[Neuroimaging] [ANN] MNE 1.3 Release

Fri Jan 6 12:14:53 EST 2023

Congrats ! B

Le 06/01/2023 à 18:12, Alexandre Gramfort a écrit :
>
> Hello everyone,
>
>
> Just before xmas we released MNE-Python 1.3! 🎉 🎁 🎅
>
> Please find a detailed list of changes and contributors below.
>
> Congrts
>
> All the best,
>
>
> Your MNE Team.
>
>
>
> A few highlights
>
> ============
>
>
>  *
>
>     Mixed, cortical + discrete source spaces with fixed orientations
>     are now allowed. (#11241
>     <https://github.com/mne-tools/mne-python/issues/11241>by Jevri
>     Hanna <https://github.com/jshanna100>)
>
>  *
>
>     Add support for image_format='webp'to mne.Report
>     <https://mne.tools/stable/generated/mne.Report.html#mne.Report>when
>     using Matplotlib 3.6+, which can reduce file sizes by up to 50%
>     compared to 'png'. The new default image_format='auto'will
>     automatically use this format if it’s available on the system
>     (#11359 <https://github.com/mne-tools/mne-python/issues/11359>by
>     Eric Larson <http://larsoner.com/>)
>
>  *
>
>     Add mne.beamformer.apply_dics_tfr_epochs()
>     <https://mne.tools/stable/generated/mne.beamformer.apply_dics_tfr_epochs.html#mne.beamformer.apply_dics_tfr_epochs>to
>     apply a DICS beamformer to time-frequency resolved epochs (#11096
>     <https://github.com/mne-tools/mne-python/issues/11096>by Alex
>     Rockhill <https://github.com/alexrockhill/>)
>
>  *
>
>     Check whether head radius (estimated from channel positions) is
>     correct when reading EEGLAB data with read_raw_eeglab()
>     <https://mne.tools/stable/generated/mne.io.read_raw_eeglab.html#mne.io.read_raw_eeglab>and
>     read_epochs_eeglab()
>     <https://mne.tools/stable/generated/mne.read_epochs_eeglab.html#mne.read_epochs_eeglab>.
>     If head radius is not within likely values, warn informing about
>     possible units mismatch and the new montage_unitsargument (#11283
>     <https://github.com/mne-tools/mne-python/issues/11283>by Mikołaj
>     Magnuski <https://github.com/mmagnuski>).
>
>  *
>
>     Add support for a callable passed in combinefor
>     mne.time_frequency.AverageTFR.plot
>     <https://mne.tools/stable/generated/mne.time_frequency.AverageTFR.html#mne.time_frequency.AverageTFR.plot>and
>     mne.time_frequency.AverageTFR.plot_joint
>     <https://mne.tools/stable/generated/mne.time_frequency.AverageTFR.html#mne.time_frequency.AverageTFR.plot_joint>(#11329
>     <https://github.com/mne-tools/mne-python/issues/11329>by Mathieu
>     Scheltienne <https://github.com/mscheltienne>)
>
>
>
> Notable API changes
>
> ================
>
>
> We have changed a few things that will require you to adjust your code.
>
>
>  *
>
>     In mne.time_frequency.dpss_windows()
>     <https://mne.tools/stable/generated/mne.time_frequency.dpss_windows.html#mne.time_frequency.dpss_windows>,
>     interpolating is deprecated (nowadays SciPy’s computations are
>     fast enough for large Nwithout interpolation). This affects
>     parameters interp_fromand interp_kind. Two new parameters of the
>     underlying SciPy dpss()
>     <https://scipy.github.io/devdocs/reference/generated/scipy.signal.windows.dpss.html#scipy.signal.windows.dpss>function
>     are also exposed: sym(for choosing symmetric vs. periodic windows)
>     and norm(window normalization method). (#11293
>     <https://github.com/mne-tools/mne-python/issues/11293>by Daniel
>     McCloy <http://dan.mccloy.info/>)
>
>  *
>
>     In mne.decoding.CSP.plot_patterns()
>     <https://mne.tools/stable/generated/mne.decoding.CSP.html#mne.decoding.CSP.plot_patterns>,
>     mne.decoding.CSP.plot_filters()
>     <https://mne.tools/stable/generated/mne.decoding.CSP.html#mne.decoding.CSP.plot_filters>,
>     mne.preprocessing.ICA.plot_components()
>     <https://mne.tools/stable/generated/mne.preprocessing.ICA.html#mne.preprocessing.ICA.plot_components>,
>     and mne.viz.plot_ica_components()
>     <https://mne.tools/stable/generated/mne.viz.plot_ica_components.html#mne.viz.plot_ica_components>,
>     the parameters vminand vmaxare deprecated in favor of vlim, for
>     consistency with other topomap-plotting functions and methods
>     (#11371 <https://github.com/mne-tools/mne-python/issues/11371>by
>     Daniel McCloy <http://dan.mccloy.info/>)
>
>  *
>
>     In mne.decoding.CSP.plot_patterns()
>     <https://mne.tools/stable/generated/mne.decoding.CSP.html#mne.decoding.CSP.plot_patterns>and
>     mne.decoding.CSP.plot_filters()
>     <https://mne.tools/stable/generated/mne.decoding.CSP.html#mne.decoding.CSP.plot_filters>the
>     titleparameter is deprecated and will be removed in version 1.4
>     (#11371 <https://github.com/mne-tools/mne-python/issues/11371>by
>     Daniel McCloy <http://dan.mccloy.info/>)
>
>  *
>
>     The APIs of mne.preprocessing.ICA.plot_components()
>     <https://mne.tools/stable/generated/mne.preprocessing.ICA.html#mne.preprocessing.ICA.plot_components>and
>     mne.viz.plot_ica_components()
>     <https://mne.tools/stable/generated/mne.viz.plot_ica_components.html#mne.viz.plot_ica_components>gained
>     new parameters show_names, extrapolate, border, size, cnorm,
>     cbar_fmt, axes, nrows, ncols, for consistency with other
>     topomap-plotting functions and methods (#11371
>     <https://github.com/mne-tools/mne-python/issues/11371>by Daniel
>     McCloy <http://dan.mccloy.info/>)
>
>  *
>
>     The APIs of mne.decoding.CSP.plot_patterns()
>     <https://mne.tools/stable/generated/mne.decoding.CSP.html#mne.decoding.CSP.plot_patterns>and
>     mne.decoding.CSP.plot_filters()
>     <https://mne.tools/stable/generated/mne.decoding.CSP.html#mne.decoding.CSP.plot_filters>gained
>     new parameters extrapolate, border, cnorm, axes, nrows, ncols, for
>     consistency with other topomap-plotting functions and methods
>     (#11371 <https://github.com/mne-tools/mne-python/issues/11371>by
>     Daniel McCloy <http://dan.mccloy.info/>)
>
>
>
> Full list of API changes:
>
> https://mne.tools/stable/whats_new.html#api-changes 
> <https://mne.tools/stable/whats_new.html#api-changes>
>
>
>
> Full changelog
>
> ===========
>
>
> For a full list of improvements and API changes, see:
>
> https://mne.tools/stable/whats_new.html 
> <https://mne.tools/stable/whats_new.html>
>
>
> Find the full documentation at https://mne.tools/ 
> <https://mne.tools/stable/index.html>
>
>
> Installing the new release
>
> ===================
>
>
> Since quite a few things – including dependencies – have changed, we 
> recommend creating a new environment with a “fresh” installation. 
> Please follow the installation instructions on our website:
>
> https://mne.tools/stable/install/mne_python.html 
> <https://mne.tools/stable/install/mne_python.html>
>
>
> Feedback
>
> ========
>
>
> As usual, we welcome your bug reports, feature requests, critiques, 
> and contributions. Development takes place on GitHub. If you would 
> like to contribute, star ⭐ the project, or just take a peek at the 
> code, visit https://github.com/mne-tools/mne-python 
> <https://github.com/mne-tools/mne-python>.
>
>
> You may follow us on Twitterhttps://twitter.com/mne_news 
> <https://twitter.com/mne_news>and on mastodon 
> https://fosstodon.org/@mne <https://fosstodon.org/@mne>
>
>
> We hope you will enjoy the new features and many, many small 
> improvements we have added, and are looking forward to receiving your 
> feedback.
>
>
> The MNE-Python developers
>
>
>
> Contributors
>
> ==========
>
>
> MNE-Python is a community-driven project. We are always very happy to 
> welcome new contributors of code and documentation! 29 people 
> contributed to this release – and 13 were first-timers! Thank you all 
> so very much for your time and effort, we truly appreciate it!
>
>
> Release contributors (+ are first time contributors):
>
>
>  *
>
>     Alex Rockhill
>
>  *
>
>     Alexandre Gramfort
>
>  *
>
>     Britta Westner
>
>  *
>
>     Carlos de la Torre+
>
>  *
>
>     Daniel Hasegan+
>
>  *
>
>     Daniel McCloy
>
>  *
>
>     Dinara Issagaliyeva+
>
>  *
>
>     Enzo Altamiranda+
>
>  *
>
>     Eric Brayet+
>
>  *
>
>     Eric Larson
>
>  *
>
>     Erkka Heinila
>
>  *
>
>     Felix Klotzsche
>
>  *
>
>     Hakimeh Aslsardroud+
>
>  *
>
>     Jennifer Behnke+
>
>  *
>
>     Jevri Hanna
>
>  *
>
>     Lukas Hecker
>
>  *
>
>     Mark Alexander Henney+
>
>  *
>
>     Mathieu Scheltienne
>
>  *
>
>     Mauricio Cespedes+
>
>  *
>
>     Mikołaj Magnuski
>
>  *
>
>     Moritz Gerster
>
>  *
>
>     Omer Shubi+
>
>  *
>
>     Pavel Navratil+
>
>  *
>
>     Richard Höchenberger
>
>  *
>
>     Santeri Ruuskanen+
>
>  *
>
>     Stefan Appelhoff
>
>  *
>
>     Timon Merk
>
>  *
>
>     Tom Ma+
>
>  *
>
>     Toomas Erik Anijärv+
>
>
>
>
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