[Numpy-discussion] problem installing numpy on Fedora

Wed Apr 13 15:39:21 EDT 2011

I have Fedora Core 3 and x86_64 architecture. But I don't understand why it
appears to look for /usr/lib/gcc/x86_64-redhat-linux/3.4.4/

instead of /usr/bin/gcc

Csaba

On Wed, Apr 13, 2011 at 10:17 AM, Charles R Harris <
charlesr.harris at gmail.com> wrote:

>
>
> On Wed, Apr 13, 2011 at 7:30 AM, c cook <csecook at gmail.com> wrote:
>
>> Hello,
>>
>> I am trying to install numpy 1.6.0b2 version on Fedora and I am getting
>> the following error:
>>
>> In file included from numpy/core/src/private/npy_config.h:4,
>>                  from numpy/core/src/multiarray/common.c:8,
>>                  from
>> numpy/core/src/multiarray/multiarraymodule_onefile.c:8:
>> build/src.linux-x86_64-2.4/numpy/core/include/numpy/config.h:34:1:
>> warning: "HAVE_HYPOT" redefined
>> In file included from /home/cse/Apps/Python-2.4/Include/Python.h:8,
>>                  from numpy/core/src/multiarray/common.c:2,
>>                  from
>> numpy/core/src/multiarray/multiarraymodule_onefile.c:8:
>> /home/cse/Apps/Python-2.4/pyconfig.h:232:1: warning: this is the location
>> of the previous definition
>> In file included from
>> numpy/core/src/multiarray/multiarraymodule_onefile.c:14:
>> numpy/core/src/multiarray/arraytypes.c.src: In function `VOID_getitem':
>> numpy/core/src/multiarray/arraytypes.c.src:615: warning: label `finish'
>> defined but not used
>> In file included from
>> numpy/core/src/multiarray/multiarraymodule_onefile.c:19:
>> numpy/core/src/multiarray/descriptor.c: In function `descr_repeat':
>> numpy/core/src/multiarray/descriptor.c:2840: warning: long int format,
>> different type arg (arg 3)
>> In file included from
>> numpy/core/src/multiarray/multiarraymodule_onefile.c:27:
>> numpy/core/src/multiarray/methods.c: In function `NpyArg_ParseKeywords':
>> numpy/core/src/multiarray/methods.c:41: warning: passing arg 3 of
>> `PyArg_VaParseTupleAndKeywords' discards qualifiers from pointer target type
>> In file included from
>> numpy/core/src/multiarray/multiarraymodule_onefile.c:28:
>> numpy/core/src/multiarray/convert_datatype.c: In function
>> `min_scalar_type_num':
>> numpy/core/src/multiarray/convert_datatype.c:774: warning: comparison is
>> always true due to limited range of data type
>> numpy/core/src/multiarray/descriptor.c: In function
>> `_convert_divisor_to_multiple':
>> numpy/core/src/multiarray/descriptor.c:606: warning: 'q' might be used
>> uninitialized in this function
>> numpy/core/src/multiarray/einsum.c.src: In function
>> `float_sum_of_products_contig_outstride0_one':
>> numpy/core/src/multiarray/einsum.c.src:852: error: unrecognizable insn:
>> (insn:HI 440 228 481 14
>> /usr/lib/gcc/x86_64-redhat-linux/3.4.4/include/xmmintrin.h:915 (set (reg:SF
>> 148)
>>         (vec_select:SF (reg/v:V4SF 67 [ accum_sse ])
>>             (parallel [
>>                     (const_int 0 [0x0])
>>                 ]))) -1 (insn_list 213 (nil))
>>     (nil))
>> numpy/core/src/multiarray/einsum.c.src:852: internal compiler error: in
>> extract_insn, at recog.c:2083
>> Please submit a full bug report,
>> with preprocessed source if appropriate.
>> See <URL:http://bugzilla.redhat.com/bugzilla> for instructions.
>> Preprocessed source stored into /tmp/cck42rVN.out file, please attach this
>> to your bugreport.
>> In file included from numpy/core/src/private/npy_config.h:4,
>>                  from numpy/core/src/multiarray/common.c:8,
>>                  from
>> numpy/core/src/multiarray/multiarraymodule_onefile.c:8:
>> build/src.linux-x86_64-2.4/numpy/core/include/numpy/config.h:34:1:
>> warning: "HAVE_HYPOT" redefined
>> In file included from /home/cse/Apps/Python-2.4/Include/Python.h:8,
>>                  from numpy/core/src/multiarray/common.c:2,
>>                  from
>> numpy/core/src/multiarray/multiarraymodule_onefile.c:8:
>> /home/cse/Apps/Python-2.4/pyconfig.h:232:1: warning: this is the location
>> of the previous definition
>> In file included from
>> numpy/core/src/multiarray/multiarraymodule_onefile.c:14:
>> numpy/core/src/multiarray/arraytypes.c.src: In function `VOID_getitem':
>> numpy/core/src/multiarray/arraytypes.c.src:615: warning: label `finish'
>> defined but not used
>> In file included from
>> numpy/core/src/multiarray/multiarraymodule_onefile.c:19:
>> numpy/core/src/multiarray/descriptor.c: In function `descr_repeat':
>> numpy/core/src/multiarray/descriptor.c:2840: warning: long int format,
>> different type arg (arg 3)
>> In file included from
>> numpy/core/src/multiarray/multiarraymodule_onefile.c:27:
>> numpy/core/src/multiarray/methods.c: In function `NpyArg_ParseKeywords':
>> numpy/core/src/multiarray/methods.c:41: warning: passing arg 3 of
>> `PyArg_VaParseTupleAndKeywords' discards qualifiers from pointer target type
>> In file included from
>> numpy/core/src/multiarray/multiarraymodule_onefile.c:28:
>> numpy/core/src/multiarray/convert_datatype.c: In function
>> `min_scalar_type_num':
>> numpy/core/src/multiarray/convert_datatype.c:774: warning: comparison is
>> always true due to limited range of data type
>> numpy/core/src/multiarray/descriptor.c: In function
>> `_convert_divisor_to_multiple':
>> numpy/core/src/multiarray/descriptor.c:606: warning: 'q' might be used
>> uninitialized in this function
>> numpy/core/src/multiarray/einsum.c.src: In function
>> `float_sum_of_products_contig_outstride0_one':
>> numpy/core/src/multiarray/einsum.c.src:852: error: unrecognizable insn:
>> (insn:HI 440 228 481 14
>> /usr/lib/gcc/x86_64-redhat-linux/3.4.4/include/xmmintrin.h:915 (set (reg:SF
>> 148)
>>         (vec_select:SF (reg/v:V4SF 67 [ accum_sse ])
>>             (parallel [
>>                     (const_int 0 [0x0])
>>                 ]))) -1 (insn_list 213 (nil))
>>     (nil))
>> numpy/core/src/multiarray/einsum.c.src:852: internal compiler error: in
>> extract_insn, at recog.c:2083
>> Please submit a full bug report,
>> with preprocessed source if appropriate.
>> See <URL:http://bugzilla.redhat.com/bugzilla> for instructions.
>> Preprocessed source stored into /tmp/cck42rVN.out file, please attach this
>> to your bugreport.
>> error: Command "gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall
>> -Wstrict-prototypes -fPIC -Inumpy/core/include
>> -Ibuild/src.linux-x86_64-2.4/numpy/core/include/numpy
>> -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core
>> -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath
>> -Inumpy/core/include -I/home/cse/Apps/Python-2.4/Include
>> -I/home/cse/Apps/Python-2.4
>> -Ibuild/src.linux-x86_64-2.4/numpy/core/src/multiarray
>> -Ibuild/src.linux-x86_64-2.4/numpy/core/src/umath -c
>> numpy/core/src/multiarray/multiarraymodule_onefile.c -o
>> build/temp.linux-x86_64-2.4/multiarraymodule_onefile.o" failed with exit
>> status 1
>>
>>
>> Any idea what is the problem?
>>
>>
> I'll guess the combination of gcc-3.4.4, which is six years old, and the
> sse instructions. It might be worth trying gcc-3.4.6 if you can't upgrade
> the compiler outright.  Out of curiousity, what architecture and fedora
> version are you using?
>
> Chuck
>
>
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