[Numpy-discussion] Getting C-function pointers from Python to C
Travis Oliphant
travis at continuum.io
Thu Apr 12 17:55:52 EDT 2012
On Apr 12, 2012, at 4:51 PM, Dag Sverre Seljebotn wrote:
> On 04/12/2012 11:13 PM, Travis Oliphant wrote:
>> Dag,
>>
>> Thanks for the link to your CEP. This is the first time I've seen it. You probably referenced it before, but I hadn't seen it.
>>
>> That CEP seems along the lines of what I was thinking of. We can make scipy follow that CEP and NumPy as well in places that it needs function pointers.
>>
>> I can certainly get behind it with Numba and recommend it to SciPy (and write the scipy.integrate.quad function to support it).
>>
>> Thanks for the CEP.
>
> Great. I'll pass this message on to the Cython list and see if anybody
> wants to provide input (but given the scope, it should be minor tweaks
> and easy to accommodate in whatever code you write).
>
> You will fill in more of the holes as you implement this in Numba and
> SciPy of course (my feeling is they will support it before Cython; let's
> say I hope this happens within the next year).
Very nice. This will help immensely I think. It's actually just what I was looking for. Just to be clear, by " pad to sizeof(void*) alignment", you mean that after the first 2 bytes there are (sizeof(void*) - 2) bytes before the first function pointer in the memory block pointed to by the PyCObject / Capsule?
Thanks,
-Travis
>
> Dag
>
>
>
>
>>
>> -Travis
>>
>>
>>
>>
>>
>> On Apr 12, 2012, at 2:08 PM, Dag Sverre Seljebotn wrote:
>>
>>> On 04/12/2012 07:24 PM, Nathaniel Smith wrote:
>>>> On Wed, Apr 11, 2012 at 10:23 PM, Travis Oliphant<teoliphant at gmail.com> wrote:
>>>>>>> In the mean-time, I think we could do as Robert essentially suggested and just use Capsule Objects around an agreed-upon simple C-structure:
>>>>>>>
>>>>>>> int id /* Some number that can be used as a "type-check" */
>>>>>>> void *func;
>>>>>>> char *string;
>>>>>>>
>>>>>>> We can then just create some nice functions to go to and from this form in NumPy ctypeslib and then use this while the Python PEP gets written and adopted.
>>>>>>
>>>>>> What is not clear to me is how one get from the Python callable to the
>>>>>> capsule.
>>>>>
>>>>> This varies substantially based on the tool. Numba would do it's work and create the capsule object using it's approach. Cython would use a different approach.
>>>>>
>>>>> I would also propose to have in NumPy some basic functions that go back-and forth between this representation, ctypes, and any other useful representations that might emerge.
>>>>>
>>>>>>
>>>>>> Or do you simply intend to pass a non-callable capsule as an argument in
>>>>>> place of the callback?
>>>>>
>>>>> I had simply intended to allow a non-callable capsule argument to be passed in instead of another call-back to any SciPy or NumPy function that can take a raw C-function pointer.
>>>>
>>>> If the cython folks are worried about type-checking overhead, then
>>>> PyCapsule seems sub-optimal, because it's unnecessarily complicated to
>>>> determine what sort of PyCapsule you have, and then extract the actual
>>>> C struct. (At a minimum, it requires two calls to non-inlineable
>>>> functions, plus an unnecessary pointer indirection.)
>>>
>>> I think this discussion is moot -- the way I reverse-engineer Travis is
>>> that there's no time for a cross-project discussion about this now.
>>> That's not too bad, Cython will go its own way (eventually), and perhaps
>>> we can merge in the future...
>>>
>>> But for the entertainment value:
>>>
>>> In my CEP [1] I descripe two access mechanisms, one slow (for which I
>>> think capsules is fine), and a faster one.
>>>
>>> Obviously, only the slow mechanism will be implemented first.
>>>
>>> So the only things I'd like changed in how Travis' want to do this is
>>>
>>> a) Storing the signature string data in the struct, rather than as a char*;
>>>
>>> void *func
>>> char string[1]; // variable-size-allocated and null-terminated
>>>
>>> b) Allow for multiple signatures in the same capsule, i.e. "dd->d",
>>> "ff->f", in the same capsule.
>>>
>>>> A tiny little custom class in a tiny little library that everyone can
>>>> share might be better? (Bonus: a custom class could define a __call__
>>>> method that used ctypes to call the function directly, for interactive
>>>> convenience/testing/etc.)
>>>
>>> Having NumPy and Cython depend on a common library, and getting that to
>>> work for users, seems rather utopic to me. And if I propose that Cython
>>> have a hard dependency of NumPy for a feature as basic as calli.ng a
>>> callback object then certain people will be very angry.
>>>
>>> Anyway, in my CEP I went to great pains to avoid having to do this, with
>>> a global registration mechanism for multiple such types.
>>>
>>> Regarding your idea for the __call__, that's the exact opposite of what
>>> I'm doing in the CEP. I'm pretty sure that what I described is what we
>>> want for Cython; we will never tell our users to pass capsules around.
>>> What I want is this:
>>>
>>> @numba
>>> def f(x): return 2 * x
>>>
>>> @cython.inline
>>> def g(x): return 3 * x
>>>
>>> print f(3)
>>> print g(3)
>>> print scipy.integrate.quad(f, 0.2, 3) # fast!
>>> print scipy.integrate.quad(g, 0.2, 3) # fast!
>>>
>>> # If you really want a capsule:
>>> print f.__nativecall__
>>>
>>> Dag
>>>
>>> [1] http://wiki.cython.org/enhancements/cep1000
>>> _______________________________________________
>>> NumPy-Discussion mailing list
>>> NumPy-Discussion at scipy.org
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>>
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