removing small connected components

Juan Nunez-Iglesias jni.soma at gmail.com
Wed Feb 6 08:10:07 EST 2013


Anyone? Bueller? Bueller? =)

On Thu, Jan 31, 2013 at 2:19 PM, Juan Nunez-Iglesias <jni.soma at gmail.com>wrote:

> Hi guys,
>
> For my own segmentation package, I wrote a small function to remove small
> connected components in an ndarray. You can see it here:
>
> https://github.com/janelia-flyem/gala/blob/master/gala/morpho.py#L72
>
> I've been looking at things that could be moved from there to skimage and
> I thought that was a prime candidate (I think you actually do the same
> thing in one of the examples, but without making it into a function). Any
> interest in a PR?
>
> There's other nd operations in there: morphological reconstruction,
> h-minima, regional (aka local) minima, and impose minima. Let me know if
> you would like any of these for inclusion in skimage...
>
> Thanks,
>
> Juan.
>
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