From bertrand.thirion at inria.fr  Mon Sep  4 17:11:32 2023
From: bertrand.thirion at inria.fr (Bertrand Thirion)
Date: Mon, 4 Sep 2023 23:11:32 +0200
Subject: [Neuroimaging] CogBases: Cognitive neuroscience meets
 neuroinformatics
Message-ID: <63a589a5-6eac-b90b-b687-f3ea3bd482a7@inria.fr>

Want to learn about using large databases and open source software for 
MR-based neuroscience? Come to CogBases in Paris, onOct. 10-11: 
https://neuroanatomy.github.io/cogbases-2023
Check the speaker list including Pierre Bellec, Russ Poldrack, Sarah 
Genon, Camille Maumet, J?r?me Dockes and Angela Laird?
and the tutorials from Justine Hansen, Timo Disckscheid, J.B. Poline and 
Demian Wassermann.
Register here: 
https://docs.google.com/forms/d/e/1FAIpQLScZLHB5Ybf4fliCGbZ9k0cSaXpyLlyH-BIz1GMr4Wns35LA8g/viewform

Best,

Bertrand Thirion
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From Daniel.Huber at uibk.ac.at  Thu Sep  7 04:13:52 2023
From: Daniel.Huber at uibk.ac.at (Huber, Daniel Andreas)
Date: Thu, 7 Sep 2023 08:13:52 +0000
Subject: [Neuroimaging] CogBases: Cognitive neuroscience meets
 neuroinformatics
Message-ID: <8ec4cb4a4d50401397d450668d6bb31c@uibk.ac.at>

Dear Organizers of CogBases,

As I will not be able to come to Paris, I would like to ask, if there is a possibility to join the presentations online?

Thanks in advance!
Best regards,
Daniel Huber



--
Daniel Huber
Department of Psychology
University of Innsbruck
Austria
--



-------- Forwarded Message --------
Subject:

[Neuroimaging] CogBases: Cognitive neuroscience meets neuroinformatics

Date:

Mon, 4 Sep 2023 23:11:32 +0200

From:

Bertrand Thirion <bertrand.thirion at inria.fr><mailto:bertrand.thirion at inria.fr>

Reply-To:

Neuroimaging analysis in Python <neuroimaging at python.org><mailto:neuroimaging at python.org>

To:

neuroimaging at python.org<mailto:neuroimaging at python.org>



Want to learn about using large databases and open source software for MR-based neuroscience? Come to CogBases in Paris, onOct. 10-11: https://neuroanatomy.github.io/cogbases-2023
Check the speaker list including Pierre Bellec, Russ Poldrack, Sarah Genon, Camille Maumet, J?r?me Dockes and Angela Laird...
and the tutorials from Justine Hansen, Timo Disckscheid, J.B. Poline and Demian Wassermann.
Register here: https://docs.google.com/forms/d/e/1FAIpQLScZLHB5Ybf4fliCGbZ9k0cSaXpyLlyH-BIz1GMr4Wns35LA8g/viewform


Best,

Bertrand Thirion




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From garyfallidis at gmail.com  Wed Sep 13 20:33:08 2023
From: garyfallidis at gmail.com (Eleftherios Garyfallidis)
Date: Wed, 13 Sep 2023 20:33:08 -0400
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant (4
 years)
Message-ID: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>

Dear all,

I am happy to announce that I received a new grant with co-PIs Rokem,
Harezlak and Tang to continue developing the DIPY software platform.

In summary, we are going to:

a) Introduce new pre-processing methods (all sorts of new approaches - many
surprises there) !
b) Introduce new bundle analytics methods (tractometry + shape +
connectivity) !
c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
d) Validate tractography with human and non-human primate data !

More information about the grant can be found here:
https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068

Thank you all for your encouragement and especially those from our
community that provided
letters of support.

Best regards,
Eleftherios Garyfallidis, PhD
Director of Graduate Studies
Associate Professor
Intelligent Systems Engineering
Indiana University
Luddy Hall 700 N Woodlawn
Bloomington, IN 47408
GRG <https://grg.luddy.indiana.edu/> | DIPY <http://dipy.org/> | FURY
<https://fury.gl/>
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From maxime.descoteaux at gmail.com  Wed Sep 13 20:35:20 2023
From: maxime.descoteaux at gmail.com (Maxime Descoteaux)
Date: Wed, 13 Sep 2023 20:35:20 -0400
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant
 (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <CAChMOMe8xuthDO7RpPa4_-VYpm1HNoM+mdRTBNkA0=BFi0Qv3A@mail.gmail.com>

Congrats! Great news!

Max


On Wed, Sep 13, 2023 at 8:33?PM Eleftherios Garyfallidis <
garyfallidis at gmail.com> wrote:

> Dear all,
>
> I am happy to announce that I received a new grant with co-PIs Rokem,
> Harezlak and Tang to continue developing the DIPY software platform.
>
> In summary, we are going to:
>
> a) Introduce new pre-processing methods (all sorts of new approaches -
> many surprises there) !
> b) Introduce new bundle analytics methods (tractometry + shape +
> connectivity) !
> c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
> d) Validate tractography with human and non-human primate data !
>
> More information about the grant can be found here:
>
> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068
>
> Thank you all for your encouragement and especially those from our
> community that provided
> letters of support.
>
> Best regards,
> Eleftherios Garyfallidis, PhD
> Director of Graduate Studies
> Associate Professor
> Intelligent Systems Engineering
> Indiana University
> Luddy Hall 700 N Woodlawn
> Bloomington, IN 47408
> GRG <https://grg.luddy.indiana.edu/> | DIPY <http://dipy.org/> | FURY
> <https://fury.gl/>
>
>
>
>
>
>
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
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From satra at mit.edu  Wed Sep 13 20:55:53 2023
From: satra at mit.edu (Satrajit Ghosh)
Date: Wed, 13 Sep 2023 20:55:53 -0400
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant
 (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <CA+A4wOkWixjTCmr=r3T0cncFKZB5cvZJoHOKqVSrrHi-MKWDyQ@mail.gmail.com>

congrats!

cheers,

satra

On Wed, Sep 13, 2023 at 8:33?PM Eleftherios Garyfallidis <
garyfallidis at gmail.com> wrote:

> Dear all,
>
> I am happy to announce that I received a new grant with co-PIs Rokem,
> Harezlak and Tang to continue developing the DIPY software platform.
>
> In summary, we are going to:
>
> a) Introduce new pre-processing methods (all sorts of new approaches -
> many surprises there) !
> b) Introduce new bundle analytics methods (tractometry + shape +
> connectivity) !
> c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
> d) Validate tractography with human and non-human primate data !
>
> More information about the grant can be found here:
>
> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068
>
> Thank you all for your encouragement and especially those from our
> community that provided
> letters of support.
>
> Best regards,
> Eleftherios Garyfallidis, PhD
> Director of Graduate Studies
> Associate Professor
> Intelligent Systems Engineering
> Indiana University
> Luddy Hall 700 N Woodlawn
> Bloomington, IN 47408
> GRG <https://grg.luddy.indiana.edu/> | DIPY <http://dipy.org/> | FURY
> <https://fury.gl/>
>
>
>
>
>
>
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
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From skoudoro at iu.edu  Wed Sep 13 21:26:58 2023
From: skoudoro at iu.edu (Koudoro, Serge)
Date: Thu, 14 Sep 2023 01:26:58 +0000
Subject: [Neuroimaging] [External] DIPY receives new multimillion dollar
 NIH grant (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <CO1PR08MB6643661B854644791C82BDAEA8F7A@CO1PR08MB6643.namprd08.prod.outlook.com>

Exciting future for DIPY !  a lot of work coming and looking forward for it!

Congrats to the team !

Serge Koudoro
Software Developer
Intelligent Systems Engineering
Garyfallidis Research Group<https://grg.luddy.indiana.edu/>
School of Informatics, Computing, and Engineering
Luddy Hall
700 N Woodlawn Ave, 4056
Bloomington, IN 47408
skoudoro at iu.edu<mailto:skoudoro at indiana.edu>
________________________________
From: Neuroimaging <neuroimaging-bounces+skoudoro=iu.edu at python.org> on behalf of Eleftherios Garyfallidis <garyfallidis at gmail.com>
Sent: Wednesday, September 13, 2023 8:33 PM
To: dipy at python.org <dipy at python.org>; Neuroimaging analysis in Python <neuroimaging at python.org>; Harezlak, Jaroslaw <harezlak at iu.edu>; Ariel Rokem <arokem at uw.edu>; Tang, Wei <wt1 at iu.edu>; K. Serge <skab12 at gmail.com>
Subject: [External] [Neuroimaging] DIPY receives new multimillion dollar NIH grant (4 years)


This message was sent from a non-IU address. Please exercise caution when clicking links or opening attachments from external sources.


Dear all,

I am happy to announce that I received a new grant with co-PIs Rokem, Harezlak and Tang to continue developing the DIPY software platform.

In summary, we are going to:

a) Introduce new pre-processing methods (all sorts of new approaches - many surprises there) !
b) Introduce new bundle analytics methods (tractometry + shape + connectivity) !
c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
d) Validate tractography with human and non-human primate data !

More information about the grant can be found here:
https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068

Thank you all for your encouragement and especially those from our community that provided
letters of support.

Best regards,
Eleftherios Garyfallidis, PhD
Director of Graduate Studies
Associate Professor
Intelligent Systems Engineering
Indiana University
Luddy Hall 700 N Woodlawn
Bloomington, IN 47408
GRG<https://grg.luddy.indiana.edu/> | DIPY<http://dipy.org/> | FURY<https://fury.gl/>






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From andersonwinkler at gmail.com  Wed Sep 13 21:27:01 2023
From: andersonwinkler at gmail.com (Anderson M. Winkler)
Date: Wed, 13 Sep 2023 20:27:01 -0500
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant
 (4 years)
In-Reply-To: <CA+A4wOkWixjTCmr=r3T0cncFKZB5cvZJoHOKqVSrrHi-MKWDyQ@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
 <CA+A4wOkWixjTCmr=r3T0cncFKZB5cvZJoHOKqVSrrHi-MKWDyQ@mail.gmail.com>
Message-ID: <CALKxBNzC=xQPSszEz_6qj-Ggs7ZPSUkpM+S2G8km0dYm3bh34g@mail.gmail.com>

Awesome news! Big congrats!!

Sent from mobile. Please forgive the conciseness.


On Wed, Sep 13, 2023 at 20:01 Satrajit Ghosh <satra at mit.edu> wrote:

> congrats!
>
> cheers,
>
> satra
>
> On Wed, Sep 13, 2023 at 8:33?PM Eleftherios Garyfallidis <
> garyfallidis at gmail.com> wrote:
>
>> Dear all,
>>
>> I am happy to announce that I received a new grant with co-PIs Rokem,
>> Harezlak and Tang to continue developing the DIPY software platform.
>>
>> In summary, we are going to:
>>
>> a) Introduce new pre-processing methods (all sorts of new approaches -
>> many surprises there) !
>> b) Introduce new bundle analytics methods (tractometry + shape +
>> connectivity) !
>> c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud)
>> !
>> d) Validate tractography with human and non-human primate data !
>>
>> More information about the grant can be found here:
>>
>> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068
>>
>> Thank you all for your encouragement and especially those from our
>> community that provided
>> letters of support.
>>
>> Best regards,
>> Eleftherios Garyfallidis, PhD
>> Director of Graduate Studies
>> Associate Professor
>> Intelligent Systems Engineering
>> Indiana University
>> Luddy Hall 700 N Woodlawn
>> <https://www.google.com/maps/search/700+N+Woodlawn+Bloomington,+IN+47408?entry=gmail&source=g>
>> Bloomington, IN 47408
>> <https://www.google.com/maps/search/700+N+Woodlawn+Bloomington,+IN+47408?entry=gmail&source=g>
>> GRG <https://grg.luddy.indiana.edu/> | DIPY <http://dipy.org/> | FURY
>> <https://fury.gl/>
>>
>>
>>
>>
>>
>>
>> _______________________________________________
>> Neuroimaging mailing list
>> Neuroimaging at python.org
>> https://mail.python.org/mailman/listinfo/neuroimaging
>>
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
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From adluru at wisc.edu  Wed Sep 13 20:43:17 2023
From: adluru at wisc.edu (Nagesh Adluru)
Date: Thu, 14 Sep 2023 00:43:17 +0000
Subject: [Neuroimaging] [DIPY] DIPY receives new multimillion dollar NIH
 grant (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <DM4PR06MB8911C32FDE32B726A286E493B5F7A@DM4PR06MB8911.namprd06.prod.outlook.com>

Heartiest congratulations to the DIPY team and community!

Best to everyone!

Thank you and kind regards,
Nagesh

From: Eleftherios Garyfallidis <garyfallidis at gmail.com>
Date: Wednesday, September 13, 2023 at 7:36 PM
To: dipy at python.org <dipy at python.org>, Neuroimaging analysis in Python <neuroimaging at python.org>, Harezlak, Jaroslaw <harezlak at iu.edu>, Ariel Rokem <arokem at uw.edu>, Tang, Wei <wt1 at iu.edu>, K. Serge <skab12 at gmail.com>
Subject: [DIPY] DIPY receives new multimillion dollar NIH grant (4 years)
Dear all,

I am happy to announce that I received a new grant with co-PIs Rokem, Harezlak and Tang to continue developing the DIPY software platform.

In summary, we are going to:

a) Introduce new pre-processing methods (all sorts of new approaches - many surprises there) !
b) Introduce new bundle analytics methods (tractometry + shape + connectivity) !
c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
d) Validate tractography with human and non-human primate data !

More information about the grant can be found here:
https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068

Thank you all for your encouragement and especially those from our community that provided
letters of support.

Best regards,
Eleftherios Garyfallidis, PhD
Director of Graduate Studies
Associate Professor
Intelligent Systems Engineering
Indiana University
Luddy Hall 700 N Woodlawn
Bloomington, IN 47408
GRG<https://grg.luddy.indiana.edu/> | DIPY<http://dipy.org/> | FURY<https://fury.gl/>






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From ljimenez at ci3m.mx  Wed Sep 13 21:29:56 2023
From: ljimenez at ci3m.mx (=?utf-8?Q?Luis_Jim=C3=A9nez?=)
Date: Wed, 13 Sep 2023 19:29:56 -0600
Subject: [Neuroimaging] [DIPY] DIPY receives new multimillion dollar NIH
 grant (4 years)
In-Reply-To: <CA+A4wOkWixjTCmr=r3T0cncFKZB5cvZJoHOKqVSrrHi-MKWDyQ@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
 <CA+A4wOkWixjTCmr=r3T0cncFKZB5cvZJoHOKqVSrrHi-MKWDyQ@mail.gmail.com>
Message-ID: <108C69A8-A2CD-4CF6-B45A-3DDB246A445A@ci3m.mx>

Felicitaciones por el grant!!
Excelente equipo.

Luis Jimenez

> El 13 sep 2023, a las 18:55, Satrajit Ghosh <satra at mit.edu> escribi?:
> 
> congrats!
> 
> cheers,
> 
> satra
> 
> On Wed, Sep 13, 2023 at 8:33?PM Eleftherios Garyfallidis <garyfallidis at gmail.com <mailto:garyfallidis at gmail.com>> wrote:
> Dear all,
> 
> I am happy to announce that I received a new grant with co-PIs Rokem, Harezlak and Tang to continue developing the DIPY software platform.
> 
> In summary, we are going to:
> 
> a) Introduce new pre-processing methods (all sorts of new approaches - many surprises there) !
> b) Introduce new bundle analytics methods (tractometry + shape + connectivity) !
> c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
> d) Validate tractography with human and non-human primate data !
> 
> More information about the grant can be found here:
> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068 <https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068>
> 
> Thank you all for your encouragement and especially those from our community that provided
> letters of support. 
> 
> Best regards,
> Eleftherios Garyfallidis, PhD
> Director of Graduate Studies
> Associate Professor
> Intelligent Systems Engineering
> Indiana University
> Luddy Hall 700 N Woodlawn
> Bloomington, IN 47408
> GRG <https://grg.luddy.indiana.edu/> | DIPY <http://dipy.org/> | FURY <https://fury.gl/>
> 
> 
> 
> 
> 
> 
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org <mailto:Neuroimaging at python.org>
> https://mail.python.org/mailman/listinfo/neuroimaging <https://mail.python.org/mailman/listinfo/neuroimaging>
> _______________________________________________
> DIPY mailing list -- dipy at python.org <mailto:dipy at python.org>
> To unsubscribe send an email to dipy-leave at python.org <mailto:dipy-leave at python.org>
> https://mail.python.org/mailman3/lists/dipy.python.org/ <https://mail.python.org/mailman3/lists/dipy.python.org/>
> Member address: ljimenez at ci3m.mx <mailto:ljimenez at ci3m.mx>
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From barlennan at gmail.com  Wed Sep 13 21:48:58 2023
From: barlennan at gmail.com (Rob Reid)
Date: Wed, 13 Sep 2023 20:48:58 -0500
Subject: [Neuroimaging] [DIPY] Re: DIPY receives new multimillion dollar
 NIH grant (4 years)
In-Reply-To: <108C69A8-A2CD-4CF6-B45A-3DDB246A445A@ci3m.mx>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
 <CA+A4wOkWixjTCmr=r3T0cncFKZB5cvZJoHOKqVSrrHi-MKWDyQ@mail.gmail.com>
 <108C69A8-A2CD-4CF6-B45A-3DDB246A445A@ci3m.mx>
Message-ID: <CAO5XBBJeU3cRx5RMCjQZMM5ACKq0YpvPXRkp23SN_kt39PJymw@mail.gmail.com>

Congratulations!

On Wed, Sep 13, 2023 at 8:34?PM Luis Jim?nez <ljimenez at ci3m.mx> wrote:
>
> Felicitaciones por el grant!!
> Excelente equipo.
>
> Luis Jimenez
>
> El 13 sep 2023, a las 18:55, Satrajit Ghosh <satra at mit.edu> escribi?:
>
> congrats!
>
> cheers,
>
> satra
>
> On Wed, Sep 13, 2023 at 8:33?PM Eleftherios Garyfallidis <garyfallidis at gmail.com> wrote:
>>
>> Dear all,
>>
>> I am happy to announce that I received a new grant with co-PIs Rokem, Harezlak and Tang to continue developing the DIPY software platform.
>>
>> In summary, we are going to:
>>
>> a) Introduce new pre-processing methods (all sorts of new approaches - many surprises there) !
>> b) Introduce new bundle analytics methods (tractometry + shape + connectivity) !
>> c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
>> d) Validate tractography with human and non-human primate data !
>>
>> More information about the grant can be found here:
>> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068
>>
>> Thank you all for your encouragement and especially those from our community that provided
>> letters of support.
>>
>> Best regards,
>> Eleftherios Garyfallidis, PhD
>> Director of Graduate Studies
>> Associate Professor
>> Intelligent Systems Engineering
>> Indiana University
>> Luddy Hall 700 N Woodlawn
>> Bloomington, IN 47408
>> GRG | DIPY | FURY
>>
>>
>>
>>
>>
>>
>> _______________________________________________
>> Neuroimaging mailing list
>> Neuroimaging at python.org
>> https://mail.python.org/mailman/listinfo/neuroimaging
>
> _______________________________________________
> DIPY mailing list -- dipy at python.org
> To unsubscribe send an email to dipy-leave at python.org
> https://mail.python.org/mailman3/lists/dipy.python.org/
> Member address: ljimenez at ci3m.mx
>
>
> _______________________________________________
> DIPY mailing list -- dipy at python.org
> To unsubscribe send an email to dipy-leave at python.org
> https://mail.python.org/mailman3/lists/dipy.python.org/
> Member address: barlennan at gmail.com



-- 
Rob

From vincent.w.qing at gmail.com  Wed Sep 13 22:39:24 2023
From: vincent.w.qing at gmail.com (vincent.w.qing at gmail.com)
Date: Thu, 14 Sep 2023 10:39:24 +0800
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant
 (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <000801d9e6b4$b23379c0$169a6d40$@gmail.com>

Great news, big congrats!

 

Cheers,

Qing Wang (Vincent)

 

From: Neuroimaging <neuroimaging-bounces+vincent.w.qing=gmail.com at python.org> On Behalf Of Eleftherios Garyfallidis
Sent: Thursday, 14 September 2023 8:33 am
To: dipy at python.org; Neuroimaging analysis in Python <neuroimaging at python.org>; Harezlak, Jaroslaw <harezlak at iu.edu>; Ariel Rokem <arokem at uw.edu>; Tang, Wei <wt1 at iu.edu>; K. Serge <skab12 at gmail.com>
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant (4 years)

 

Dear all,

 

I am happy to announce that I received a new grant with co-PIs Rokem, Harezlak and Tang to continue developing the DIPY software platform.

 

In summary, we are going to:

 

a) Introduce new pre-processing methods (all sorts of new approaches - many surprises there) !

b) Introduce new bundle analytics methods (tractometry + shape + connectivity) !

c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !

d) Validate tractography with human and non-human primate data !

 

More information about the grant can be found here:

https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068

 

Thank you all for your encouragement and especially those from our community that provided

letters of support. 

 

Best regards,

Eleftherios Garyfallidis, PhD

Director of Graduate Studies

Associate Professor

Intelligent Systems Engineering

Indiana University

Luddy Hall 700 N Woodlawn

Bloomington, IN 47408

GRG <https://grg.luddy.indiana.edu/>  | DIPY <http://dipy.org/>  | FURY <https://fury.gl/> 

 

 

 

 

 

 

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From jevillalonr at gmail.com  Wed Sep 13 23:45:00 2023
From: jevillalonr at gmail.com (=?UTF-8?Q?Julio_Villal=C3=B3n?=)
Date: Wed, 13 Sep 2023 20:45:00 -0700
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant
 (4 years)
In-Reply-To: <000801d9e6b4$b23379c0$169a6d40$@gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
 <000801d9e6b4$b23379c0$169a6d40$@gmail.com>
Message-ID: <CAJ+byPQ2k6pfYbUhQNCqaK6beLh7KH5d-rW9_95Qeb5TUQhYgg@mail.gmail.com>

Congratulations!!

El mi?, 13 sept 2023 a las 19:39, <vincent.w.qing at gmail.com> escribi?:

> Great news, big congrats!
>
>
>
> Cheers,
>
> Qing Wang (Vincent)
>
>
>
> *From:* Neuroimaging <neuroimaging-bounces+vincent.w.qing=
> gmail.com at python.org> *On Behalf Of *Eleftherios Garyfallidis
> *Sent:* Thursday, 14 September 2023 8:33 am
> *To:* dipy at python.org; Neuroimaging analysis in Python <
> neuroimaging at python.org>; Harezlak, Jaroslaw <harezlak at iu.edu>; Ariel
> Rokem <arokem at uw.edu>; Tang, Wei <wt1 at iu.edu>; K. Serge <skab12 at gmail.com>
> *Subject:* [Neuroimaging] DIPY receives new multimillion dollar NIH grant
> (4 years)
>
>
>
> Dear all,
>
>
>
> I am happy to announce that I received a new grant with co-PIs Rokem,
> Harezlak and Tang to continue developing the DIPY software platform.
>
>
>
> In summary, we are going to:
>
>
>
> a) Introduce new pre-processing methods (all sorts of new approaches -
> many surprises there) !
>
> b) Introduce new bundle analytics methods (tractometry + shape +
> connectivity) !
>
> c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
>
> d) Validate tractography with human and non-human primate data !
>
>
>
> More information about the grant can be found here:
>
>
> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068
>
>
>
> Thank you all for your encouragement and especially those from our
> community that provided
>
> letters of support.
>
>
>
> Best regards,
>
> Eleftherios Garyfallidis, PhD
>
> Director of Graduate Studies
>
> Associate Professor
>
> Intelligent Systems Engineering
>
> Indiana University
>
> Luddy Hall 700 N Woodlawn
>
> Bloomington, IN 47408
>
> GRG <https://grg.luddy.indiana.edu/> | DIPY <http://dipy.org/> | FURY
> <https://fury.gl/>
>
>
>
>
>
>
>
>
>
>
>
>
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
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From j.davidgriffiths at gmail.com  Thu Sep 14 00:03:26 2023
From: j.davidgriffiths at gmail.com (John Griffiths)
Date: Thu, 14 Sep 2023 00:03:26 -0400
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant
 (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <CACcz1g2Gfsx3GnCc28Xo0=AgQ5POEEEk_CPqXuYn8Egn8S228w@mail.gmail.com>

Amazing, congrats elef & team!

On Wed, Sept 13, 2023, 8:33 p.m. Eleftherios Garyfallidis <
garyfallidis at gmail.com> wrote:

> Dear all,
>
> I am happy to announce that I received a new grant with co-PIs Rokem,
> Harezlak and Tang to continue developing the DIPY software platform.
>
> In summary, we are going to:
>
> a) Introduce new pre-processing methods (all sorts of new approaches -
> many surprises there) !
> b) Introduce new bundle analytics methods (tractometry + shape +
> connectivity) !
> c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
> d) Validate tractography with human and non-human primate data !
>
> More information about the grant can be found here:
>
> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068
>
> Thank you all for your encouragement and especially those from our
> community that provided
> letters of support.
>
> Best regards,
> Eleftherios Garyfallidis, PhD
> Director of Graduate Studies
> Associate Professor
> Intelligent Systems Engineering
> Indiana University
> Luddy Hall 700 N Woodlawn
> Bloomington, IN 47408
> GRG <https://grg.luddy.indiana.edu/> | DIPY <http://dipy.org/> | FURY
> <https://fury.gl/>
>
>
>
>
>
>
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
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From demian.wassermann at inria.fr  Thu Sep 14 01:30:28 2023
From: demian.wassermann at inria.fr (Demian Wassermann)
Date: Thu, 14 Sep 2023 07:30:28 +0200 (CEST)
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant
 (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <1929283386.1541728.1694669428570.JavaMail.zimbra@zcs-store4.inria.fr>

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From bertrand.thirion at inria.fr  Thu Sep 14 02:27:05 2023
From: bertrand.thirion at inria.fr (Bertrand Thirion)
Date: Thu, 14 Sep 2023 08:27:05 +0200
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant
 (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <42d65881-703c-f607-ce65-a2bbc5b439aa@inria.fr>

Waou, congrats !

Bertrand

Le 14/09/2023 ? 02:33, Eleftherios Garyfallidis a ?crit?:
> Dear all,
>
> I am happy to announce that I received a new grant with co-PIs Rokem, 
> Harezlak and Tang to continue developing the DIPY software platform.
>
> In summary, we are going to:
>
> a) Introduce new pre-processing methods (all sorts of new approaches - 
> many surprises there) !
> b) Introduce new bundle analytics methods (tractometry?+ shape?+ 
> connectivity) !
> c) Optimize DIPY for speed (CPU/GPU) and memory?usage (desktop and 
> cloud) !
> d) Validate tractography with human and non-human primate data !
>
> More information about the grant can be found here:
> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068
>
> Thank you all for your encouragement and especially those from our 
> community that provided
> letters?of support.
>
> Best regards,
> Eleftherios Garyfallidis, PhD
> Director of Graduate Studies
> Associate Professor
> Intelligent Systems Engineering
> Indiana University
> Luddy Hall 700 N Woodlawn
> Bloomington, IN 47408
> GRG <https://grg.luddy.indiana.edu/>| DIPY <http://dipy.org/>| FURY 
> <https://fury.gl/>
>
>
>
>
>
>
>
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
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From markiewicz at stanford.edu  Thu Sep 14 02:44:06 2023
From: markiewicz at stanford.edu (Christopher Markiewicz)
Date: Thu, 14 Sep 2023 06:44:06 +0000
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant
 (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <DM8PR02MB8140933F04EBC722136F466FA9F7A@DM8PR02MB8140.namprd02.prod.outlook.com>

Awesome! Congrats!

Chris

________________________________
From: Neuroimaging <neuroimaging-bounces+markiewicz=stanford.edu at python.org> on behalf of Eleftherios Garyfallidis <garyfallidis at gmail.com>
Sent: Thursday, September 14, 2023 2:33:41 AM
To: dipy at python.org <dipy at python.org>; Neuroimaging analysis in Python <neuroimaging at python.org>; Harezlak, Jaroslaw <harezlak at iu.edu>; Ariel Rokem <arokem at uw.edu>; Tang, Wei <wt1 at iu.edu>; K. Serge <skab12 at gmail.com>
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant (4 years)

Dear all,

I am happy to announce that I received a new grant with co-PIs Rokem, Harezlak and Tang to continue developing the DIPY software platform.

In summary, we are going to:

a) Introduce new pre-processing methods (all sorts of new approaches - many surprises there) !
b) Introduce new bundle analytics methods (tractometry + shape + connectivity) !
c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
d) Validate tractography with human and non-human primate data !

More information about the grant can be found here:
https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068

Thank you all for your encouragement and especially those from our community that provided
letters of support.

Best regards,
Eleftherios Garyfallidis, PhD
Director of Graduate Studies
Associate Professor
Intelligent Systems Engineering
Indiana University
Luddy Hall 700 N Woodlawn
Bloomington, IN 47408
GRG<https://grg.luddy.indiana.edu/> | DIPY<http://dipy.org/> | FURY<https://fury.gl/>







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From yingying.wang at unl.edu  Wed Sep 13 22:18:26 2023
From: yingying.wang at unl.edu (Yingying Wang)
Date: Thu, 14 Sep 2023 02:18:26 +0000
Subject: [Neuroimaging] [DIPY] DIPY receives new multimillion dollar NIH
 grant (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <5885927A-9A52-4F5B-9179-420C69FDE72F@unl.edu>

?Awesome! Congratulations ?

Best regards,


Yingying Wang (she/her)

Associate Professor

University of Nebraska?Lincoln

Special Education and Communication Disorders

Center for Brain, Biology and Behavior

Neuroimaging for Language, Literacy and Learning<http://nl3.unl.edu/>

Office: +1(402)-472-0106
(Please excuse any typos as it was sent from my mobile device)



On Sep 13, 2023, at 7:35 PM, Eleftherios Garyfallidis <garyfallidis at gmail.com> wrote:

?
Non-NU Email
________________________________

Dear all,

I am happy to announce that I received a new grant with co-PIs Rokem, Harezlak and Tang to continue developing the DIPY software platform.

In summary, we are going to:

a) Introduce new pre-processing methods (all sorts of new approaches - many surprises there) !
b) Introduce new bundle analytics methods (tractometry + shape + connectivity) !
c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
d) Validate tractography with human and non-human primate data !

More information about the grant can be found here:
https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068<https://urldefense.com/v3/__https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUV6HnYumg$>

Thank you all for your encouragement and especially those from our community that provided
letters of support.

Best regards,
Eleftherios Garyfallidis, PhD
Director of Graduate Studies
Associate Professor
Intelligent Systems Engineering
Indiana University
Luddy Hall 700 N Woodlawn
Bloomington, IN 47408
GRG<https://urldefense.com/v3/__https://grg.luddy.indiana.edu/__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUWGKRtofg$> | DIPY<https://urldefense.com/v3/__http://dipy.org/__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUU4ZwjsSw$> | FURY<https://urldefense.com/v3/__https://fury.gl/__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUVIKLJJaA$>






_______________________________________________
DIPY mailing list -- dipy at python.org
To unsubscribe send an email to dipy-leave at python.org
https://urldefense.com/v3/__https://mail.python.org/mailman3/lists/dipy.python.org/__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUU01Y6i9Q$
Member address: yingying.wang at unl.edu
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From erick.canalesrodriguez at epfl.ch  Thu Sep 14 03:51:00 2023
From: erick.canalesrodriguez at epfl.ch (Erick Jorge Canales Rodriguez)
Date: Thu, 14 Sep 2023 07:51:00 +0000
Subject: [Neuroimaging] [DIPY] DIPY receives new multimillion dollar NIH
 grant (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <acf35ad9c0a143fcaead8df9b65f5249@epfl.ch>

Congratulations, Elef and dipy team!


I can't wait to see all the new methods you will introduce!


All the best,

Erick

________________________________
From: Eleftherios Garyfallidis <garyfallidis at gmail.com>
Sent: Thursday, September 14, 2023 2:33 AM
To: dipy at python.org; Neuroimaging analysis in Python; Harezlak, Jaroslaw; Ariel Rokem; Tang, Wei; K. Serge
Subject: [DIPY] DIPY receives new multimillion dollar NIH grant (4 years)

Dear all,

I am happy to announce that I received a new grant with co-PIs Rokem, Harezlak and Tang to continue developing the DIPY software platform.

In summary, we are going to:

a) Introduce new pre-processing methods (all sorts of new approaches - many surprises there) !
b) Introduce new bundle analytics methods (tractometry + shape + connectivity) !
c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
d) Validate tractography with human and non-human primate data !

More information about the grant can be found here:
https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068

Thank you all for your encouragement and especially those from our community that provided
letters of support.

Best regards,
Eleftherios Garyfallidis, PhD
Director of Graduate Studies
Associate Professor
Intelligent Systems Engineering
Indiana University
Luddy Hall 700 N Woodlawn
Bloomington, IN 47408
GRG<https://grg.luddy.indiana.edu/> | DIPY<http://dipy.org/> | FURY<https://fury.gl/>






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From andrada.ianus at neuro.fchampalimaud.org  Thu Sep 14 05:44:41 2023
From: andrada.ianus at neuro.fchampalimaud.org (Andrada Ianus)
Date: Thu, 14 Sep 2023 10:44:41 +0100
Subject: [Neuroimaging] [DIPY] DIPY receives new multimillion dollar NIH
 grant (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <CAKdyFJsGPTYBJkZ1_dp9NhDZXpzy5ogy3LhPWgWWEtP8AAZN0A@mail.gmail.com>

Congratulations! This is fantastic news!

Andrada

On Thu, Sep 14, 2023 at 1:35?AM Eleftherios Garyfallidis <
garyfallidis at gmail.com> wrote:

> Dear all,
>
> I am happy to announce that I received a new grant with co-PIs Rokem,
> Harezlak and Tang to continue developing the DIPY software platform.
>
> In summary, we are going to:
>
> a) Introduce new pre-processing methods (all sorts of new approaches -
> many surprises there) !
> b) Introduce new bundle analytics methods (tractometry + shape +
> connectivity) !
> c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
> d) Validate tractography with human and non-human primate data !
>
> More information about the grant can be found here:
>
> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068
>
> Thank you all for your encouragement and especially those from our
> community that provided
> letters of support.
>
> Best regards,
> Eleftherios Garyfallidis, PhD
> Director of Graduate Studies
> Associate Professor
> Intelligent Systems Engineering
> Indiana University
> Luddy Hall 700 N Woodlawn
> Bloomington, IN 47408
> GRG <https://grg.luddy.indiana.edu/> | DIPY <http://dipy.org/> | FURY
> <https://fury.gl/>
>
>
>
>
>
>
> _______________________________________________
> DIPY mailing list -- dipy at python.org
> To unsubscribe send an email to dipy-leave at python.org
> https://mail.python.org/mailman3/lists/dipy.python.org/
> Member address: andrada.ianus at neuro.fchampalimaud.org
>
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From jbpoline at gmail.com  Thu Sep 14 10:00:04 2023
From: jbpoline at gmail.com (JB Poline)
Date: Thu, 14 Sep 2023 10:00:04 -0400
Subject: [Neuroimaging] [DIPY] DIPY receives new multimillion dollar NIH
 grant (4 years)
In-Reply-To: <CAKdyFJsGPTYBJkZ1_dp9NhDZXpzy5ogy3LhPWgWWEtP8AAZN0A@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
 <CAKdyFJsGPTYBJkZ1_dp9NhDZXpzy5ogy3LhPWgWWEtP8AAZN0A@mail.gmail.com>
Message-ID: <CALMaa82-Q2WRMT-MpLscG8Z5XbHuc6ZphNAMhHcRy4F3dPF4tg@mail.gmail.com>

awesome news !
JB

On Thu, Sep 14, 2023 at 9:44?AM Andrada Ianus <
andrada.ianus at neuro.fchampalimaud.org> wrote:

> Congratulations! This is fantastic news!
>
> Andrada
>
> On Thu, Sep 14, 2023 at 1:35?AM Eleftherios Garyfallidis <
> garyfallidis at gmail.com> wrote:
>
>> Dear all,
>>
>> I am happy to announce that I received a new grant with co-PIs Rokem,
>> Harezlak and Tang to continue developing the DIPY software platform.
>>
>> In summary, we are going to:
>>
>> a) Introduce new pre-processing methods (all sorts of new approaches -
>> many surprises there) !
>> b) Introduce new bundle analytics methods (tractometry + shape +
>> connectivity) !
>> c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud)
>> !
>> d) Validate tractography with human and non-human primate data !
>>
>> More information about the grant can be found here:
>>
>> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068
>>
>> Thank you all for your encouragement and especially those from our
>> community that provided
>> letters of support.
>>
>> Best regards,
>> Eleftherios Garyfallidis, PhD
>> Director of Graduate Studies
>> Associate Professor
>> Intelligent Systems Engineering
>> Indiana University
>> Luddy Hall 700 N Woodlawn
>> Bloomington, IN 47408
>> GRG <https://grg.luddy.indiana.edu/> | DIPY <http://dipy.org/> | FURY
>> <https://fury.gl/>
>>
>>
>>
>>
>>
>>
>> _______________________________________________
>> DIPY mailing list -- dipy at python.org
>> To unsubscribe send an email to dipy-leave at python.org
>> https://mail.python.org/mailman3/lists/dipy.python.org/
>> Member address: andrada.ianus at neuro.fchampalimaud.org
>>
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
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From wuzhengwang1984 at gmail.com  Thu Sep 14 10:07:52 2023
From: wuzhengwang1984 at gmail.com (Zhengwang Wu)
Date: Thu, 14 Sep 2023 10:07:52 -0400
Subject: [Neuroimaging] [DIPY] DIPY receives new multimillion dollar NIH
 grant (4 years)
In-Reply-To: <acf35ad9c0a143fcaead8df9b65f5249@epfl.ch>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>,
 <acf35ad9c0a143fcaead8df9b65f5249@epfl.ch>
Message-ID: <A3BB0F88-67E2-4911-B4F3-4AE3957CE75E@hxcore.ol>

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From girard.gabriel at gmail.com  Thu Sep 14 11:39:13 2023
From: girard.gabriel at gmail.com (Gabriel Girard)
Date: Thu, 14 Sep 2023 11:39:13 -0400
Subject: [Neuroimaging] DIPY receives new multimillion dollar NIH grant
 (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <CAOdnmQsoTLG+38Ps9LKWFOQVgkTN9zj9a7mKTmY8rn0YtF1M1g@mail.gmail.com>

Fantastic!

Cheers,
Gab

On Wed, Sep 13, 2023 at 8:33?PM Eleftherios Garyfallidis <
garyfallidis at gmail.com> wrote:

> Dear all,
>
> I am happy to announce that I received a new grant with co-PIs Rokem,
> Harezlak and Tang to continue developing the DIPY software platform.
>
> In summary, we are going to:
>
> a) Introduce new pre-processing methods (all sorts of new approaches -
> many surprises there) !
> b) Introduce new bundle analytics methods (tractometry + shape +
> connectivity) !
> c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
> d) Validate tractography with human and non-human primate data !
>
> More information about the grant can be found here:
>
> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068
>
> Thank you all for your encouragement and especially those from our
> community that provided
> letters of support.
>
> Best regards,
> Eleftherios Garyfallidis, PhD
> Director of Graduate Studies
> Associate Professor
> Intelligent Systems Engineering
> Indiana University
> Luddy Hall 700 N Woodlawn
> Bloomington, IN 47408
> GRG <https://grg.luddy.indiana.edu/> | DIPY <http://dipy.org/> | FURY
> <https://fury.gl/>
>
>
>
>
>
>
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
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From smaharj at iu.edu  Thu Sep 14 11:11:16 2023
From: smaharj at iu.edu (Maharjan, Surendra)
Date: Thu, 14 Sep 2023 15:11:16 +0000
Subject: [Neuroimaging] [External] [DIPY] Re: DIPY receives new
 multimillion dollar NIH grant (4 years)
In-Reply-To: <5885927A-9A52-4F5B-9179-420C69FDE72F@unl.edu>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
 <5885927A-9A52-4F5B-9179-420C69FDE72F@unl.edu>
Message-ID: <MN2PR08MB63493ED48AB6A0EA5BA2B303D2F7A@MN2PR08MB6349.namprd08.prod.outlook.com>

This is awesome. Cheers. ?

Get Outlook for iOS<https://aka.ms/o0ukef>
________________________________
From: Yingying Wang <yingying.wang at unl.edu>
Sent: Wednesday, September 13, 2023 10:18:26 PM
To: Eleftherios Garyfallidis <garyfallidis at gmail.com>
Cc: dipy at python.org <dipy at python.org>; Neuroimaging analysis in Python <neuroimaging at python.org>; Harezlak, Jaroslaw <harezlak at iu.edu>; Ariel Rokem <arokem at uw.edu>; Tang, Wei <wt1 at iu.edu>; K. Serge <skab12 at gmail.com>
Subject: [External] [DIPY] Re: DIPY receives new multimillion dollar NIH grant (4 years)

You don't often get email from yingying.wang at unl.edu. Learn why this is important<https://aka.ms/LearnAboutSenderIdentification>

This message was sent from a non-IU address. Please exercise caution when clicking links or opening attachments from external sources.


?Awesome! Congratulations ?


Best regards,




Yingying Wang (she/her)


Associate Professor


University of Nebraska?Lincoln


Special Education and Communication Disorders


Center for Brain, Biology and Behavior


Neuroimaging for Language, Literacy and Learning<http://nl3.unl.edu/>


Office: +1(402)-472-0106

(Please excuse any typos as it was sent from my mobile device)



On Sep 13, 2023, at 7:35 PM, Eleftherios Garyfallidis <garyfallidis at gmail.com> wrote:

?
Non-NU Email
________________________________
Dear all,

I am happy to announce that I received a new grant with co-PIs Rokem, Harezlak and Tang to continue developing the DIPY software platform.

In summary, we are going to:

a) Introduce new pre-processing methods (all sorts of new approaches - many surprises there) !
b) Introduce new bundle analytics methods (tractometry + shape + connectivity) !
c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
d) Validate tractography with human and non-human primate data !

More information about the grant can be found here:
https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068<https://urldefense.com/v3/__https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUV6HnYumg$>

Thank you all for your encouragement and especially those from our community that provided
letters of support.

Best regards,
Eleftherios Garyfallidis, PhD
Director of Graduate Studies
Associate Professor
Intelligent Systems Engineering
Indiana University
Luddy Hall 700 N Woodlawn
Bloomington, IN 47408
GRG<https://urldefense.com/v3/__https://grg.luddy.indiana.edu/__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUWGKRtofg$> | DIPY<https://urldefense.com/v3/__http://dipy.org/__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUU4ZwjsSw$> | FURY<https://urldefense.com/v3/__https://fury.gl/__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUVIKLJJaA$>






_______________________________________________
DIPY mailing list -- dipy at python.org
To unsubscribe send an email to dipy-leave at python.org
https://urldefense.com/v3/__https://mail.python.org/mailman3/lists/dipy.python.org/__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUU01Y6i9Q$
Member address: yingying.wang at unl.edu
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From ainapuce at indiana.edu  Thu Sep 14 12:54:27 2023
From: ainapuce at indiana.edu (Puce, Aina)
Date: Thu, 14 Sep 2023 16:54:27 +0000
Subject: [Neuroimaging] [External] [DIPY] Re: DIPY receives new
 multimillion dollar NIH grant (4 years)
In-Reply-To: <CALMaa82-Q2WRMT-MpLscG8Z5XbHuc6ZphNAMhHcRy4F3dPF4tg@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
 <CAKdyFJsGPTYBJkZ1_dp9NhDZXpzy5ogy3LhPWgWWEtP8AAZN0A@mail.gmail.com>
 <CALMaa82-Q2WRMT-MpLscG8Z5XbHuc6ZphNAMhHcRy4F3dPF4tg@mail.gmail.com>
Message-ID: <SN4PR0801MB782445A7E095597D48004548C0F7A@SN4PR0801MB7824.namprd08.prod.outlook.com>

Monumental news Elef! Congratulations!
Aina


Aina Puce, Ph.D.   (she/her)
Eleanor Cox Riggs Professor of Social Justice & Ethics
Psychological & Brain Sciences,
Programs in Neuroscience & Cognitive Science
Fellow, IU Global Classroom, 2021-2022
Indiana University, Bloomington IN 47405 USA

Fellow, Organization for Human Brain Mapping

email: ainapuce at iu.edu
Mastodon: @socneuronerd at mstdn.social
Photographic website: https://ainapuce.myportfolio.com
Wordpress: https://neurowanderer.blog/
[cid:b43ec6c5-2ef4-4223-8f8d-16e9105331f6]
bit.ly/MEG-EEGP<https://global.oup.com/academic/product/meg---eeg-primer-9780197542187>
________________________________
From: JB Poline <jbpoline at gmail.com>
Sent: Thursday, September 14, 2023 10:00 AM
To: Neuroimaging analysis in Python <neuroimaging at python.org>
Cc: Eleftherios Garyfallidis <garyfallidis at gmail.com>; dipy at python.org <dipy at python.org>; Harezlak, Jaroslaw <harezlak at iu.edu>; Ariel Rokem <arokem at uw.edu>; Tang, Wei <wt1 at iu.edu>; K. Serge <skab12 at gmail.com>
Subject: [External] [DIPY] Re: [Neuroimaging] DIPY receives new multimillion dollar NIH grant (4 years)


This message was sent from a non-IU address. Please exercise caution when clicking links or opening attachments from external sources.


awesome news !
JB

On Thu, Sep 14, 2023 at 9:44?AM Andrada Ianus <andrada.ianus at neuro.fchampalimaud.org<mailto:andrada.ianus at neuro.fchampalimaud.org>> wrote:
Congratulations! This is fantastic news!

Andrada

On Thu, Sep 14, 2023 at 1:35?AM Eleftherios Garyfallidis <garyfallidis at gmail.com<mailto:garyfallidis at gmail.com>> wrote:
Dear all,

I am happy to announce that I received a new grant with co-PIs Rokem, Harezlak and Tang to continue developing the DIPY software platform.

In summary, we are going to:

a) Introduce new pre-processing methods (all sorts of new approaches - many surprises there) !
b) Introduce new bundle analytics methods (tractometry + shape + connectivity) !
c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
d) Validate tractography with human and non-human primate data !

More information about the grant can be found here:
https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068

Thank you all for your encouragement and especially those from our community that provided
letters of support.

Best regards,
Eleftherios Garyfallidis, PhD
Director of Graduate Studies
Associate Professor
Intelligent Systems Engineering
Indiana University
Luddy Hall 700 N Woodlawn
Bloomington, IN 47408
GRG<https://grg.luddy.indiana.edu/> | DIPY<http://dipy.org/> | FURY<https://fury.gl/>






_______________________________________________
DIPY mailing list -- dipy at python.org<mailto:dipy at python.org>
To unsubscribe send an email to dipy-leave at python.org<mailto:dipy-leave at python.org>
https://mail.python.org/mailman3/lists/dipy.python.org/
Member address: andrada.ianus at neuro.fchampalimaud.org<mailto:andrada.ianus at neuro.fchampalimaud.org>
_______________________________________________
Neuroimaging mailing list
Neuroimaging at python.org<mailto:Neuroimaging at python.org>
https://mail.python.org/mailman/listinfo/neuroimaging
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From mo.aggour at gmail.com  Thu Sep 14 13:18:19 2023
From: mo.aggour at gmail.com (Mohamed Abouagour)
Date: Thu, 14 Sep 2023 20:18:19 +0300
Subject: [Neuroimaging] [DIPY] Re: [External] Re: DIPY receives new
 multimillion dollar NIH grant (4 years)
In-Reply-To: <MN2PR08MB63493ED48AB6A0EA5BA2B303D2F7A@MN2PR08MB6349.namprd08.prod.outlook.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
 <5885927A-9A52-4F5B-9179-420C69FDE72F@unl.edu>
 <MN2PR08MB63493ED48AB6A0EA5BA2B303D2F7A@MN2PR08MB6349.namprd08.prod.outlook.com>
Message-ID: <CAJe3zqH3XdFsUAjM-dzhVt-6Z7KvkP10azq-taCwWmNdO7irBw@mail.gmail.com>

Congrats! Exciting times ahead!


On Thu, Sep 14, 2023 at 6:26?PM Maharjan, Surendra <smaharj at iu.edu> wrote:

> This is awesome. Cheers. ?
>
> Get Outlook for iOS <https://aka.ms/o0ukef>
> ------------------------------
> *From:* Yingying Wang <yingying.wang at unl.edu>
> *Sent:* Wednesday, September 13, 2023 10:18:26 PM
> *To:* Eleftherios Garyfallidis <garyfallidis at gmail.com>
> *Cc:* dipy at python.org <dipy at python.org>; Neuroimaging analysis in Python <
> neuroimaging at python.org>; Harezlak, Jaroslaw <harezlak at iu.edu>; Ariel
> Rokem <arokem at uw.edu>; Tang, Wei <wt1 at iu.edu>; K. Serge <skab12 at gmail.com>
> *Subject:* [External] [DIPY] Re: DIPY receives new multimillion dollar
> NIH grant (4 years)
>
> You don't often get email from yingying.wang at unl.edu. Learn why this is
> important <https://aka.ms/LearnAboutSenderIdentification>
>
> This message was sent from a non-IU address. Please exercise caution when
> clicking links or opening attachments from external sources.
>
> ?Awesome! Congratulations ?
>
> Best regards,
>
>
>
>
> *Yingying Wang (she/her)*
>
>
> *Associate Professor*
>
>
> University of Nebraska?Lincoln
>
>
> Special Education and Communication Disorders
>
>
> Center for Brain, Biology and Behavior
>
>
> Neuroimaging for Language, Literacy and Learning <http://nl3.unl.edu/>
>
>
> Office: +1(402)-472-0106
>
> *(Please excuse any typos as it was sent from my mobile device)*
>
>
>
> On Sep 13, 2023, at 7:35 PM, Eleftherios Garyfallidis <
> garyfallidis at gmail.com> wrote:
>
> ?
> Non-NU Email
> ------------------------------
> Dear all,
>
> I am happy to announce that I received a new grant with co-PIs Rokem,
> Harezlak and Tang to continue developing the DIPY software platform.
>
> In summary, we are going to:
>
> a) Introduce new pre-processing methods (all sorts of new approaches -
> many surprises there) !
> b) Introduce new bundle analytics methods (tractometry + shape +
> connectivity) !
> c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
> d) Validate tractography with human and non-human primate data !
>
> More information about the grant can be found here:
>
> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068
> <https://urldefense.com/v3/__https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUV6HnYumg$>
>
> Thank you all for your encouragement and especially those from our
> community that provided
> letters of support.
>
> Best regards,
> Eleftherios Garyfallidis, PhD
> Director of Graduate Studies
> Associate Professor
> Intelligent Systems Engineering
> Indiana University
> Luddy Hall 700 N Woodlawn
> Bloomington, IN 47408
> GRG
> <https://urldefense.com/v3/__https://grg.luddy.indiana.edu/__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUWGKRtofg$>
> | DIPY
> <https://urldefense.com/v3/__http://dipy.org/__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUU4ZwjsSw$>
> | FURY
> <https://urldefense.com/v3/__https://fury.gl/__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUVIKLJJaA$>
>
>
>
>
>
>
> _______________________________________________
> DIPY mailing list -- dipy at python.org
> To unsubscribe send an email to dipy-leave at python.org
>
> https://urldefense.com/v3/__https://mail.python.org/mailman3/lists/dipy.python.org/__;!!PvXuogZ4sRB2p-tU!H1b3bAsBeP643B6W6d-wJtVV7iJlR1suqLobRp87-yLH3oVIDMHw1lFn3YNl3JVRawe_jeKoEEowxkg9UUU01Y6i9Q$
> Member address: yingying.wang at unl.edu
>
> _______________________________________________
> DIPY mailing list -- dipy at python.org
> To unsubscribe send an email to dipy-leave at python.org
> https://mail.python.org/mailman3/lists/dipy.python.org/
> Member address: mo.aggour at gmail.com
>
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From jacques.stout at duke.edu  Thu Sep 14 13:46:39 2023
From: jacques.stout at duke.edu (Jacques Stout, Ph.D.)
Date: Thu, 14 Sep 2023 17:46:39 +0000
Subject: [Neuroimaging] [DIPY] DIPY receives new multimillion dollar NIH
 grant (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <SA1PR05MB936562B8BD9944F68C29337B82F7A@SA1PR05MB9365.namprd05.prod.outlook.com>

Great to hear! Looking forward to what the future entails!

Jacques Stout, PhD
Postdoctoral Researcher, Department of Radiology, Neurology, BIAC

Duke University Medical Center

984-329-4929

He/His
________________________________
From: Eleftherios Garyfallidis <garyfallidis at gmail.com>
Sent: Wednesday, September 13, 2023 8:33 PM
To: dipy at python.org <dipy at python.org>; Neuroimaging analysis in Python <neuroimaging at python.org>; Harezlak, Jaroslaw <harezlak at iu.edu>; Ariel Rokem <arokem at uw.edu>; Tang, Wei <wt1 at iu.edu>; K. Serge <skab12 at gmail.com>
Subject: [DIPY] DIPY receives new multimillion dollar NIH grant (4 years)

Dear all,

I am happy to announce that I received a new grant with co-PIs Rokem, Harezlak and Tang to continue developing the DIPY software platform.

In summary, we are going to:

a) Introduce new pre-processing methods (all sorts of new approaches - many surprises there) !
b) Introduce new bundle analytics methods (tractometry + shape + connectivity) !
c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
d) Validate tractography with human and non-human primate data !

More information about the grant can be found here:
https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068<https://urldefense.com/v3/__https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068__;!!OToaGQ!t7EbPYwN3FPD2cqAjpsDsMxcKH9TUjILukaqmDtHMrQqa_2JhOGt9aST51Mr7slif5AO1LPXB6JKdkvs1icQ__d34fk$>

Thank you all for your encouragement and especially those from our community that provided
letters of support.

Best regards,
Eleftherios Garyfallidis, PhD
Director of Graduate Studies
Associate Professor
Intelligent Systems Engineering
Indiana University
Luddy Hall 700 N Woodlawn
Bloomington, IN 47408
GRG<https://urldefense.com/v3/__https://grg.luddy.indiana.edu/__;!!OToaGQ!t7EbPYwN3FPD2cqAjpsDsMxcKH9TUjILukaqmDtHMrQqa_2JhOGt9aST51Mr7slif5AO1LPXB6JKdkvs1icQVvGT4us$> | DIPY<https://urldefense.com/v3/__http://dipy.org/__;!!OToaGQ!t7EbPYwN3FPD2cqAjpsDsMxcKH9TUjILukaqmDtHMrQqa_2JhOGt9aST51Mr7slif5AO1LPXB6JKdkvs1icQP4U4Vqk$> | FURY<https://urldefense.com/v3/__https://fury.gl/__;!!OToaGQ!t7EbPYwN3FPD2cqAjpsDsMxcKH9TUjILukaqmDtHMrQqa_2JhOGt9aST51Mr7slif5AO1LPXB6JKdkvs1icQRpomNak$>






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From alram at cimat.mx  Thu Sep 14 15:56:06 2023
From: alram at cimat.mx (=?UTF-8?Q?Alonso_Ram=C3=ADrez?=)
Date: Thu, 14 Sep 2023 21:56:06 +0200
Subject: [Neuroimaging] [DIPY] Re: DIPY receives new multimillion dollar
 NIH grant (4 years)
In-Reply-To: <SA1PR05MB936562B8BD9944F68C29337B82F7A@SA1PR05MB9365.namprd05.prod.outlook.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
 <SA1PR05MB936562B8BD9944F68C29337B82F7A@SA1PR05MB9365.namprd05.prod.outlook.com>
Message-ID: <CAGeX-nzpW2-bChfpwTUSUtS=ucANGW7pfCqJ7vaOu-e1U14BNA@mail.gmail.com>

Congratulations, my friends!
This is a great achievement. Good job!

All the best!!

Alonso Ram?rez M.
Centro de Investigaci?n en Matem?ticas A.C.
Tel. +52 (473) 73 271 55
Off. I106, Ext. 4494


El jue, 14 sept 2023 a las 19:59, Jacques Stout, Ph.D. (<
jacques.stout at duke.edu>) escribi?:

> Great to hear! Looking forward to what the future entails!
>
> Jacques Stout, PhD
> Postdoctoral Researcher, Department of Radiology, Neurology, BIAC
>
> Duke University Medical Center
>
> 984-329-4929
> He/His
> ------------------------------
> *From:* Eleftherios Garyfallidis <garyfallidis at gmail.com>
> *Sent:* Wednesday, September 13, 2023 8:33 PM
> *To:* dipy at python.org <dipy at python.org>; Neuroimaging analysis in Python <
> neuroimaging at python.org>; Harezlak, Jaroslaw <harezlak at iu.edu>; Ariel
> Rokem <arokem at uw.edu>; Tang, Wei <wt1 at iu.edu>; K. Serge <skab12 at gmail.com>
> *Subject:* [DIPY] DIPY receives new multimillion dollar NIH grant (4
> years)
>
> Dear all,
>
> I am happy to announce that I received a new grant with co-PIs Rokem,
> Harezlak and Tang to continue developing the DIPY software platform.
>
> In summary, we are going to:
>
> a) Introduce new pre-processing methods (all sorts of new approaches -
> many surprises there) !
> b) Introduce new bundle analytics methods (tractometry + shape +
> connectivity) !
> c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
> d) Validate tractography with human and non-human primate data !
>
> More information about the grant can be found here:
>
> https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068
> <https://urldefense.com/v3/__https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068__;!!OToaGQ!t7EbPYwN3FPD2cqAjpsDsMxcKH9TUjILukaqmDtHMrQqa_2JhOGt9aST51Mr7slif5AO1LPXB6JKdkvs1icQ__d34fk$>
>
> Thank you all for your encouragement and especially those from our
> community that provided
> letters of support.
>
> Best regards,
> Eleftherios Garyfallidis, PhD
> Director of Graduate Studies
> Associate Professor
> Intelligent Systems Engineering
> Indiana University
> Luddy Hall 700 N Woodlawn
> Bloomington, IN 47408
> GRG
> <https://urldefense.com/v3/__https://grg.luddy.indiana.edu/__;!!OToaGQ!t7EbPYwN3FPD2cqAjpsDsMxcKH9TUjILukaqmDtHMrQqa_2JhOGt9aST51Mr7slif5AO1LPXB6JKdkvs1icQVvGT4us$>
> | DIPY
> <https://urldefense.com/v3/__http://dipy.org/__;!!OToaGQ!t7EbPYwN3FPD2cqAjpsDsMxcKH9TUjILukaqmDtHMrQqa_2JhOGt9aST51Mr7slif5AO1LPXB6JKdkvs1icQP4U4Vqk$>
> | FURY
> <https://urldefense.com/v3/__https://fury.gl/__;!!OToaGQ!t7EbPYwN3FPD2cqAjpsDsMxcKH9TUjILukaqmDtHMrQqa_2JhOGt9aST51Mr7slif5AO1LPXB6JKdkvs1icQRpomNak$>
>
>
>
>
>
>
> _______________________________________________
> DIPY mailing list -- dipy at python.org
> To unsubscribe send an email to dipy-leave at python.org
> https://mail.python.org/mailman3/lists/dipy.python.org/
> Member address: alram at cimat.mx
>

-- 


	
	



*La informaci?n y sus documentos adjuntos son
susceptibles de 
estar clasificados en t?rminos de la Ley General de Protecci?n
de Datos 
Personales en Posesi?n de Sujetos Obligados (LGPDPPSO). Si usted ha
recibido este mensaje por error, por favor notifique al remitente 
respondiendo
al correo, y elimine el mensaje original, as? como sus 
documentos adjuntos como
una medida de seguridad de car?cter 
administrativo.*




*This
email and its attachments are confidential and 
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please notify us immediately, delete
the email message, do not copy it, 
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From pitsikelena at gmail.com  Fri Sep 15 07:05:41 2023
From: pitsikelena at gmail.com (=?UTF-8?B?0JXQu9C10L3QsCDQn9C40YbQuNC6?=)
Date: Fri, 15 Sep 2023 13:05:41 +0200
Subject: [Neuroimaging] [nipype] SPM functions error
Message-ID: <CAJsLw5i2=+H0FShCzw8yGzKb_8Qgq4my2=C=SmPZVKRm7qe1CA@mail.gmail.com>

Dear nipype community,


I have a problem with nipype and I'm unable to find a working solution.
Maybe you'll be able to help me?


I use Windows 10 Home 64-bit, Python 3.11, Matlab R2022a and SPM12 7771. I
run my scripts in Jupyter lab. It seems like I can't use any SPM functions
in nipype. When I type:


from nipype.interfaces import spm

spm.SPMCommand().version


The matlab terminal window runs and closes quickly, and the output in
jupyter is "ValueError: substring not found". I attached the full text of
error in spm_version_error.txt. This happens with all SPM functions I try.


I've tried to used standalone version of SPM12 with MCR and executing the
following:


from nipype.interfaces import spm

matlab_cmd = '/path/to/run_spm12.sh /path/to/Compiler_Runtime/v713/ script'

spm.SPMCommand.set_mlab_paths(matlab_cmd=matlab_cmd, use_mcr=True)


This command causes the same error. I also tried to add
os.environ['FORCE_SPMMCR'] = "True" or os.environ['FORCE_SPMMCR'] = '1',
which also didn't have any effect. I've additionally tried to give up on
Windows and try this on Mac with Python 3.8, but the error is still there.

I hoped that you might help me with this.

All the best,
-- 
Elena Pitsik
researcher, Baltic Center for Artificial Intelligence and Neurotechnology,
Immanuel Kant Baltic Federal University.
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---------------------------------------------------------------------------
ValueError                                Traceback (most recent call last)
File c:\myenv\Lib\site-packages\nipype\utils\spm_docs.py:49, in _strip_header(doc)
     48 try:
---> 49     index = doc.index(hdr)
     50 except ValueError as e:

ValueError: substring not found

The above exception was the direct cause of the following exception:

OSError                                   Traceback (most recent call last)
Cell In[2], line 2
      1 from nipype.interfaces import spm
----> 2 spm.SPMCommand().version

File c:\myenv\Lib\site-packages\nipype\interfaces\spm\base.py:309, in SPMCommand.__init__(self, **inputs)
    308 def __init__(self, **inputs):
--> 309     super(SPMCommand, self).__init__(**inputs)
    310     self.inputs.on_trait_change(
    311         self._matlab_cmd_update, ["matlab_cmd", "mfile", "paths", "use_mcr"]
    312     )
    313     self._find_mlab_cmd_defaults()

File c:\myenv\Lib\site-packages\nipype\interfaces\base\core.py:197, in BaseInterface.__init__(self, from_file, resource_monitor, ignore_exception, **inputs)
    194 # Create input spec, disable any defaults that are unavailable due to
    195 # version, and then apply the inputs that were passed.
    196 self.inputs = self.input_spec()
--> 197 unavailable_traits = self._check_version_requirements(
    198     self.inputs, permissive=True
    199 )
    200 if unavailable_traits:
    201     self.inputs.trait_set(**{k: Undefined for k in unavailable_traits})

File c:\myenv\Lib\site-packages\nipype\interfaces\base\core.py:295, in BaseInterface._check_version_requirements(self, trait_object, permissive)
    292 check = dict(min_ver=lambda t: t is not None)
    293 names = trait_object.trait_names(**check)
--> 295 if names and self.version:
    296     version = LooseVersion(str(self.version))
    297     for name in names:

File c:\myenv\Lib\site-packages\nipype\interfaces\spm\base.py:357, in SPMCommand.version(self)
    355 @property
    356 def version(self):
--> 357     info_dict = Info.getinfo(
    358         matlab_cmd=self.inputs.matlab_cmd,
    359         paths=self.inputs.paths,
    360         use_mcr=self.inputs.use_mcr,
    361     )
    362     if info_dict:
    363         return "%s.%s" % (info_dict["name"].split("SPM")[-1], info_dict["release"])

File c:\myenv\Lib\site-packages\nipype\interfaces\spm\base.py:238, in Info.getinfo(klass, matlab_cmd, paths, use_mcr)
    235     klass._paths = paths
    236     return None
--> 238 out = sd._strip_header(out.runtime.stdout)
    239 out_dict = {}
    240 for part in out.split("|"):

File c:\myenv\Lib\site-packages\nipype\utils\spm_docs.py:51, in _strip_header(doc)
     49     index = doc.index(hdr)
     50 except ValueError as e:
---> 51     raise IOError("This docstring was not generated by Nipype!\n") from e
     53 index += len(hdr)
     54 index += 1

OSError: This docstring was not generated by Nipype!

From hjara at bu.edu  Thu Sep 14 18:59:59 2023
From: hjara at bu.edu (Jara, Hernan)
Date: Thu, 14 Sep 2023 22:59:59 +0000
Subject: [Neuroimaging] [DIPY] DIPY receives new multimillion dollar NIH
 grant (4 years)
In-Reply-To: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
References: <CAN6JmWP8wMhkm_TU6sujUkWpoqjQXj__V1fnffqnx3aJ4x=N5g@mail.gmail.com>
Message-ID: <BL1PR03MB6117FE270249D579D97D799FC7F7A@BL1PR03MB6117.namprd03.prod.outlook.com>

Sincere congratulations a Eleftherios and the DIPY team. The outstanding work will continue and be reenergized!
Best wishes of success,
Hernan

Hernan Jara, PhD
Professor, Department of Radiology
Chobanian and Avedisian School of Medicine
Boston University
Boston, MA 02118



From: Eleftherios Garyfallidis <garyfallidis at gmail.com>
Sent: Wednesday, September 13, 2023 8:33 PM
To: dipy at python.org; Neuroimaging analysis in Python <neuroimaging at python.org>; Harezlak, Jaroslaw <harezlak at iu.edu>; Ariel Rokem <arokem at uw.edu>; Tang, Wei <wt1 at iu.edu>; K. Serge <skab12 at gmail.com>
Subject: [DIPY] DIPY receives new multimillion dollar NIH grant (4 years)

Dear all,

I am happy to announce that I received a new grant with co-PIs Rokem, Harezlak and Tang to continue developing the DIPY software platform.

In summary, we are going to:

a) Introduce new pre-processing methods (all sorts of new approaches - many surprises there) !
b) Introduce new bundle analytics methods (tractometry + shape + connectivity) !
c) Optimize DIPY for speed (CPU/GPU) and memory usage (desktop and cloud) !
d) Validate tractography with human and non-human primate data !

More information about the grant can be found here:
https://reporter.nih.gov/search/9DOj7khrykWD_8ZoyPv7cw/project-details/10735068

Thank you all for your encouragement and especially those from our community that provided
letters of support.

Best regards,
Eleftherios Garyfallidis, PhD
Director of Graduate Studies
Associate Professor
Intelligent Systems Engineering
Indiana University
Luddy Hall 700 N Woodlawn
Bloomington, IN 47408
GRG<https://grg.luddy.indiana.edu/> | DIPY<http://dipy.org/> | FURY<https://fury.gl/>






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From rankamansi29 at gmail.com  Mon Sep 18 16:11:38 2023
From: rankamansi29 at gmail.com (Mansi Ranka)
Date: Mon, 18 Sep 2023 16:11:38 -0400
Subject: [Neuroimaging] Join us for the 2024 DIPY Workshop! - March 11-15
 Online Edition!
Message-ID: <CAOTTyZh5E6H_ognUP4e2hnYYwCjdQcXqBy-cBPui3wKAWGqOuA@mail.gmail.com>

Dear All,

We are excited to invite you to our upcoming DIPY workshop that will take
place from March 11 to March 15, 2024, where we promise you will be having
an enriching experience diving in the world of advanced imaging technology
and data analytics.

This year our distinguished keynotes are Prof. Paul Thompson (USC), Prof.
Gary Zhang (UCL), and Prof. Markus Nilsson (Lund) (see attachment). In
addition, Prof. Garyfallidis, Rokem, Tax, Grusso, Harezlak, Esteban, and
others will be talking about a variety of techniques involving the process
of medical imaging including but not limited to Preprocessing,
Reconstructing, Denoising, Microstructure modeling, Knowledge Distillation,
Tractography, and Visualization.

The DIPY workshop aims to train the next generation of scientists, doctors,
and engineers who will shape the future of imaging. Your participation will
greatly contribute to the success of the event.

Please note that as it is customary for the DIPY workshop:


   -

   Sessions for guided practice (hands-on) will be available every day.
   -

   Attendees can present their work or problems of interest.
   -

   We provide Certificates of Attendance.


To register for the workshop, or if you have any questions please visit our
website here <https://dipy.org/workshops/dipy-workshop-2024> or feel free
to reach out to our support team here <dipy at python.org>. We look forward to
your participation and look forward to exploring the exciting work of
imaging science together.

Register Now!!! <https://dipy.org/workshops/dipy-workshop-2024#Registration>

On behalf of the DIPY team,

Mansi Ranka

Research Assistant

Intelligent Systems Engineering

Indiana University

Luddy Hall 700 N Woodlawn

Bloomington, IN 47408

GRG <https://grg.luddy.indiana.edu/> | DIPY <http://dipy.org/> | FURY
<https://fury.gl/>

P.s. Please also note that the Platinum option (our best option) provides
support well beyond March 15.

P.s.2. Discounts will be provided again for students or faculty that live
and work in harsh economic environments. Please ask for more information at
dipy at python.org.
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From jessica.lebenberg at inserm.fr  Tue Sep 19 04:08:32 2023
From: jessica.lebenberg at inserm.fr (JESSICA LEBENBERG)
Date: Tue, 19 Sep 2023 08:08:32 +0000
Subject: [Neuroimaging] install Nipype
Message-ID: <3c33132cb5d64d3ead76ddcdbf1a781e@inserm.fr>

Hi,

I'm installing my new laptop (Mac OS Ventura, M2 ship).

but I cannot install Nipype with conda, nor pip. It seems I succeeded with docker but I do not understand how use it within python (import Nipype did not work).

I have a look on https://repo.anaconda.com/pkgs/main/ and I cannot find anymore Nipype.

Nipype is not used anymore ? is there another package ?

thanks in advance,

jessica


Jessica LEBENBERG, PhD
Senior Research Engineer,
Centre NeuroVasculaire Translationnel (CNVT)
Direction de la Recherche Clinique et de l?Innovation (DRCI) de l?AP-HP
H?pital Lariboisi?re
2 rue Ambroise Par?, 75010 PARIS

INSERM U1141 NeuroDiderot
Bat. E. Bingen, H?pital Robert Debr?
48, boulevard S?rurier, 75019 Paris
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From pakitochus at gmail.com  Tue Sep 26 16:14:12 2023
From: pakitochus at gmail.com (Personal - GMAIL)
Date: Tue, 26 Sep 2023 22:14:12 +0200
Subject: [Neuroimaging] 2 open Ph.D. positions in Machine Learning ofr
 Neuroimaging
Message-ID: <a9860210-0e6b-b859-3a3e-2d82021c3426@gmail.com>

**

*2 open Ph.D. positions in Machine Learning ofr Neuroimaging*

*

SiPBA (Signal Processing and Biomedical Applications) Research 
GroupWebsite:https://sipba.ugr.es/ <https://sipba.ugr.es/>

The SiPBA Research Group is pleased to announce 2 Ph.D. positions in the 
field of Brain Imaging. These scholarships are associated with two 
innovative research projects: "Latent Variable Models for Determining 
the Onset of Neurodegenerative Symptoms (LATiDOS)" and "Statistical 
Signal Processing Tools to Validate Deep Learning Models in Neuroscience 
(VAL-DEEP-SCIENCE)." The selected candidates will have the opportunity 
to pursue a Ph.D. within a maximum period of 48 months.

About the SiPBA Research Group:

The SiPBA Research Group, has extensive experience in developing 
research projects in the field of neuroimage. We use artificial 
intelligence techniques and signal processing to address critical 
challenges related to the detection and diagnosis of neurodegenerative 
diseases such as Alzheimer's, Autism, and Parkinson's. Our mission is to 
contribute to scientific advancement through the application of 
innovative solutions in neuroimaging.

Candidate Requirements:

We are seeking highly motivated individuals seeking a scientific career 
in the field of neuroimage. It is a requisite to hold a master?s degree. 
Ideal candidates should meet the following requirements:

  *

    A degree in telecommunications engineering, computer science,
    statistics or related disciplines.

  *

    Expertise in programming (python, matlab and/or R).

  *

    A strong interest and commitment to conducting cutting-edge research
    in the field of neuroimage and brain image processing.

  *

    The ability to work collaboratively in a multidisciplinary environment.

  *

    Exceptional communication skills, both written and verbal.

Contact: illan at ugr.es

SiPBA Research Group is an equal opportunity employer. We value and 
encourage diversity in our research and projects, and we welcome 
candidates from all backgrounds to apply.



*
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