[Numpy-discussion] 64-bit Fedora 9 a=numpy.zeros(0x80000000, dtype='b1')
Sebastian
sebas0 at gmail.com
Fri Sep 11 15:22:48 EDT 2009
Hello,
The folks at stsci (Jim T.) are not able to reproduce this error with
1.4.0.dev7362 so I guess there is something wrong with my numpy
installation.
I also tried '1.4.0.dev7362' and numpy1.3 (stable) but alas, the same error!
My system:
[root at siate numpy]# uname -a
Linux siate.iate.oac.uncor.edu 2.6.27.25-78.2.56.fc9.x86_64 #1 SMP Thu Jun
18 12:24:37 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux
Below is the numpy error and the the output of numpy, build and install as
attached:
python setup.py build > build.txt
python setup.py install > install.txt
Can't work out what is going wrong here. I don't think I'm missing some
dependency nor mixing compilers, but maybe I'm wrong, any hints?
best regards,
- Sebastian Gurovich
[root at siate soft]# ipython
Python 2.5.1 (r251:54863, Jun 15 2008, 18:24:56)
Type "copyright", "credits" or "license" for more information.
IPython 0.8.3 -- An enhanced Interactive Python.
? -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help -> Python's own help system.
object? -> Details about 'object'. ?object also works, ?? prints more.
In [6]: numpy.__version__
Out[6]: '1.4.0.dev7375'
In [7]: a=numpy.zeros(0x80000000,dtype='b1')
In [8]: a.data
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
/home/sebaguro/Desktop/soft/<ipython console> in <module>()
ValueError: size must be zero or positive
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non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2_7375
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib64
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib64
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/atlas
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/sse2
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
NOT AVAILABLE
atlas_blas_info:
libraries f77blas,cblas,atlas not found in /usr/local/lib64
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries f77blas,cblas,atlas not found in /usr/lib64/atlas
libraries f77blas,cblas,atlas not found in /usr/lib64/sse2
libraries f77blas,cblas,atlas not found in /usr/lib64
libraries f77blas,cblas,atlas not found in /usr/lib
NOT AVAILABLE
blas_info:
libraries blas not found in /usr/local/lib64
libraries blas not found in /usr/local/lib
FOUND:
libraries = ['blas']
library_dirs = ['/usr/lib64']
language = f77
FOUND:
libraries = ['blas']
library_dirs = ['/usr/lib64']
define_macros = [('NO_ATLAS_INFO', 1)]
language = f77
lapack_opt_info:
lapack_mkl_info:
mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib64
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib64
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/atlas
libraries lapack_atlas not found in /usr/lib64/atlas
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/sse2
libraries lapack_atlas not found in /usr/lib64/sse2
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
libraries lapack_atlas not found in /usr/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
numpy.distutils.system_info.atlas_threads_info
NOT AVAILABLE
atlas_info:
libraries f77blas,cblas,atlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries f77blas,cblas,atlas not found in /usr/lib64/atlas
libraries lapack_atlas not found in /usr/lib64/atlas
libraries f77blas,cblas,atlas not found in /usr/lib64/sse2
libraries lapack_atlas not found in /usr/lib64/sse2
libraries f77blas,cblas,atlas not found in /usr/lib64
libraries lapack_atlas not found in /usr/lib64
libraries f77blas,cblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
numpy.distutils.system_info.atlas_info
NOT AVAILABLE
lapack_info:
libraries lapack not found in /usr/local/lib64
libraries lapack not found in /usr/local/lib
FOUND:
libraries = ['lapack']
library_dirs = ['/usr/lib64']
language = f77
FOUND:
libraries = ['lapack', 'blas']
library_dirs = ['/usr/lib64']
define_macros = [('NO_ATLAS_INFO', 1)]
language = f77
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building library "npymath" sources
customize GnuFCompiler
Found executable /usr/bin/g77
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using config
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -c'
gcc: _configtest.c
_configtest.c:1: warning: conflicting types for built-in function ?exp?
gcc -pthread _configtest.o -o _configtest
_configtest.o: In function `main':
/home/sebaguro/Desktop/soft/numpy/_configtest.c:6: undefined reference to `exp'
collect2: ld returned 1 exit status
_configtest.o: In function `main':
/home/sebaguro/Desktop/soft/numpy/_configtest.c:6: undefined reference to `exp'
collect2: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -c'
gcc: _configtest.c
_configtest.c:1: warning: conflicting types for built-in function ?exp?
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building extension "numpy.core._sort" sources
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h' to sources.
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.multiarray" sources
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h' to sources.
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.umath" sources
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h' to sources.
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__ufunc_api.h' to sources.
adding 'build/src.linux-x86_64-2.5/numpy/core/src/umath' to include_dirs.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/src/umath/funcs.inc', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core.scalarmath" sources
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h' to sources.
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__ufunc_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core._dotblas" sources
building extension "numpy.core.umath_tests" sources
building extension "numpy.core.multiarray_tests" sources
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
adding 'numpy/linalg/lapack_litemodule.c' to sources.
adding 'numpy/linalg/python_xerbla.c' to sources.
building extension "numpy.random.mtrand" sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -c'
gcc: _configtest.c
gcc -pthread _configtest.o -o _configtest
_configtest
failure.
removing: _configtest.c _configtest.o _configtest
building data_files sources
build_src: building npy-pkg config files
running build_py
copying numpy/version.py -> build/lib.linux-x86_64-2.5/numpy
copying build/src.linux-x86_64-2.5/numpy/__config__.py -> build/lib.linux-x86_64-2.5/numpy
copying build/src.linux-x86_64-2.5/numpy/distutils/__config__.py -> build/lib.linux-x86_64-2.5/numpy/distutils
copying numpy/f2py/__svn_version__.py -> build/lib.linux-x86_64-2.5/numpy/f2py
copying numpy/core/__svn_version__.py -> build/lib.linux-x86_64-2.5/numpy/core
running build_clib
customize UnixCCompiler
customize UnixCCompiler using build_clib
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using build_ext
running scons
running build_scripts
adding 'build/scripts.linux-x86_64-2.5/f2py' to scripts
running install_lib
copying build/lib.linux-x86_64-2.5/numpy/f2py/__svn_version__.py -> /usr/lib64/python2.5/site-packages/numpy/f2py
copying build/lib.linux-x86_64-2.5/numpy/distutils/__config__.py -> /usr/lib64/python2.5/site-packages/numpy/distutils
copying build/lib.linux-x86_64-2.5/numpy/core/__svn_version__.py -> /usr/lib64/python2.5/site-packages/numpy/core
copying build/lib.linux-x86_64-2.5/numpy/__config__.py -> /usr/lib64/python2.5/site-packages/numpy
copying build/lib.linux-x86_64-2.5/numpy/version.py -> /usr/lib64/python2.5/site-packages/numpy
byte-compiling /usr/lib64/python2.5/site-packages/numpy/f2py/__svn_version__.py to __svn_version__.pyc
byte-compiling /usr/lib64/python2.5/site-packages/numpy/distutils/__config__.py to __config__.pyc
byte-compiling /usr/lib64/python2.5/site-packages/numpy/core/__svn_version__.py to __svn_version__.pyc
byte-compiling /usr/lib64/python2.5/site-packages/numpy/__config__.py to __config__.pyc
byte-compiling /usr/lib64/python2.5/site-packages/numpy/version.py to version.pyc
running install_scripts
changing mode of /usr/bin/f2py to 755
running install_data
copying install.txt -> /usr/lib64/python2.5/site-packages/numpy
copying build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h -> /usr/lib64/python2.5/site-packages/numpy/core/include/numpy
copying build/src.linux-x86_64-2.5/numpy/core/include/numpy/multiarray_api.txt -> /usr/lib64/python2.5/site-packages/numpy/core/include/numpy
copying build/src.linux-x86_64-2.5/numpy/core/include/numpy/__ufunc_api.h -> /usr/lib64/python2.5/site-packages/numpy/core/include/numpy
copying build/src.linux-x86_64-2.5/numpy/core/include/numpy/ufunc_api.txt -> /usr/lib64/python2.5/site-packages/numpy/core/include/numpy
copying build/src.linux-x86_64-2.5/numpy/core/lib/npy-pkg-config/npymath.ini -> /usr/lib64/python2.5/site-packages/numpy/core/lib/npy-pkg-config
copying build/src.linux-x86_64-2.5/numpy/core/lib/npy-pkg-config/mlib.ini -> /usr/lib64/python2.5/site-packages/numpy/core/lib/npy-pkg-config
running install_egg_info
Removing /usr/lib64/python2.5/site-packages/numpy-1.4.0.dev7375-py2.5.egg-info
Writing /usr/lib64/python2.5/site-packages/numpy-1.4.0.dev7375-py2.5.egg-info
running install_clib
-------------- next part --------------
non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2_7375
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib64
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib64
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/atlas
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/sse2
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
NOT AVAILABLE
atlas_blas_info:
libraries f77blas,cblas,atlas not found in /usr/local/lib64
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries f77blas,cblas,atlas not found in /usr/lib64/atlas
libraries f77blas,cblas,atlas not found in /usr/lib64/sse2
libraries f77blas,cblas,atlas not found in /usr/lib64
libraries f77blas,cblas,atlas not found in /usr/lib
NOT AVAILABLE
blas_info:
libraries blas not found in /usr/local/lib64
libraries blas not found in /usr/local/lib
FOUND:
libraries = ['blas']
library_dirs = ['/usr/lib64']
language = f77
FOUND:
libraries = ['blas']
library_dirs = ['/usr/lib64']
define_macros = [('NO_ATLAS_INFO', 1)]
language = f77
lapack_opt_info:
lapack_mkl_info:
mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib64
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib64
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/atlas
libraries lapack_atlas not found in /usr/lib64/atlas
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/sse2
libraries lapack_atlas not found in /usr/lib64/sse2
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
libraries lapack_atlas not found in /usr/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
numpy.distutils.system_info.atlas_threads_info
NOT AVAILABLE
atlas_info:
libraries f77blas,cblas,atlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries f77blas,cblas,atlas not found in /usr/lib64/atlas
libraries lapack_atlas not found in /usr/lib64/atlas
libraries f77blas,cblas,atlas not found in /usr/lib64/sse2
libraries lapack_atlas not found in /usr/lib64/sse2
libraries f77blas,cblas,atlas not found in /usr/lib64
libraries lapack_atlas not found in /usr/lib64
libraries f77blas,cblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
numpy.distutils.system_info.atlas_info
NOT AVAILABLE
lapack_info:
libraries lapack not found in /usr/local/lib64
libraries lapack not found in /usr/local/lib
FOUND:
libraries = ['lapack']
library_dirs = ['/usr/lib64']
language = f77
FOUND:
libraries = ['lapack', 'blas']
library_dirs = ['/usr/lib64']
define_macros = [('NO_ATLAS_INFO', 1)]
language = f77
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building library "npymath" sources
customize GnuFCompiler
Found executable /usr/bin/g77
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using config
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -c'
gcc: _configtest.c
_configtest.c:1: warning: conflicting types for built-in function ?exp?
gcc -pthread _configtest.o -o _configtest
_configtest.o: In function `main':
/home/sebaguro/Desktop/soft/numpy/_configtest.c:6: undefined reference to `exp'
collect2: ld returned 1 exit status
_configtest.o: In function `main':
/home/sebaguro/Desktop/soft/numpy/_configtest.c:6: undefined reference to `exp'
collect2: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -c'
gcc: _configtest.c
_configtest.c:1: warning: conflicting types for built-in function ?exp?
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building extension "numpy.core._sort" sources
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h' to sources.
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.multiarray" sources
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h' to sources.
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.umath" sources
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h' to sources.
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__ufunc_api.h' to sources.
adding 'build/src.linux-x86_64-2.5/numpy/core/src/umath' to include_dirs.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/src/umath/funcs.inc', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core.scalarmath" sources
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h' to sources.
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__ufunc_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/include/numpy/config.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/numpyconfig.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__multiarray_api.h', 'build/src.linux-x86_64-2.5/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core._dotblas" sources
building extension "numpy.core.umath_tests" sources
building extension "numpy.core.multiarray_tests" sources
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
adding 'numpy/linalg/lapack_litemodule.c' to sources.
adding 'numpy/linalg/python_xerbla.c' to sources.
building extension "numpy.random.mtrand" sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.5 -c'
gcc: _configtest.c
gcc -pthread _configtest.o -o _configtest
_configtest
failure.
removing: _configtest.c _configtest.o _configtest
building data_files sources
build_src: building npy-pkg config files
running build_py
copying numpy/version.py -> build/lib.linux-x86_64-2.5/numpy
copying build/src.linux-x86_64-2.5/numpy/__config__.py -> build/lib.linux-x86_64-2.5/numpy
copying build/src.linux-x86_64-2.5/numpy/distutils/__config__.py -> build/lib.linux-x86_64-2.5/numpy/distutils
copying numpy/f2py/__svn_version__.py -> build/lib.linux-x86_64-2.5/numpy/f2py
copying numpy/core/__svn_version__.py -> build/lib.linux-x86_64-2.5/numpy/core
running build_clib
customize UnixCCompiler
customize UnixCCompiler using build_clib
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using build_ext
running scons
running build_scripts
adding 'build/scripts.linux-x86_64-2.5/f2py' to scripts
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