[issue27898] regexp performance degradation between 2.7.6 and 2.7.12
Steve Newcomb
report at bugs.python.org
Wed Aug 31 11:15:16 EDT 2016
Steve Newcomb added the comment:
Having disabled multiprocessing, I ran new, more extensive profiles.
The biggest problem is in re.sub(), which in our codebase evidently uses
3 times as much processing time in Python 2.7.12 as it does in Python 2.7.6.
I'm attaching the profile reports for both runs.
Here's a possibly-relevant question: Are regular expressions now being
unnecessarily recompiled by re.sub()?
We never call the sub() method of a compiled regular expression; we
always call sub() as "re.sub()" and pass the compiled regular expression
as the first argument. Years ago when our code was first developed,
re.sub() did not always work correctly when invoked as a method of a
compiled regular expression object. I don't know if that's still a
problem, but the problem persisted for years, and so we have a
convention of always invoking sub() at the module level.
Steve Newcomb
----------
Added file: http://bugs.python.org/file44301/newcomb_profile_report_for_2.7.6.txt
Added file: http://bugs.python.org/file44302/newcomb_profile_report_for_2.7.12.txt
_______________________________________
Python tracker <report at bugs.python.org>
<http://bugs.python.org/issue27898>
_______________________________________
-------------- next part --------------
elapsed time for this tmloom2 111 run: 5:30:12.000096
Tue Aug 30 20:23:42 2016 /tmp/profile
2400842755 function calls (2369888195 primitive calls) in 19792.414 seconds
Ordered by: internal time
List reduced from 1444 to 1000 due to restriction <1000>
ncalls tottime percall cumtime percall filename:lineno(function)
114130955/107552497 9786.403 0.000 10012.707 0.000 {method 'sub' of '_sre.SRE_Pattern' objects}
20666 2627.897 0.127 2627.897 0.127 {posix.read}
17337 2086.847 0.120 2086.847 0.120 {posix.fork}
1252506/2518 1019.741 0.001 1195.594 0.475 /home2/rackdev/ch_tools/ch_pyRXPU.py:944(_mungeTree)
278586104 571.334 0.000 727.004 0.000 /usr/lib/python2.7/re.py:204(escape)
6902482 414.061 0.000 1483.510 0.000 /home2/rackdev/tmloom/lib/irs_ingestinstances.py:3694(getParsedEventFromRastLines)
20692 304.518 0.015 304.518 0.015 {built-in method poll}
117595675 271.993 0.000 526.168 0.000 /usr/lib/python2.7/re.py:226(_compile)
113443088/106864630 236.297 0.000 10574.029 0.000 /usr/lib/python2.7/re.py:144(sub)
144367134 203.033 0.000 203.033 0.000 {method 'match' of '_sre.SRE_Pattern' objects}
1540301 199.881 0.000 953.088 0.001 {map}
8666 195.561 0.023 2862.071 0.330 /home2/rackdev/tmloom/lib/irs_ingestinstances.py:3268(xmlLinesFromRastLines)
278594444 155.683 0.000 155.683 0.000 {method 'join' of 'unicode' objects}
210854507 134.344 0.000 134.344 0.000 {method 'group' of '_sre.SRE_Match' objects}
135243 126.155 0.001 126.155 0.001 {method 'close' of 'file' objects}
211338364/211155997 122.582 0.000 122.791 0.000 {len}
157225571 99.753 0.000 99.753 0.000 {method 'append' of 'list' objects}
135840001 90.105 0.000 90.105 0.000 {method 'get' of 'dict' objects}
142554270 89.614 0.000 89.614 0.000 {isinstance}
2696614/8666 49.235 0.000 264.981 0.031 /home2/rackdev/tmloom/lib/utils.py:5148(_prettyXml)
9418158/1287653 36.022 0.000 96.870 0.000 /usr/lib/python2.7/copy.py:145(deepcopy)
24092606 32.078 0.000 32.078 0.000 {method 'search' of '_sre.SRE_Pattern' objects}
8666 30.335 0.004 40.220 0.005 /home2/rackdev/tmloom/lib/pretty.py:3726(normalizeSpacesInMappedContent)
39867633 26.579 0.000 26.579 0.000 {method 'lower' of 'unicode' objects}
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8666 23.644 0.003 19653.115 2.268 /home2/rackdev/tmloom/lib/pretty.py:878(htmlMill)
16235736 21.876 0.000 31.206 0.000 /home2/rackdev/tmloom/lib/utils.py:493(__call__)
2696614 21.283 0.000 109.736 0.000 /home2/rackdev/tmloom/lib/ch_elementtree.py:1209(_start_list)
4230978 21.211 0.000 35.188 0.000 /home2/rackdev/ch_tools/walshDtd.py:1986(__adjustCasesOfMarkupInXmlString)
1597725 20.873 0.000 75.534 0.000 /home2/rackdev/tmloom/lib/utils.py:5411(pcDataProc)
2696614 20.651 0.000 66.980 0.000 /home2/rackdev/tmloom/lib/utils.py:5082(attrString)
7665269 20.002 0.000 29.587 0.000 /usr/lib/python2.7/copy.py:267(_keep_alive)
5141416 19.670 0.000 89.265 0.000 /home2/rackdev/ch_tools/walshDtd.py:1979(_adjustCasesOfMarkupInXmlString)
5286414 18.378 0.000 42.458 0.000 /home2/rackdev/ch_tools/walshDtd.py:2209(__modifyAttValues)
16729760 18.352 0.000 18.352 0.000 {method 'join' of 'str' objects}
1277219/29749 17.518 0.000 67.948 0.002 /home2/rackdev/ch_tools/ch_pyRXPU.py:1344(_tree2Xml)
18227645 17.105 0.000 17.105 0.000 {method 'replace' of 'unicode' objects}
2644088 16.356 0.000 100.408 0.000 /home2/rackdev/ch_tools/walshDtd.py:2257(_modifyAttValues)
17786150 16.028 0.000 16.028 0.000 {method 'startswith' of 'unicode' objects}
8790872 15.900 0.000 26.190 0.000 /home2/rackdev/ch_tools/ch_urinorm2.py:1171(_ordChr)
7667795 14.696 0.000 22.876 0.000 /usr/lib/python2.7/sre_parse.py:182(__next)
346148/29480 14.325 0.000 66.338 0.002 /usr/lib/python2.7/sre_parse.py:379(_parse)
7878816 13.345 0.000 80.230 0.000 /home2/rackdev/tmloom/lib/utils.py:4835(interpretBackslashes)
2075606 12.529 0.000 12.529 0.000 {method 'write' of 'file' objects}
4035073 12.237 0.000 12.237 0.000 {method 'groupdict' of '_sre.SRE_Match' objects}
21551721 12.069 0.000 12.069 0.000 {id}
2696614 11.840 0.000 23.704 0.000 /home2/rackdev/tmloom/lib/ch_elementtree.py:1109(start)
109235 10.910 0.000 10.910 0.000 {open}
17334 10.270 0.001 160.093 0.009 {built-in method Parse}
1296896/1287653 9.149 0.000 83.216 0.000 /usr/lib/python2.7/copy.py:253(_deepcopy_dict)
4230978 9.093 0.000 40.184 0.000 /home2/rackdev/tmloom/lib/ch_elementtree.py:123(interpretEntityReferences)
2546 8.518 0.003 8.518 0.003 {method 'parse' of 'pyRXPU.Parser' objects}
8666 8.479 0.001 19627.729 2.265 /home2/rackdev/tmloom/lib/pretty.py:1051(_htmlMill)
513018/21704 8.230 0.000 34.502 0.002 /usr/lib/python2.7/sre_compile.py:32(_compile)
7674118 8.067 0.000 8.067 0.000 {method 'has_key' of 'dict' objects}
1249988/2518 7.990 0.000 78.836 0.031 /home2/rackdev/ch_tools/ch_pyRXPU.py:971(_enhanceTree)
6216328 7.936 0.000 21.218 0.000 /home2/rackdev/tmloom/lib/ch_elementtree.py:1183(_fixtext)
6654018 7.909 0.000 27.747 0.000 /usr/lib/python2.7/sre_parse.py:201(get)
887092 7.855 0.000 7.855 0.000 {_codecs.utf_8_decode}
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489292 7.693 0.000 12.335 0.000 /usr/lib/python2.7/sre_compile.py:207(_optimize_charset)
9624206 7.440 0.000 8.827 0.000 /home2/rackdev/tmloom/lib/ch_elementtree.py:1190(_fixname)
177847 7.381 0.000 49.018 0.000 /home2/rackdev/ch_tools/ch_urinorm2.py:475(unormUri)
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452143 6.748 0.000 6.748 0.000 {method 'extend' of 'list' objects}
10676473 6.699 0.000 6.699 0.000 {method 'upper' of 'unicode' objects}
220016/42 6.523 0.000 43.785 1.042 /home2/rackdev/ch_tools/ch_show.py:269(_showdict)
1707971 6.511 0.000 12.148 0.000 /home2/rackdev/ch_tools/ch_pyRXPU.py:55(attrNameCmp)
11260806 6.358 0.000 6.358 0.000 {ord}
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4902169 5.634 0.000 5.634 0.000 {method 'keys' of 'dict' objects}
8660101 5.606 0.000 5.606 0.000 {method 'rfind' of 'str' objects}
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2696614 5.431 0.000 11.612 0.000 /home2/rackdev/tmloom/lib/ch_elementtree.py:1125(end)
687866 5.396 0.000 939.353 0.001 /home2/rackdev/tmloom/lib/utils.py:489(_make_regex)
2696614 5.366 0.000 18.687 0.000 /home2/rackdev/tmloom/lib/ch_elementtree.py:1235(_end)
8877868 5.361 0.000 5.361 0.000 {chr}
177847 5.206 0.000 15.030 0.000 /home2/rackdev/ch_tools/ch_urinorm2.py:347(__init__)
5393228 4.989 0.000 7.906 0.000 /home2/rackdev/tmloom/lib/ch_elementtree.py:1080(_flush)
1875599 4.724 0.000 11.138 0.000 /home2/rackdev/ch_tools/ch_show.py:99(showWrite)
1232667/42 4.691 0.000 43.789 1.043 /home2/rackdev/ch_tools/ch_show.py:132(dispatch)
401318/367042 4.672 0.000 25.107 0.000 /home2/rackdev/ch_tools/ch_show.py:344(_showlist)
4225338 4.476 0.000 18.805 0.000 {method 'sort' of 'list' objects}
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3276155 4.060 0.000 6.134 0.000 /usr/lib/python2.7/sre_parse.py:130(__getitem__)
852428 3.843 0.000 37.329 0.000 /home2/rackdev/ch_tools/ch_urinorm2.py:1169(byteifyUnicodeString)
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483998 2.957 0.000 3.780 0.000 /home2/rackdev/tmloom/lib/utils.py:4836(_interpretBackslashes)
3293058 2.814 0.000 5.773 0.000 /usr/lib/python2.7/sre_parse.py:195(match)
489292 2.808 0.000 16.877 0.000 /usr/lib/python2.7/sre_compile.py:178(_compile_charset)
416006 2.726 0.000 2.726 0.000 {_codecs.utf_8_encode}
2111475 2.714 0.000 17.942 0.000 /home2/rackdev/ch_tools/ch_pyRXPU.py:1156(xmlifyAttributeValue)
2169283 2.535 0.000 3.771 0.000 /usr/lib/python2.7/sre_parse.py:138(append)
185333 2.478 0.000 38.216 0.000 /home2/rackdev/ch_tools/ch_urinorm2.py:980(normPath)
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1618258 2.061 0.000 14.303 0.000 /build/buildd/python2.7-2.7.6/Modules/pyexpat.c:441(CharacterData)
1296897 2.055 0.000 2.055 0.000 {method 'iteritems' of 'dict' objects}
2978496 1.997 0.000 1.997 0.000 {repr}
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1597734 1.990 0.000 3.158 0.000 /home2/rackdev/tmloom/lib/ch_elementtree.py:1098(data)
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-------------- next part --------------
elapsed time for this tmloom2 111 run: 9:33:14.644190
Wed Aug 31 00:25:59 2016 /tmp/profile
2284685107 function calls (2253726730 primitive calls) in 34378.715 seconds
Ordered by: internal time
List reduced from 1827 to 1000 due to restriction <1000>
ncalls tottime percall cumtime percall filename:lineno(function)
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9 1.115 0.124 31.096 3.455 {cPickle.load}
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3279086 0.986 0.000 1.517 0.000 /usr/lib/python2.7/sre_parse.py:141(__getitem__)
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1597861 0.943 0.000 3.394 0.000 /home2/rack/tmloom/lib/ch_elementtree.py:1232(_data)
2707036 0.935 0.000 39.566 0.000 /build/python2.7-M_HuAO/python2.7-2.7.12/Modules/pyexpat.c:566(StartElement)
3296398 0.916 0.000 1.643 0.000 /usr/lib/python2.7/sre_parse.py:206(match)
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1 0.000 0.000 0.000 0.000 /usr/lib/python2.7/urllib.py:1183(splittag)
36 0.000 0.000 0.000 0.000 {method 'read' of 'cStringIO.StringI' objects}
2 0.000 0.000 0.000 0.000 /usr/lib/python2.7/urllib.py:1017(__init__)
75 0.000 0.000 0.000 0.000 {imp.acquire_lock}
2 0.000 0.000 0.000 0.000 /usr/lib/python2.7/urllib.py:958(__init__)
7 0.000 0.000 0.000 0.000 {method 'read' of 'cStringIO.StringO' objects}
1 0.000 0.000 0.000 0.000 /usr/lib/python2.7/ssl.py:514(SSLSocket)
1 0.000 0.000 0.000 0.000 /usr/lib/python2.7/httplib.py:532(_check_close)
1 0.000 0.000 0.000 0.000 /usr/lib/python2.7/subprocess.py:648(Popen)
1 0.000 0.000 0.000 0.000 /home2/rack/ch_tools/ch_urinorm2.py:340(Urinorm)
2 0.000 0.000 0.000 0.000 /usr/lib/python2.7/glob.py:29(iglob)
3 0.000 0.000 0.000 0.000 /usr/lib/python2.7/threading.py:1015(daemon)
7 0.000 0.000 0.000 0.000 {sys._getframe}
2 0.000 0.000 0.000 0.000 /usr/lib/python2.7/hmac.py:109(digest)
7 0.000 0.000 0.000 0.000 {time.time}
1 0.000 0.000 0.000 0.000 /usr/lib/python2.7/glob.py:71(glob1)
6 0.000 0.000 0.000 0.000 /usr/lib/python2.7/dist-packages/pkg_resources/_vendor/pyparsing.py:2873(__str__)
1 0.000 0.000 0.000 0.000 /usr/lib/python2.7/keyword.py:13(<module>)
1 0.000 0.000 0.000 0.000 /usr/lib/python2.7/dist-packages/pkg_resources/_vendor/packaging/__about__.py:4(<module>)
1 0.000 0.000 0.000 0.000 <string>:1(manifest_mod)
1 0.000 0.000 0.000 0.000 /usr/lib/python2.7/dist-packages/pkg_resources/_vendor/pyparsing.py:271(ParseResults)
1 0.000 0.000 0.006 0.006 /usr/lib/python2.7/dist-packages/pkg_resources/__init__.py:1533(_get)
1 0.000 0.000 0.000 0.000 /usr/lib/python2.7/mimetools.py:50(parseplist)
1 0.000 0.000 0.069 0.069 /usr/lib/python2.7/httplib.py:855(send)
5 0.000 0.000 0.000 0.000 {_struct.calcsize}
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