-ID: <03276ddd-c5b2-4811-8e1b-6899018182a0@googlegroups.com>

Hi Kevin,
thank you very much! I'll check that!
Thanks again,

Alex

Em quinta-feira, 10 de dezembro de 2015 19:42:01 UTC-2, Kevin Keraudren 
escreveu:
>
> Hi Alex,
>
> You may want to address this issue as well, considering it contains the 
> answer to your question:
>
> (go in to the docs directory and type ?make')
>
> ?Documentation does not explain how to build the docs"
> https://github.com/scikit-image/scikit-image/issues/1591
>
> If you build the doc, you will also build the example pages!
>
> Kind Regards,
>
> Kevin
>
>
> On 10 Dec 2015, at 21:04, Alexandre Fioravante de Siqueira <
> sique... at gmail.com <javascript:>> wrote:
>
> Hi St?fan,
> I am looking on the "white space" issue (
> https://github.com/scikit-image/scikit-image/issues/1773), rewriting some 
> code to achieve PEP 8 style and wondering on that spaces, but I'm really 
> frightened on pulling my code.
> Is there a way to check the structure of the example pages before pulling 
> it?
> Thank you very much!
>
> Alex
>
> Em quinta-feira, 10 de dezembro de 2015 14:05:18 UTC-2, stefanv escreveu:
>>
>> Hi, Alexandre! 
>>
>> Thank you very much for offering to help. For today, please head over to 
>> our GitHub repository and have a look at outstanding issues and pull 
>> requests, especially the ones tagged with the "0.12" milestone. 
>>
>> Thanks, 
>> St?fan 
>> On Dec 10, 2015 6:17 AM, "Alexandre Fioravante de Siqueira" <
>> sique... at gmail.com> wrote:
>>
>>> Hi St?fan and everyone!
>>> I would really like to help, but my Python experience is not so great. 
>>> What could I do?
>>> Thank you very much for all your efforts on bringing that amazing 
>>> software to all of us!
>>>
>>> Alex
>>>
>>> Em segunda-feira, 7 de dezembro de 2015 16:06:12 UTC-2, stefanv escreveu:
>>>>
>>>> Hi, everyone
>>>>
>>>> It is time to do some final preparations for the end-of-year, holiday 
>>>> edition of scikit-image! This coming Thursday and Friday, please join me in 
>>>> a sprint to round up some final nagging issues before we tag 0.12.
>>>>
>>>> Looking forward to seeing you on Gitter! 
>>>>
>>>> St?fan 
>>>>
>>>
>>> -- 
>>> You received this message because you are subscribed to the Google 
>>> Groups "scikit-image" group.
>>> To unsubscribe from this group and stop receiving emails from it, send 
>>> an email to scikit-image... at googlegroups.com.
>>> To post to this group, send email to scikit... at googlegroups.com.
>>> To view this discussion on the web, visit 
>>> https://groups.google.com/d/msgid/scikit-image/11bd4288-6d0d-4eb7-865a-f6268e2bb3fd%40googlegroups.com 
>>> <https://groups.google.com/d/msgid/scikit-image/11bd4288-6d0d-4eb7-865a-f6268e2bb3fd%40googlegroups.com?utm_medium=email&utm_source=footer>
>>> .
>>> For more options, visit https://groups.google.com/d/optout.
>>>
>>
> -- 
> You received this message because you are subscribed to the Google Groups 
> "scikit-image" group.
> To unsubscribe from this group and stop receiving emails from it, send an 
> email to scikit-image... at googlegroups.com <javascript:>.
> To post to this group, send email to scikit... at googlegroups.com 
> <javascript:>.
> To view this discussion on the web, visit 
> https://groups.google.com/d/msgid/scikit-image/7b2ade9b-5514-4ac8-8788-a05658f6fbc8%40googlegroups.com 
> <https://groups.google.com/d/msgid/scikit-image/7b2ade9b-5514-4ac8-8788-a05658f6fbc8%40googlegroups.com?utm_medium=email&utm_source=footer>
> .
> For more options, visit https://groups.google.com/d/optout.
>
>
>
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From kevin.keraudren at googlemail.com  Thu Dec 10 16:41:58 2015
From: kevin.keraudren at googlemail.com (Kevin Keraudren)
Date: Thu, 10 Dec 2015 21:41:58 +0000
Subject: Release sprint, Thursday/Friday 10/11 Dec
In-Reply-To: <7b2ade9b-5514-4ac8-8788-a05658f6fbc8@googlegroups.com>
References: <CABDkGQ=D+WMP1MKyjWUTcCRSP-d95uv6KH6yhs1Oy6gha_yksQ@mail.gmail.com> <11bd4288-6d0d-4eb7-865a-f6268e2bb3fd@googlegroups.com> <CABDkGQmaT1EX-bu=+nkuOqnYcaEdC6yiYLOK_y7bEPEU9_4woA@mail.gmail.com> <7b2ade9b-5514-4ac8-8788-a05658f6fbc8@googlegroups.com>
Message-ID: <35C78357-674F-46F9-B667-DE286AF7B392@googlemail.com>

Hi Alex,

You may want to address this issue as well, considering it contains the answer to your question:

(go in to the docs directory and type ?make')

?Documentation does not explain how to build the docs"
https://github.com/scikit-image/scikit-image/issues/1591 <https://github.com/scikit-image/scikit-image/issues/1591>

If you build the doc, you will also build the example pages!

Kind Regards,

Kevin


> On 10 Dec 2015, at 21:04, Alexandre Fioravante de Siqueira <siqueiraaf at gmail.com> wrote:
> 
> Hi St?fan,
> I am looking on the "white space" issue (https://github.com/scikit-image/scikit-image/issues/1773), rewriting some code to achieve PEP 8 style and wondering on that spaces, but I'm really frightened on pulling my code.
> Is there a way to check the structure of the example pages before pulling it?
> Thank you very much!
> 
> Alex
> 
> Em quinta-feira, 10 de dezembro de 2015 14:05:18 UTC-2, stefanv escreveu:
> Hi, Alexandre!
> 
> Thank you very much for offering to help. For today, please head over to our GitHub repository and have a look at outstanding issues and pull requests, especially the ones tagged with the "0.12" milestone.
> 
> Thanks, 
> St?fan
> 
> On Dec 10, 2015 6:17 AM, "Alexandre Fioravante de Siqueira" <sique... at gmail.com <javascript:>> wrote:
> Hi St?fan and everyone!
> I would really like to help, but my Python experience is not so great. What could I do?
> Thank you very much for all your efforts on bringing that amazing software to all of us!
> 
> Alex
> 
> Em segunda-feira, 7 de dezembro de 2015 16:06:12 UTC-2, stefanv escreveu:
> Hi, everyone
> 
> It is time to do some final preparations for the end-of-year, holiday edition of scikit-image! This coming Thursday and Friday, please join me in a sprint to round up some final nagging issues before we tag 0.12.
> 
> Looking forward to seeing you on Gitter!
> 
> St?fan
> 
> 
> -- 
> You received this message because you are subscribed to the Google Groups "scikit-image" group.
> To unsubscribe from this group and stop receiving emails from it, send an email to scikit-image... at googlegroups.com <javascript:>.
> To post to this group, send email to scikit... at googlegroups.com <javascript:>.
> To view this discussion on the web, visit https://groups.google.com/d/msgid/scikit-image/11bd4288-6d0d-4eb7-865a-f6268e2bb3fd%40googlegroups.com <https://groups.google.com/d/msgid/scikit-image/11bd4288-6d0d-4eb7-865a-f6268e2bb3fd%40googlegroups.com?utm_medium=email&utm_source=footer>.
> For more options, visit https://groups.google.com/d/optout <https://groups.google.com/d/optout>.
> 
> -- 
> You received this message because you are subscribed to the Google Groups "scikit-image" group.
> To unsubscribe from this group and stop receiving emails from it, send an email to scikit-image+unsubscribe at googlegroups.com <mailto:scikit-image+unsubscribe at googlegroups.com>.
> To post to this group, send email to scikit-image at googlegroups.com <mailto:scikit-image at googlegroups.com>.
> To view this discussion on the web, visit https://groups.google.com/d/msgid/scikit-image/7b2ade9b-5514-4ac8-8788-a05658f6fbc8%40googlegroups.com <https://groups.google.com/d/msgid/scikit-image/7b2ade9b-5514-4ac8-8788-a05658f6fbc8%40googlegroups.com?utm_medium=email&utm_source=footer>.
> For more options, visit https://groups.google.com/d/optout <https://groups.google.com/d/optout>.

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