[Numpy-discussion] structured arrays, recarrays, and record arrays
Allan Haldane
allanhaldane at gmail.com
Sun Jan 18 23:36:50 EST 2015
Hello all,
Documentation of recarrays is poor and I'd like to improve it. In order
to do this I've been looking at core/records.py, and I would appreciate
some feedback on my plan.
Let me start by describing what I see. In the docs there is some
confusion about 'structured arrays' vs 'record arrays' vs 'recarrays' -
the docs use them often interchangeably. They also refer to structured
dtypes alternately as 'struct data types', 'record data types' or simply
'records' (eg, see the reference/arrays.dtypes and
reference/arrays.indexing doc pages).
But by my reading of the code there are really three (or four) distinct
types of arrays with structure. Here's a possible nomenclature:
* "Structured arrays" are simply ndarrays with structured dtypes. That
is, the data type is subdivided into fields of different type.
* "recarrays" are a subclass of ndarrays that allow access to the
fields by attribute.
* "Record arrays" are recarrays where the elements have additionally
been converted to 'numpy.core.records.record' type such that each
data element is an object with field attributes.
* (it is also possible to create arrays with dtype.dtype of
numpy.core.records.record, but which are not recarrays. However I
have never seen this done.)
Here's code demonstrating the creation of the different types of array
(in order: structured array, recarray, ???, record array).
>>> arr = np.array([(1,'a'), (2,'b')],
dtype=[('foo', int), ('bar', 'S1')])
>>> recarr = arr.view(type=np.recarray)
>>> noname = arr.view(dtype=dtype(np.record, arr.dtype))
>>> recordarr = arr.view(dtype=dtype((np.record, arr.dtype)),
type=np.recarray)
>>> type(arr), arr.dtype.type
(numpy.ndarray, numpy.void)
>>> type(recarr), recarr.dtype.type
(numpy.core.records.recarray, numpy.void)
>>> type(recordarr), recordarr.dtype.type
(numpy.core.records.recarray, numpy.core.records.record)
Note that the functions numpy.rec.array, numpy.rec.fromrecords,
numpy.rec.fromarrays, and np.recarray.__new__ create record arrays.
However, in the docs you can see examples of the creation of recarrays,
eg in the recarray and ndarray.view doctrings and in
http://www.scipy.org/Cookbook/Recarray. The files
numpy/lib/recfunctions.py and numpy/lib/npyio.py (and possibly masked
arrays, but I haven't looked yet) make extensive use of recarrays (but
not record arrays).
The main functional difference between recarrays and record arrays is
field access on individual elements:
>>> recordarr[0].foo
1
>>> recarr[0].foo
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
AttributeError: 'numpy.void' object has no attribute 'foo'
Also, note that recarrays have a small performance penalty relative to
structured arrays, and record arrays have another one relative to
recarrays because of the additional python logic.
So my first goal in updating the docs is to use the right terms in the
right place. In almost all cases, references to 'records' (eg 'record
types') should be replaced with 'structured' (eg 'structured types'),
with the exception of docs that deal specifically with record arrays.
It's my guess that in the distant past structured datatypes were
intended to always be of type numpy.core.records.record (thus the
description in reference/arrays.dtypes) but that
numpy.core.records.record became generally obsolete without updates to
the docs. doc/records.rst.txt seems to document the transition.
I've made a preliminary pass of the docs, which you can see here
https://github.com/ahaldane/numpy/commit/d87633b228dabee2ddfe75d1ee9e41ba7039e715
Mostly I renamed 'record type' to 'structured type', and added a very
rough draft to numpy/doc/structured_arrays.py.
I would love to hear from those more knowledgeable than myself on
whether this works!
Cheers,
Allan
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