[Numpy-discussion] Atlas build issues
Gael Varoquaux
gael.varoquaux at normalesup.org
Wed Oct 20 03:38:25 EDT 2010
On Wed, Oct 20, 2010 at 10:32:48AM +0300, Pearu Peterson wrote:
> I could not read the stdout
Because I forgot to attach it! I added it
>but perhaps you didn't build atlas with complete lapack.
That's quite possible. The size of liblapack.a seems a bit too small
(1.1M). On the system for which it works, I have 8M.
> The basic steps for that are described in
> http://math-atlas.sourceforge.net/errata.html#completelp
Hum, this page is mentionning a '--with-netlib-lapack' swith the the
configre that is not in the INSTALL.txt of my atlas version. I was using
the '-Ss flapack' switch. I'll investigate that.
Thanks a lot for the pointer,
Gaël
-------------- next part --------------
F2PY Version 2_8716
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib64
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /opt/lib
libraries mkl,vml,guide not found in /usr/lib64
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
customize GnuFCompiler
Could not locate executable g77
Could not locate executable f77
customize IntelFCompiler
Could not locate executable ifort
Could not locate executable ifc
customize LaheyFCompiler
Could not locate executable lf95
customize PGroupFCompiler
Could not locate executable pgf90
Could not locate executable pgf77
customize AbsoftFCompiler
Could not locate executable f90
customize NAGFCompiler
Found executable /usr/bin/f95
customize VastFCompiler
customize CompaqFCompiler
Could not locate executable fort
customize IntelItaniumFCompiler
Could not locate executable efort
Could not locate executable efc
customize IntelEM64TFCompiler
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
compile options: '-c'
gcc: _configtest.c
gcc -pthread _configtest.o -L/volatile/varoquau/usr/lib/ -lptf77blas -lptcblas -latlas -o _configtest
ATLAS version 3.9.25 built by varoquau on Tue Oct 19 18:39:00 CEST 2010:
UNAME : Linux is143560 2.6.22.19-server-2mdv #1 SMP Mon May 5 21:53:42 EDT 2008 x86_64 Intel(R) Xeon(R) CPU E5440 @ 2.83GHz GNU/Linux
INSTFLG : -1 0 -a 1 -l 1
ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_Core2 -DATL_CPUMHZ=2826 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664
F2CDEFS : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
CACHEEDGE: 1572864
F77 : gfortran, version GNU Fortran (GCC) 4.2.2 20071128 (prerelease) (4.2.2-3.1mdv2008.0)
F77FLAGS : -O -fPIC -m64
SMC : gcc, version gcc (GCC) 4.2.2 20071128 (prerelease) (4.2.2-3.1mdv2008.0)
SMCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC -m64
SKC : gcc, version gcc (GCC) 4.2.2 20071128 (prerelease) (4.2.2-3.1mdv2008.0)
SKCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC -m64
success!
removing: _configtest.c _configtest.o _configtest
Setting PTATLAS=ATLAS
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/volatile/varoquau/usr/lib/']
language = c
define_macros = [('ATLAS_INFO', '"\\"3.9.25\\""')]
include_dirs = ['/volatile/varoquau/usr/src/ATLAS/include']
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/volatile/varoquau/usr/lib/']
language = c
define_macros = [('ATLAS_INFO', '"\\"3.9.25\\""')]
include_dirs = ['/volatile/varoquau/usr/src/ATLAS/include']
lapack_opt_info:
lapack_mkl_info:
mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib64
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /opt/lib
libraries mkl,vml,guide not found in /usr/lib64
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries lapack_atlas not found in /volatile/varoquau/usr/lib/
numpy.distutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/volatile/varoquau/usr/lib/']
language = c
define_macros = [('ATLAS_INFO', '"\\"3.9.25\\""')]
include_dirs = ['/volatile/varoquau/usr/src/ATLAS/include']
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/volatile/varoquau/usr/lib/']
language = c
define_macros = [('ATLAS_INFO', '"\\"3.9.25\\""')]
include_dirs = ['/volatile/varoquau/usr/src/ATLAS/include']
running build_ext
running build_src
build_src
building py_modules sources
building library "npymath" sources
creating build
creating build/src.linux-x86_64-2.5
customize GnuFCompiler
customize IntelFCompiler
customize LaheyFCompiler
customize PGroupFCompiler
customize AbsoftFCompiler
customize NAGFCompiler
customize VastFCompiler
customize CompaqFCompiler
customize IntelItaniumFCompiler
customize IntelEM64TFCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using config
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -c'
gcc: _configtest.c
gcc -pthread _configtest.o -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -c'
gcc: _configtest.c
_configtest.c:1: warning: conflicting types for built-in function ?exp?
gcc -pthread _configtest.o -o _configtest
_configtest.o: In function `main':
/volatile/varoquau/dev/numpy/_configtest.c:6: undefined reference to `exp'
collect2: ld returned 1 exit status
_configtest.o: In function `main':
/volatile/varoquau/dev/numpy/_configtest.c:6: undefined reference to `exp'
collect2: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -c'
gcc: _configtest.c
_configtest.c:1: warning: conflicting types for built-in function ?exp?
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building extension "numpy.core._sort" sources
adding 'numpy/core/include/numpy/config.h' to sources.
adding 'numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
adding 'numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['numpy/core/include/numpy/config.h', 'numpy/core/include/numpy/_numpyconfig.h', 'numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.multiarray" sources
adding 'numpy/core/include/numpy/config.h' to sources.
adding 'numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
adding 'numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['numpy/core/include/numpy/config.h', 'numpy/core/include/numpy/_numpyconfig.h', 'numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.umath" sources
adding 'numpy/core/include/numpy/config.h' to sources.
adding 'numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
adding 'numpy/core/include/numpy/__ufunc_api.h' to sources.
adding 'numpy/core/src/umath' to include_dirs.
numpy.core - nothing done with h_files = ['numpy/core/src/umath/funcs.inc', 'numpy/core/include/numpy/config.h', 'numpy/core/include/numpy/_numpyconfig.h', 'numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core.scalarmath" sources
adding 'numpy/core/include/numpy/config.h' to sources.
adding 'numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
adding 'numpy/core/include/numpy/__multiarray_api.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
adding 'numpy/core/include/numpy/__ufunc_api.h' to sources.
numpy.core - nothing done with h_files = ['numpy/core/include/numpy/config.h', 'numpy/core/include/numpy/_numpyconfig.h', 'numpy/core/include/numpy/__multiarray_api.h', 'numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core._dotblas" sources
adding 'numpy/core/blasdot/_dotblas.c' to sources.
building extension "numpy.core.umath_tests" sources
building extension "numpy.core.multiarray_tests" sources
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
adding 'numpy/linalg/lapack_litemodule.c' to sources.
adding 'numpy/linalg/python_xerbla.c' to sources.
building extension "numpy.random.mtrand" sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -c'
gcc: _configtest.c
gcc -pthread _configtest.o -o _configtest
_configtest
failure.
removing: _configtest.c _configtest.o _configtest
building data_files sources
build_src: building npy-pkg config files
customize UnixCCompiler
customize UnixCCompiler using build_clib
building 'npymath' library
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
creating build/temp.linux-x86_64-2.5
creating build/temp.linux-x86_64-2.5/numpy
creating build/temp.linux-x86_64-2.5/numpy/core
creating build/temp.linux-x86_64-2.5/numpy/core/src
creating build/temp.linux-x86_64-2.5/numpy/core/src/npymath
compile options: '-Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/core/src/npymath/ieee754.c
gcc: numpy/core/src/npymath/npy_math_complex.c
gcc: numpy/core/src/npymath/npy_math.c
ar: adding 3 object files to build/temp.linux-x86_64-2.5/libnpymath.a
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'numpy.core._sort' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
compile options: '-Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/core/src/_sortmodule.c
gcc -pthread -shared build/temp.linux-x86_64-2.5/numpy/core/src/_sortmodule.o -L/usr/lib64 -Lbuild/temp.linux-x86_64-2.5 -lm -lpython2.5 -o numpy/core/_sort.so
building 'numpy.core.multiarray' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
creating build/temp.linux-x86_64-2.5/numpy/core/src/multiarray
compile options: '-Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/core/src/multiarray/multiarraymodule_onefile.c
gcc -pthread -shared build/temp.linux-x86_64-2.5/numpy/core/src/multiarray/multiarraymodule_onefile.o -L/usr/lib64 -Lbuild/temp.linux-x86_64-2.5 -lnpymath -lm -lpython2.5 -o numpy/core/multiarray.so
building 'numpy.core.umath' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
creating build/temp.linux-x86_64-2.5/numpy/core/src/umath
compile options: '-Inumpy/core/src/umath -Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/core/src/umath/umathmodule_onefile.c
gcc -pthread -shared build/temp.linux-x86_64-2.5/numpy/core/src/umath/umathmodule_onefile.o -L/usr/lib64 -Lbuild/temp.linux-x86_64-2.5 -lnpymath -lm -lpython2.5 -o numpy/core/umath.so
building 'numpy.core.scalarmath' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
compile options: '-Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/core/src/scalarmathmodule.c
gcc -pthread -shared build/temp.linux-x86_64-2.5/numpy/core/src/scalarmathmodule.o -L/usr/lib64 -Lbuild/temp.linux-x86_64-2.5 -lm -lpython2.5 -o numpy/core/scalarmath.so
building 'numpy.core._dotblas' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
creating build/temp.linux-x86_64-2.5/numpy/core/blasdot
compile options: '-DATLAS_INFO="\"3.9.25\"" -Inumpy/core/blasdot -I/volatile/varoquau/usr/src/ATLAS/include -Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/core/blasdot/_dotblas.c
gcc -pthread -shared build/temp.linux-x86_64-2.5/numpy/core/blasdot/_dotblas.o -L/volatile/varoquau/usr/lib/ -L/usr/lib64 -Lbuild/temp.linux-x86_64-2.5 -lptf77blas -lptcblas -latlas -lpython2.5 -o numpy/core/_dotblas.so
building 'numpy.core.umath_tests' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
compile options: '-Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/core/src/umath/umath_tests.c
gcc -pthread -shared build/temp.linux-x86_64-2.5/numpy/core/src/umath/umath_tests.o -L/usr/lib64 -Lbuild/temp.linux-x86_64-2.5 -lpython2.5 -o numpy/core/umath_tests.so
building 'numpy.core.multiarray_tests' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
compile options: '-Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/core/src/multiarray/multiarray_tests.c
gcc -pthread -shared build/temp.linux-x86_64-2.5/numpy/core/src/multiarray/multiarray_tests.o -L/usr/lib64 -Lbuild/temp.linux-x86_64-2.5 -lpython2.5 -o numpy/core/multiarray_tests.so
building 'numpy.lib._compiled_base' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
creating build/temp.linux-x86_64-2.5/numpy/lib
creating build/temp.linux-x86_64-2.5/numpy/lib/src
compile options: '-Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/lib/src/_compiled_base.c
gcc -pthread -shared build/temp.linux-x86_64-2.5/numpy/lib/src/_compiled_base.o -L/usr/lib64 -Lbuild/temp.linux-x86_64-2.5 -lpython2.5 -o numpy/lib/_compiled_base.so
building 'numpy.numarray._capi' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
creating build/temp.linux-x86_64-2.5/numpy/numarray
compile options: '-Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/numarray/_capi.c
gcc -pthread -shared build/temp.linux-x86_64-2.5/numpy/numarray/_capi.o -L/usr/lib64 -Lbuild/temp.linux-x86_64-2.5 -lpython2.5 -o numpy/numarray/_capi.so
building 'numpy.fft.fftpack_lite' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
creating build/temp.linux-x86_64-2.5/numpy/fft
compile options: '-Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/fft/fftpack_litemodule.c
gcc: numpy/fft/fftpack.c
gcc -pthread -shared build/temp.linux-x86_64-2.5/numpy/fft/fftpack_litemodule.o build/temp.linux-x86_64-2.5/numpy/fft/fftpack.o -L/usr/lib64 -Lbuild/temp.linux-x86_64-2.5 -lpython2.5 -o numpy/fft/fftpack_lite.so
building 'numpy.linalg.lapack_lite' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
creating build/temp.linux-x86_64-2.5/numpy/linalg
compile options: '-DATLAS_INFO="\"3.9.25\"" -I/volatile/varoquau/usr/src/ATLAS/include -Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/linalg/python_xerbla.c
gcc: numpy/linalg/lapack_litemodule.c
gcc -pthread -shared build/temp.linux-x86_64-2.5/numpy/linalg/lapack_litemodule.o build/temp.linux-x86_64-2.5/numpy/linalg/python_xerbla.o -L/volatile/varoquau/usr/lib/ -L/usr/lib64 -Lbuild/temp.linux-x86_64-2.5 -llapack -lptf77blas -lptcblas -latlas -lpython2.5 -o numpy/linalg/lapack_lite.so
building 'numpy.random.mtrand' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fexceptions -g -fPIC
creating build/temp.linux-x86_64-2.5/numpy/random
creating build/temp.linux-x86_64-2.5/numpy/random/mtrand
compile options: '-Inumpy/core/include -Inumpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -Inumpy/core/src/multiarray -Inumpy/core/src/umath -c'
gcc: numpy/random/mtrand/mtrand.c
gcc: numpy/random/mtrand/distributions.c
gcc: numpy/random/mtrand/randomkit.c
gcc: numpy/random/mtrand/initarray.c
gcc -pthread -shared build/temp.linux-x86_64-2.5/numpy/random/mtrand/mtrand.o build/temp.linux-x86_64-2.5/numpy/random/mtrand/randomkit.o build/temp.linux-x86_64-2.5/numpy/random/mtrand/initarray.o build/temp.linux-x86_64-2.5/numpy/random/mtrand/distributions.o -L/usr/lib64 -Lbuild/temp.linux-x86_64-2.5 -lpython2.5 -o numpy/random/mtrand.so
running scons
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