HOW TO DO THIS?
I'm new in numpy :)
בתאריך יום ו׳, 8 ביולי 2022 ב-16:55 מאת Christopher Markiewicz <
markiewicz at stanford.edu>:
> A lack of traceback makes it difficult to see where the error is
> occurring, but I believe the issue is that you're passing a numpy array to
> a nilearn function that expects an image.
>
> Get Outlook for Android <https://aka.ms/AAb9ysg>
> ------------------------------
> *From:* Neuroimaging <neuroimaging-bounces+markiewicz=
> stanford.edu at python.org> on behalf of נתי שטרן <nsh531 at gmail.com>
> *Sent:* Friday, July 8, 2022 9:38:57 AM
> *To:* Neuroimaging analysis in Python <neuroimaging at python.org>
> *Subject:* Re: [Neuroimaging] NILEARN - WHY THIS CODE THROWS AN ERROR?????
>
> it's a fullpath to nifti image
>
> בתאריך יום ו׳, 8 ביולי 2022 ב-16:27 מאת Matthew Brett <
> matthew.brett at gmail.com>:
>
> Hi,
>
> On Fri, Jul 8, 2022 at 2:05 PM נתי שטרן <nsh531 at gmail.com> wrote:
> >
> > fullcode:
> >
> >
> >
> > import nilearn.plotting as plot
> > import os,gzip,io
> > import nibabel as nib
> > path="C:/users/administrator/desktop/nii"
> > path2="C:/users/administrator/desktop/nii/out/"
> > for i in os.listdir(path):
> > if(".nii.gz" in i):
> > pass
> > else:
> >
> > if(".nii" in i):
> > img = nib.load(path+"/"+i)
> > data = img.get_fdata()
> > print(data)
> > import imageio
> > X=0
> > for s in data:
> > import numpy
> > aleph=numpy.array(s,dtype=numpy.int8)
> > X=X+1
> > plot.plot_img(aleph)
> >
> >
> imageio.imwrite("C:\\users\\administrator\\desktop\\nii\\"+i+str(X)+'.jpg',
> s)
> >
> >
> >
> >
> >
> >
> > error:
> > Data given cannot be loaded because it is not compatible with nibabel
> format
>
> Honestly - I wouldn't email python-list - this is a neuroimaging question.
>
> The obvious debugging step here is to see what "path+"/"+i" is. Is it
> in fact a filename of a nifti image? Try loading it in some other
> Nifti reader. If you get stuck, put the file up somewhere where we
> can get it and try loading it.
>
> Cheers,
>
> Matthew
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>
>
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