[Numpy-discussion] numpy installation as non root using site.cfg
Poul Georg Moses
pgmoses at engineering.ucsb.edu
Fri Sep 26 19:07:40 EDT 2008
Dear mailing list
I am trying to install numpy-1.1.1 on a cluster where I do not have root
permission. I have succesfully installed \
python2.5.2. I am using the cite.cfg file to include the blas and atlas
libraries. I have done that by setting the\
defaults to:
library_dirs = /usr/lib
include_dirs = /usr/include
where blas and atlas is located. Then I type: python setup.py install
--home=$HOME
and get the following output
Running from numpy source directory.
F2PY Version 2_5585
Traceback (most recent call last):
File "setup.py", line 96, in <module>
setup_package()
File "setup.py", line 89, in setup_package
configuration=configuration )
File "/data/pgmoses/SourceCode/numpy-1.1.1/numpy/distutils/core.py", line
150, in setup
config = configuration()
File "setup.py", line 56, in configuration
config.add_subpackage('numpy')
File "/data/pgmoses/SourceCode/numpy-1.1.1/numpy/distutils/misc_util.py",
line 850, in add_subpackage
caller_level = 2)
File "/data/pgmoses/SourceCode/numpy-1.1.1/numpy/distutils/misc_util.py",
line 833, in get_subpackage
caller_level = caller_level + 1)
File "/data/pgmoses/SourceCode/numpy-1.1.1/numpy/distutils/misc_util.py",
line 780, in _get_configuration_from_s\
etup_py
config = setup_module.configuration(*args)
File "numpy/setup.py", line 9, in configuration
config.add_subpackage('core')
File "/data/pgmoses/SourceCode/numpy-1.1.1/numpy/distutils/misc_util.py",
line 850, in add_subpackage
caller_level = 2)
File "/data/pgmoses/SourceCode/numpy-1.1.1/numpy/distutils/misc_util.py",
line 833, in get_subpackage
caller_level = caller_level + 1)
File "/data/pgmoses/SourceCode/numpy-1.1.1/numpy/distutils/misc_util.py",
line 780, in _get_configuration_from_s\
etup_py
config = setup_module.configuration(*args)
File "numpy/core/setup.py", line 299, in configuration
blas_info = get_info('blas_opt',0)
File
"/data/pgmoses/SourceCode/numpy-1.1.1/numpy/distutils/system_info.py", line
267, in get_info
return cl().get_info(notfound_action)
File
"/data/pgmoses/SourceCode/numpy-1.1.1/numpy/distutils/system_info.py", line
366, in __init__
self.parse_config_files()
File
"/data/pgmoses/SourceCode/numpy-1.1.1/numpy/distutils/system_info.py", line
372, in parse_config_files
self.cp.read(self.files)
File "/data/pgmoses/lib/python2.5/ConfigParser.py", line 267, in read
self._read(fp, filename)
File "/data/pgmoses/lib/python2.5/ConfigParser.py", line 462, in _read
raise MissingSectionHeaderError(fpname, lineno, line)
ConfigParser.MissingSectionHeaderError: File contains no section headers.
file: /data/pgmoses/SourceCode/numpy-1.1.1/site.cfg, line: 60
'library_dirs = /usr/lib\n'
Do you have any suggestion to what I might be doing wrong
Best regards,
Poul Georg Moses
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