[Numpy-discussion] question about creating numpy arrays
Benjamin Root
ben.root at ou.edu
Thu May 20 10:44:41 EDT 2010
>
> I gave two counterexamples of why.
>
The examples you gave aren't counterexamples. See below...
On Wed, May 19, 2010 at 7:06 PM, Darren Dale <dsdale24 at gmail.com> wrote:
> On Wed, May 19, 2010 at 4:19 PM, <josef.pktd at gmail.com> wrote:
> > On Wed, May 19, 2010 at 4:08 PM, Darren Dale <dsdale24 at gmail.com> wrote:
> >> I have a question about creation of numpy arrays from a list of
> >> objects, which bears on the Quantities project and also on masked
> >> arrays:
> >>
> >>>>> import quantities as pq
> >>>>> import numpy as np
> >>>>> a, b = 2*pq.m,1*pq.s
> >>>>> np.array([a, b])
> >> array([ 12., 1.])
> >>
> >> Why doesn't that create an object array? Similarly:
> >>
>
Consider the use case of a person creating a 1-D numpy array:
> np.array([12.0, 1.0])
array([ 12., 1.])
How is python supposed to tell the difference between
> np.array([a, b])
and
> np.array([12.0, 1.0])
?
It can't, and there are plenty of times when one wants to explicitly
initialize a small numpy array with a few discrete variables.
> >>>>> m = np.ma.array([1], mask=[True])
> >>>>> m
> >> masked_array(data = [--],
> >> mask = [ True],
> >> fill_value = 999999)
> >>
> >>>>> np.array([m])
> >> array([[1]])
> >>
>
Again, this is expected behavior. Numpy saw an array of an array,
therefore, it produced a 2-D array. Consider the following:
> np.array([[12, 4, 1], [32, 51, 9]])
I, as a user, expect numpy to create a 2-D array (2 rows, 3 columns) from
that array of arrays.
> >> This has broader implications than just creating arrays, for example:
> >>
> >>>>> np.sum([m, m])
> >> 2
> >>>>> np.sum([a, b])
> >> 13.0
> >>
>
If you wanted sums from each object, there are some better (i.e., more
clear) ways to go about it. If you have a predetermined number of
numpy-compatible objects, say a, b, c, then you can explicitly call the sum
for each one:
> a_sum = np.sum(a)
> b_sum = np.sum(b)
> c_sum = np.sum(c)
Which I think communicates the programmer's intention better than (for a
numpy array, x, composed of a, b, c):
> object_sums = np.sum(x) # <--- As a numpy user, I would expect a
scalar out of this, not an array
If you have an arbitrary number of objects (which is what I suspect you
have), then one could easily produce an array of sums (for a list, x, of
numpy-compatible objects) like so:
> object_sums = [np.sum(anObject) for anObject in x]
Performance-wise, it should be no more or less efficient than having numpy
somehow produce an array of sums from a single call to sum.
Readability-wise, it makes more sense because when you are treating objects
separately, a *list* of them is more intuitive than a numpy.array, which is
more-or-less treated as a single mathematical entity.
I hope that addresses your concerns.
Ben Root
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