[Neuroimaging] Site Contributions

vanessa sochat vsochat at stanford.edu
Tue Oct 27 15:46:26 EDT 2015


Do we have a nipy twitter? it would be good to push the blog posts right
into the twitter-verse.

On Tue, Oct 27, 2015 at 12:38 PM, vanessa sochat <vsochat at stanford.edu>
wrote:

> Sure thing. There might be a trick to integrate the two, I'll look into
> it. I just added comments:
>
>
> http://neuroimaging.tumblr.com/post/132031797431/write-stdout-to-file-for-fsl-cluster
>
> and for now I will redirect people to neurostars.
>
> Here is how to post via email:
>
> https://www.tumblr.com/docs/en/posting#emailpostheader
>
> The email for us is:
>
> [image: Inline image 1]
>
> This is so great! Anyone can contribute absolutely anything, and they
> don't need to know what a PR is :)
>
> On Tue, Oct 27, 2015 at 12:31 PM, Ben Cipollini <bcipolli at ucsd.edu> wrote:
>
>> Oh no, another place for discussion? :-/
>>
>> Can we redirect them to the mailing list or neurostars?
>>
>> On Tue, Oct 27, 2015 at 12:19 PM, vanessa sochat <vsochat at stanford.edu>
>> wrote:
>>
>>> Hey Ariel,
>>>
>>> Do we have a nipy discus? I would like to add comments to posts so we
>>> can talk about things like these:
>>>
>>>
>>> http://neuroimaging.tumblr.com/post/132031797431/write-stdout-to-file-for-fsl-cluster
>>>
>>> Best,
>>>
>>> Vanessa
>>>
>>> On Tue, Oct 27, 2015 at 11:44 AM, Ben Cipollini <bcipolli at ucsd.edu>
>>> wrote:
>>>
>>>> Great! I'll resubmit my "issue" to the nipy repo and start "watching"
>>>> it :)
>>>>
>>>> On Tue, Oct 27, 2015 at 11:40 AM, Ariel Rokem <arokem at gmail.com> wrote:
>>>>
>>>>> Great work! Will resubmit my blog-post PR through the new mechanism.
>>>>>
>>>>> On Tue, Oct 27, 2015 at 11:38 AM, vanessa sochat <vsochat at stanford.edu
>>>>> > wrote:
>>>>>
>>>>>> Hi everyone,
>>>>>>
>>>>>> I just added the missing CNAME file, apologies for the oversight, I
>>>>>> did not know it was there :) It looks like nipy.org is working as
>>>>>> well now too - please let me know if you see any issues.
>>>>>>
>>>>>> Circle is expected to have some changes in the next week, so I am
>>>>>> going to wait for the weekend to debug the building of artifacts. Will let
>>>>>> you know when I fix that up!
>>>>>>
>>>>>> Best,
>>>>>>
>>>>>> Vanessa
>>>>>>
>>>>>> On Tue, Oct 27, 2015 at 11:30 AM, vanessa sochat <
>>>>>> vsochat at stanford.edu> wrote:
>>>>>>
>>>>>>> Hi Everyone,
>>>>>>>
>>>>>>> Site is live!
>>>>>>>
>>>>>>> https://nipy.github.io/
>>>>>>>
>>>>>>> Ariel - I'm not sure how to set up the nipy.org. Would you mind
>>>>>>> taking a look and fixing that up?
>>>>>>>
>>>>>>> Circle is having some bugs with the artifact generation, I think I
>>>>>>> can probably fix it, but not during the work week. Ben - I added your
>>>>>>> contribution to the README but didn't get the other comment in time. The
>>>>>>> good news is now anyone and everyone can submit changes as PR. I encourage
>>>>>>> everyone to familiarize yourself with tumblr, and start contributing
>>>>>>> content, PRs to tweak it.
>>>>>>>
>>>>>>> Best,
>>>>>>>
>>>>>>> Vanessa
>>>>>>>
>>>>>>> On Tue, Oct 27, 2015 at 11:10 AM, vanessa sochat <
>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>
>>>>>>>> Got it! Thanks! :)
>>>>>>>>
>>>>>>>> On Tue, Oct 27, 2015 at 11:07 AM, Ariel Rokem <arokem at gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> Hi,
>>>>>>>>> On Tue, Oct 27, 2015 at 10:56 AM, vanessa sochat <
>>>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>>>
>>>>>>>>>> Hi Ariel,
>>>>>>>>>>
>>>>>>>>>> Please add me as an admin to nipy.github.io, so I can set up
>>>>>>>>>> circle for CI. Thanks!
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> I believe I just did that. Let me know how you get on.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> Best,
>>>>>>>>>>
>>>>>>>>>> Vanessa
>>>>>>>>>>
>>>>>>>>>> On Tue, Oct 27, 2015 at 10:42 AM, vanessa sochat <
>>>>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>>>>
>>>>>>>>>>> Just as a proof of concept for adding a project - I just added a
>>>>>>>>>>> new entry to the data file (copy pasting basically), copied one file, and
>>>>>>>>>>> the entire process took me like, 48 seconds :)
>>>>>>>>>>>
>>>>>>>>>>> On Tue, Oct 27, 2015 at 10:36 AM, Ben Cipollini <
>>>>>>>>>>> bcipolli at ucsd.edu> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Thanks Vanessa!
>>>>>>>>>>>>
>>>>>>>>>>>> On Tue, Oct 27, 2015 at 10:35 AM, vanessa sochat <
>>>>>>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> I will do some tweaks and get the site working. There will be
>>>>>>>>>>>>> a change for the URL so there might be some bugs with my initial release,
>>>>>>>>>>>>> but I'll get it fixed asap. Will send an update later.
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Tue, Oct 27, 2015 at 6:48 AM, Ariel Rokem <arokem at gmail.com
>>>>>>>>>>>>> > wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>>> Oh, one more:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On Tue, Oct 27, 2015 at 6:40 AM, Ariel Rokem <
>>>>>>>>>>>>>> arokem at gmail.com> wrote:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Hi Vanessa,
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> I have a few comments/suggestions:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> 1. I would rather not have the front page be the project
>>>>>>>>>>>>>>> directory. In my opinion, the front page should instead explain briefly
>>>>>>>>>>>>>>> what this is, and lead visitors to the various other parts of the website.
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> 2. There are a few issues with formatting in the Code of
>>>>>>>>>>>>>>> Conduct page (bullet points appear as continued lines)
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> 3. Please include mindboggle in the project directory (it's
>>>>>>>>>>>>>> been recently added!).
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Other than these two, I think this is ready to be introduced
>>>>>>>>>>>>>>> as a PR against the nipy/nipy.github.com repository (you
>>>>>>>>>>>>>>> don't need any admin rights to do that, but I also just added you to "team
>>>>>>>>>>>>>>> blog" on the github nipy org, so you can even do the merge yourself, if you
>>>>>>>>>>>>>>> want).
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Cheers,
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Ariel
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> On Mon, Oct 26, 2015 at 12:56 PM, vanessa sochat <
>>>>>>>>>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Hi Eleftherios,
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> It definitely would be possible! I'm not any sort of admin
>>>>>>>>>>>>>>>> in the nipy space, so the farthest I could take it is having the repo for
>>>>>>>>>>>>>>>> someone to deploy on nipy.github.io. The code is here:
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> https://github.com/vsoch/nipy-jekyll
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> and deployment on my github pages:
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> http://vsoch.github.io/nipy-jekyll/
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> I mostly stopped working on it because I accomplished all
>>>>>>>>>>>>>>>> the things that I set out to do (jekyll site, preview on continuous
>>>>>>>>>>>>>>>> integration with circle, standard ways to add new content, and an easy way
>>>>>>>>>>>>>>>> to multiple ways to add content a la github
>>>>>>>>>>>>>>>> <http://vsoch.github.io/nipy-jekyll/contribute.html>, or
>>>>>>>>>>>>>>>> for those who aren't comfortable with pushing and pulling, la
>>>>>>>>>>>>>>>> social media <http://neuroimaging.tumblr.com>). I think I
>>>>>>>>>>>>>>>> had suggested moving forward for people to try out tumblr (and start
>>>>>>>>>>>>>>>> contributing content!), and if people were happy, to move it over to the
>>>>>>>>>>>>>>>> nipy repo. If the outcome of the work was not a desired solution, I was
>>>>>>>>>>>>>>>> content to just let it be. However if there is interest, that is definitely
>>>>>>>>>>>>>>>> still a possibility.
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Best,
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Vanessa
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> On Mon, Oct 26, 2015 at 12:34 PM, Eleftherios Garyfallidis
>>>>>>>>>>>>>>>> <garyfallidis at gmail.com> wrote:
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> Hi Vanessa and all,
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> Would it be possible to switch to your much nicer new
>>>>>>>>>>>>>>>>> website? I still see the older version being up.
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> Do you have a plan for this? Or you waiting for some
>>>>>>>>>>>>>>>>> feedback on our side?
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> Best regards,
>>>>>>>>>>>>>>>>> Eleftherios
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> On Wed, Sep 2, 2015 at 12:57 PM, Ben Cipollini <
>>>>>>>>>>>>>>>>> bcipolli at ucsd.edu> wrote:
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> I think they're good for mobile sites. I think they're
>>>>>>>>>>>>>>>>>> generally expanded by default on full screens, and compacted on mobile. So
>>>>>>>>>>>>>>>>>> I suggest to keep it, but have a regular menu that's showing on full
>>>>>>>>>>>>>>>>>> screens and hidden on mobile.
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> On Wed, Sep 2, 2015 at 9:51 AM, vanessa sochat <
>>>>>>>>>>>>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> That's a good suggestion, and I'll add as an issue so I
>>>>>>>>>>>>>>>>>>> can find it easily when the next round of changes comes around. Generally,
>>>>>>>>>>>>>>>>>>> these "hamburger" menu things are useless functionality wise, and only
>>>>>>>>>>>>>>>>>>> serve to aesthetically "get rid of the navigation" to have a clean looking
>>>>>>>>>>>>>>>>>>> site. In our case, it is probably just annoying to have the extra clicks.
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> On Wed, Sep 2, 2015 at 8:50 AM, Ben Cipollini <
>>>>>>>>>>>>>>>>>>> bcipolli at ucsd.edu> wrote:
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> This looks great. It's also cool to see "ask a
>>>>>>>>>>>>>>>>>>>> question" integrated into the website, though we'll still have to hash
>>>>>>>>>>>>>>>>>>>> things out for that.
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> Rather than open a github issue (which few may see),
>>>>>>>>>>>>>>>>>>>> I'll make a suggestion here: can we have the menu expanded by default when
>>>>>>>>>>>>>>>>>>>> accessing via a full-size screen?
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> It feels odd to me to have to expand the menu in order
>>>>>>>>>>>>>>>>>>>> to navigate anywhere, by default. To me, navigation options should be
>>>>>>>>>>>>>>>>>>>> obvious, unless pressed for space.
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> On Sun, Aug 30, 2015 at 1:14 PM, vanessa sochat <
>>>>>>>>>>>>>>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>> Hi Everyone,
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>> I've finished work on the "contribute" page with my
>>>>>>>>>>>>>>>>>>>>> thinking for how to contribute various content:
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>> http://vsoch.github.io/nipy-jekyll/contribute.html
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>> and as an example, put up a quick blog post:
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>> http://neuroimaging.tumblr.com/
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>> The old "example" blog posts are hidden (private) and
>>>>>>>>>>>>>>>>>>>>> can be viewed if you are a contributor. I'd like to add anyone and everyone
>>>>>>>>>>>>>>>>>>>>> interested to contribute as "official" contributors via tumblr - if you are
>>>>>>>>>>>>>>>>>>>>> interested please send me your email address. I've already invited some of
>>>>>>>>>>>>>>>>>>>>> you for which I know the email.
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>> Best,
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>> Vanessa
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>>>>>>>> Vanessa Villamia Sochat
>>>>>>>>>>>>>>>>>>>>> Stanford University
>>>>>>>>>>>>>>>>>>>>> (603) 321-0676
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>>>>>> Vanessa Villamia Sochat
>>>>>>>>>>>>>>>>>>> Stanford University
>>>>>>>>>>>>>>>>>>> (603) 321-0676
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>>> Vanessa Villamia Sochat
>>>>>>>>>>>>>>>> Stanford University
>>>>>>>>>>>>>>>> (603) 321-0676
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Vanessa Villamia Sochat
>>>>>>>>>>>>> Stanford University
>>>>>>>>>>>>> (603) 321-0676
>>>>>>>>>>>>>
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> --
>>>>>>>>>>> Vanessa Villamia Sochat
>>>>>>>>>>> Stanford University
>>>>>>>>>>> (603) 321-0676
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> Vanessa Villamia Sochat
>>>>>>>>>> Stanford University
>>>>>>>>>> (603) 321-0676
>>>>>>>>>>
>>>>>>>>>> _______________________________________________
>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> Neuroimaging mailing list
>>>>>>>>> Neuroimaging at python.org
>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Vanessa Villamia Sochat
>>>>>>>> Stanford University
>>>>>>>> (603) 321-0676
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Vanessa Villamia Sochat
>>>>>>> Stanford University
>>>>>>> (603) 321-0676
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Vanessa Villamia Sochat
>>>>>> Stanford University
>>>>>> (603) 321-0676
>>>>>>
>>>>>> _______________________________________________
>>>>>> Neuroimaging mailing list
>>>>>> Neuroimaging at python.org
>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>
>>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> Neuroimaging mailing list
>>>>> Neuroimaging at python.org
>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>
>>>>>
>>>>
>>>> _______________________________________________
>>>> Neuroimaging mailing list
>>>> Neuroimaging at python.org
>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>
>>>>
>>>
>>>
>>> --
>>> Vanessa Villamia Sochat
>>> Stanford University
>>> (603) 321-0676
>>>
>>> _______________________________________________
>>> Neuroimaging mailing list
>>> Neuroimaging at python.org
>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>
>>>
>>
>> _______________________________________________
>> Neuroimaging mailing list
>> Neuroimaging at python.org
>> https://mail.python.org/mailman/listinfo/neuroimaging
>>
>>
>
>
> --
> Vanessa Villamia Sochat
> Stanford University
> (603) 321-0676
>



-- 
Vanessa Villamia Sochat
Stanford University
(603) 321-0676
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