[Numpy-discussion] building numpy/scipy
Mike Landis
mlandis001 at comcast.net
Fri Jan 2 22:10:07 EST 2009
Maybe the reason I'm having trouble is that I'm trying to get it
working on Windows, when almost everyone else is running on Linux? I
have cygwin with f77, g++, make, ... installed, but it's definitely
not a Linux machine. I'm working from the windows install
documentation page. Maybe there are additional steps that you
wouldn't have on Linux. It's not clear whether BLAS and LAPACK and
ATLAS are all distinct or if building one gets you one or more of the
others, e.g. the ATLAS build produces both blas and lapack
directories. Is there a third ATLAS library?
When I set up site.cfg in site-packages/numpy and run "python
setup.py install" from there, it complains that this isn't the right
place to run setup.py, so I put the site.cfg in d:\temp\numpy-1.2.1\
and ran setup.py install there. I now have ATLAS libraries, so my
site.cfg looks like this:
[atlas]
library_dirs = d:\Docs\ATLAS\build\lib
atlas_libs = lapack, f77blas, cblas, atlas
-----------------------------------------------------
Some good news, some bad, details below. Any suggestions would be
appreciated...
Thanks, Mike
Running from numpy source directory.
blas_opt_info:
blas_mkl_info:
libraries mkl, vml, guide not found in d:\Programs\Python25\lib
libraries mkl, vml, guide not found in C:\
libraries mkl, vml, guide not found in d:\Programs\Python25\libs
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['lapack', 'f77blas', ;cblas', 'atlas']
library_dirs = ['d:\\Docs\\ATLAS\\build\\lib']
language = c
No module named msvccompiler in numpy.disutils; trying from disutils
FOUND:
libraries = ['lapack', 'f77blas', ;cblas', 'atlas']
library_dirs = ['d:\\Docs\\ATLAS\\build\\lib']
language = c
define_macros = [('ATLAS_INFO', '"\\"?.?.?\\""')]
lapack_opt_info:
lapack_mkl_info:
mkl_info:
libraries mkl, vml, guide not found in d:\Programs\Python25\lib
libraries mkl, vml, guide not found in C:\
libraries mkl, vml, guide not found in d:\Programs\Python25\libs
NOT AVAILABLE
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries lapack_atlas not found in d:\Docs\ATLAS\build\lib
numpy.disutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
d:\temp\numpy-1.2.1\numpy\disutils\system_info.py:955: UserWarning:
********************************************************************************
Lapack library (from ATLAS) is probably incomplete:
size of d:\Docs\ATLAS\build\lib\libapack.a is 251k (expected >4000k)
Follow the instructions in the KNOWN PROBLEMS section of the file
numpy/INSTALL.txt. [ NOTE: There is no such section in this file. ]
********************************************************************************
warnings.warn(message)
Setting PTATLAS=ATLAS
FOUND:
libraries = ['lapack', 'lapack', 'f77blas', ;cblas', 'atlas']
library_dirs = ['d:\\Docs\\ATLAS\\build\\lib']
language = c
No module named msvccompiler in numpy.disutils; trying from disutils
FOUND:
libraries = ['lapack', 'lapack', 'f77blas', ;cblas', 'atlas']
library_dirs = ['d:\\Docs\\ATLAS\\build\\lib']
language = c
define_macros = [('ATLAS_INFO', '"\\"?.?.?\\""')]
could not resolve pattern in '': '*.txt'
non-existing path in '': 'COMPATIBILITY'
running install
running build
running config_cc
unifying config_cc, config, build_clib, build_ext, build commands
--compiler options
running config_fc
unifying config_fc, config, build_clib, build_ext, build commands
--fcompiler options
running build_src
building py_modules sources
building extension "numpy.core.multiarray" sources
adding 'build\src.win32-2.5\numpy\core\include/numpy\config.h' to sources.
adding
'build\src.win32-2.5\numpy\core\include/numpy\numpyconfig.h' to sources.
executing numpy\core\code_generators\generate_numpy_api.py
adding
'build\src.win32-2.5\numpy\core\include/numpy\__multiarray_api.h' to sources.
adding 'build\src.win32-2.5\numpy\core\src' to include_dirs.
numpy.core - nothing done with h_files =
['build\\src.win32-2.5\\numpy\\core\\src\\scalartypes.inc',
'build\\src.win32-2.5\\numpy\\core\\src\\arraytypes.inc',
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\config.h',
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\numpyconfig.h',
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\__multiarray_api.h']
building extension "numpy.core.umath" sources
adding 'build\src.win32-2.5\numpy\core\include/numpy\config.h' to sources.
adding
'build\src.win32-2.5\numpy\core\include/numpy\numpyconfig.h' to sources.
executing numpy\core\code_generators\generate_ufunc_api.py
adding
'build\src.win32-2.5\numpy\core\include/numpy\__ufunc_api.h' to sources.
adding 'build\src.win32-2.5\numpy\core\src' to include_dirs.
numpy.core - nothing done with h_files =
['build\\src.win32-2.5\\numpy\\core\\src\\scalartypes.inc',
'build\\src.win32-2.5\\numpy\\core\\src\\arraytypes.inc',
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\config.h',
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\numpyconfig.h',
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\__ufunc_api.h']
building extension "numpy.core._sort" sources
adding 'build\src.win32-2.5\numpy\core\include/numpy\config.h' to sources.
adding
'build\src.win32-2.5\numpy\core\include/numpy\numpyconfig.h' to sources.
executing numpy\core\code_generators\generate_numpy_api.py
adding
'build\src.win32-2.5\numpy\core\include/numpy\__multiarray_api.h' to sources.
numpy.core - nothing done with h_files =
['build\\src.win32-2.5\\numpy\\core\\include/numpy\\config.h',
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\numpyconfig.h',
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\__multiarray_api.h']
building extension "numpy.core.scalarmath" sources
adding 'build\src.win32-2.5\numpy\core\include/numpy\config.h' to sources.
adding
'build\src.win32-2.5\numpy\core\include/numpy\numpyconfig.h' to sources.
executing numpy\core\code_generators\generate_numpy_api.py
adding
'build\src.win32-2.5\numpy\core\include/numpy\__multiarray_api.h' to sources.
executing numpy\core\code_generators\generate_ufunc_api.py
adding
'build\src.win32-2.5\numpy\core\include/numpy\__ufunc_api.h' to sources.
numpy.core - nothing done with h_files =
['build\\src.win32-2.5\\numpy\\core\\include/numpy\\config.h',
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\numpyconfig.h',
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\__multiarray_api.h',
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\__ufunc_api.h']
building extension "numpy.core._dotblas" sources
adding 'numpy\core\blasdot\_dotblas.c' to sources.
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
### Warning: python_xerbla.c is disabled ###
adding 'numpy\linalg\lapack_litemodule.c' to sources.
building extension "numpy.random.mtrand" sources
Traceback (most recent call last):
File "setup.py", line 96, in <module>
setup_package()
File "setup.py", line 89, in setup_package
configuration=configuration )
File
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\core.py",
line 184, in setup
File "d:\programs\python25\lib\distutils\core.py", line 151, in setup
dist.run_commands()
File "d:\programs\python25\lib\distutils\dist.py", line 974, in run_commands
self.run_command(cmd)
File "d:\programs\python25\lib\distutils\dist.py", line 994, in run_command
cmd_obj.run()
File
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\install.py",
line 49, in run
File "d:\programs\python25\lib\distutils\command\install.py", line
506, in run
self.run_command('build')
File "d:\programs\python25\lib\distutils\cmd.py", line 333, in run_command
self.distribution.run_command(command)
File "d:\programs\python25\lib\distutils\dist.py", line 994, in run_command
cmd_obj.run()
File
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\build.py",
line 37, in run
File "d:\programs\python25\lib\distutils\command\build.py", line 112, in run
self.run_command(cmd_name)
File "d:\programs\python25\lib\distutils\cmd.py", line 333, in run_command
self.distribution.run_command(command)
File "d:\programs\python25\lib\distutils\dist.py", line 994, in run_command
cmd_obj.run()
File
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\build_src.py",
line 130, in run
File
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\build_src.py",
line 147, in build_sources
File
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\build_src.py",
line 250, in build_extension_sources
File
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\build_src.py",
line 307, in generate_sources
File "numpy\random\setup.py", line 11, in generate_libraries
if config_cmd.try_run(tc):
File "d:\programs\python25\lib\distutils\command\config.py", line
278, in try_run
self._check_compiler()
File
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\config.py",
line 26, in _check_compiler
File "d:\programs\python25\lib\distutils\command\config.py", line
107, in _check_compiler
dry_run=self.dry_run, force=1)
File
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\ccompiler.py",
line 366, in new_compiler
File
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\mingw32ccompiler.py",
line 46, in __init__
File "d:\programs\python25\lib\distutils\cygwinccompiler.py", line
84, in __init__
get_versions()
File "d:\programs\python25\lib\distutils\cygwinccompiler.py", line
424, in get_versions
ld_version = StrictVersion(result.group(1))
File "d:\programs\python25\lib\distutils\version.py", line 40, in __init__
self.parse(vstring)
File "d:\programs\python25\lib\distutils\version.py", line 107, in parse
raise ValueError, "invalid version number '%s'" % vstring
ValueError: invalid version number '2.18.50.20080625'
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