From thomas.f.hahn2 at gmail.com Sun Jan 4 04:23:23 2015 From: thomas.f.hahn2 at gmail.com (thomas hahn) Date: Sat, 3 Jan 2015 21:23:23 -0600 Subject: [Ncr-Python.in] Help with finding tutors for Python, Linux, R, Perl, Octave, MATLAB and/or Cytoscape for yeast microarray analysis, next generation sequencing and constructing gene interaction networks Message-ID: *Help with finding tutors for Python, Linux, R, Perl, Octave, MATLAB and/or Cytoscape for yeast microarray analysis, next generation sequencing and constructing gene interaction networks* Hi I am a visually impaired bioinformatics graduate student using microarray data for my master?s thesis aimed at deciphering the mechanism by which the yeast wild type can suppress the rise of free reactive oxygen species (ROS) induced by caloric restriction (CR) but the Atg15 and Erg6 knockout mutant cannot. Since my remaining vision is very limited I need very high magnification. But that makes my visual field very small. Therefore I need somebody to teach me how to use these programming environments, especially for microarray analysis, next generation sequencing and constructing gene and pathway interaction networks. This is very difficult for me to figure out without assistance because Zoomtext, my magnification and text to speech software, on which I am depending because I am almost blind, has problems reading out aloud many programming related websites to me. And even those websites it can read, it can only read sequentially from left to right and then from top to bottom. Unfortunately, this way of acquiring, finding, selecting and processing new information and answering questions is too tiresome, exhausting, ineffective and especially way too time consuming for graduating with a PhD in bioinformatics before my funding runs out despite being severely limited by my visual disability. I would also need help with writing a good literature review and applying the described techniques to my own yeast Affimetrix microarray dataset because I cannot see well enough to find all relevant publications on my own. Some examples for specific tasks I urgently need help with are: 1. Analyzing and comparing the three publically available microarray datasets that can be accessed at: A. http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41860 B. http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38635 C. http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9217 2. Learning how to use the Affymetrics microarray analysis software for the Yeast 2 chip, which can be found at http://www.affymetrix.com/support/technical/libraryfilesmain.affx 3. For Cytoscape I need somebody, who can teach me how to execute the tutorials at the following links because due to my very limited vision field I cannot see tutorial and program interface simultaneously. A. http://opentutorials.cgl.ucsf.edu/index.php/Tutorial:Introduction_to_Cytoscape_3.1-part2#Importing_and_Exploring_Your_Data B. http://opentutorials.cgl.ucsf.edu/index.php/Tutorial:Filtering_and_Editing_in_Cytoscape_3 C. http://cytoscape.org/manual/Cytoscape2_8Manual.html#Import%20Fixed-Format%20Network%20Files D. http://wiki.cytoscape.org/Cytoscape_User_Manual/Network_Formats 4. Learning how to use the TopGo R package to perform statistical analysis on GO enrichments. Since I am legally blind the rehab agency is giving me money to pay tutors for this purpose. Could you please help me getting in touch regarding this with anybody, who could potentially be interested in teaching me one on one thus saving me time for acquiring new information and skills, which I need to finish my thesis on time, so that I can remain eligible for funding to continue in my bioinformatics PhD program despite being almost blind? The tutoring can be done remotely via TeamViewer 5 and Skype. Hence, it does not matter where my tutors are physically located. Currently I have tutors in Croatia and UK. But since they both work full time jobs while working on their PhD dissertation they only have very limited time to teach me online. Could you therefore please forward this request for help to anybody, who could potentially be interested or, who could connect me to somebody, who might be, because my graduation and career depend on it? Who else would you recommend me to contact regarding this? Where else could I post this because I am in urgent need for help? Could you please contact me directly via email at Thomas.F.Hahn2 at gmail.com and/or Skype at tfh002 because my text to speech software has problems to read out this website aloud to me? I thank you very much in advance for your thoughts, ideas, suggestions, recommendations, time, help, efforts and support. With very warm regards, *Thomas Hahn* 1) *Graduate student in the Joint Bioinformatics Program at the University of Arkansas at Little Rock (UALR) and the University of Arkansas Medical Sciences (UAMS) &* 2) *Research & Industry Advocate, Founder and Board Member of RADISH MEDICAL SOLUTIONS, INC. (**http://www.radishmedical.com/thomas-hahn/* *) * *Primary email: **Thomas.F.Hahn2 at gmail.com* *Cell phone: 318 243 3940* *Office phone: 501 682 1440* *Office location: EIT 535* *Skype ID: tfh002* *Virtual Google Voice phone to reach me while logged into my email (i.e. * *Thomas.F.Hahn2 at gmail.com* *), even when having no cell phone reception, e.g. in big massive buildings: *(501) 301-4890 <%28501%29%20301-4890> *Web links: * 1) https://ualr.academia.edu/ThomasHahn 2) https://www.linkedin.com/pub/thomas-hahn/42/b29/42 3) http://facebook.com/Thomas.F.Hahn 4) https://twitter.com/Thomas_F_Hahn -------------- next part -------------- An HTML attachment was scrubbed... URL: From vnbang2003 at gmail.com Wed Jan 21 05:00:27 2015 From: vnbang2003 at gmail.com (vijay kumar) Date: Wed, 21 Jan 2015 09:30:27 +0530 Subject: [Ncr-Python.in] Fwd: [Inpycon] PyBelgaum 2015 In-Reply-To: References: Message-ID: FYI ---------- Forwarded message ---------- From: iliyas shirol Date: Tue, Jan 20, 2015 at 10:06 PM Subject: [Inpycon] PyBelgaum 2015 To: Mailing list for the PyCon India conference Hello everyone, We are happy to announce the first Python conference of the year 2015. Location: Belgaum, Karnataka Dates: 28th Feb - 1st March 2015. Website: http://pybelgaum.org/2015/ The CFP is now open. We request people to submit their proposals for talks/workshops. - http://junction.pybelgaum.org/pybelgaum/proposals/ If anyone can help to get the sponsorship for the event then please guide them to the below URL, - Sponsorship Prospectus link: http://pybelgaum.org/2015/static/images/PyBelgaum_Sponsorship_Brochure.pdf Facebook: https://www.facebook.com/PyBelgaum Twitter: https://twitter.com/pybelgaum Please do spread the word. Thanks. _______________________________________________ Inpycon mailing list Inpycon at python.org https://mail.python.org/mailman/listinfo/inpycon -- Thanks, Vijay -------------- next part -------------- An HTML attachment was scrubbed... URL: From satyaakam at gmail.com Wed Jan 21 14:18:32 2015 From: satyaakam at gmail.com (satyaakam goswami) Date: Wed, 21 Jan 2015 18:48:32 +0530 Subject: [Ncr-Python.in] Fwd: [Inpycon] PyBelgaum 2015 In-Reply-To: References: Message-ID: FYI can we expect some events like these in NCR ? ---------- Forwarded message ---------- From: iliyas shirol Date: Tue, Jan 20, 2015 at 10:06 PM Subject: [Inpycon] PyBelgaum 2015 To: Mailing list for the PyCon India conference Hello everyone, We are happy to announce the first Python conference of the year 2015. Location: Belgaum, Karnataka Dates: 28th Feb - 1st March 2015. Website: http://pybelgaum.org/2015/ The CFP is now open. We request people to submit their proposals for talks/workshops. - http://junction.pybelgaum.org/pybelgaum/proposals/ If anyone can help to get the sponsorship for the event then please guide them to the below URL, - Sponsorship Prospectus link: http://pybelgaum.org/2015/static/images/PyBelgaum_Sponsorship_Brochure.pdf Facebook: https://www.facebook.com/PyBelgaum Twitter: https://twitter.com/pybelgaum Please do spread the word. Thanks. _______________________________________________ Inpycon mailing list Inpycon at python.org https://mail.python.org/mailman/listinfo/inpycon -------------- next part -------------- An HTML attachment was scrubbed... URL: From noufal at gmail.com Wed Jan 21 17:21:34 2015 From: noufal at gmail.com (Noufal Ibrahim) Date: Wed, 21 Jan 2015 21:51:34 +0530 Subject: [Ncr-Python.in] Fwd: [Inpycon] PyBelgaum 2015 In-Reply-To: (satyaakam goswami's message of "Wed, 21 Jan 2015 18:48:32 +0530") References: Message-ID: <87r3uo85pt.fsf@gmail.com> On Wed, Jan 21 2015, satyaakam goswami wrote: > FYI can we expect some events like these in NCR ? [...] Take the lead Satyaakam. I'm sure there are fence sitters who'll jump off and dance to your tune. -- Cordially, Noufal http://nibrahim.net.in From satyaakam at gmail.com Wed Jan 21 17:34:22 2015 From: satyaakam at gmail.com (satyaakam goswami) Date: Wed, 21 Jan 2015 22:04:22 +0530 Subject: [Ncr-Python.in] Fwd: [Inpycon] PyBelgaum 2015 In-Reply-To: <87r3uo85pt.fsf@gmail.com> References: <87r3uo85pt.fsf@gmail.com> Message-ID: > > Take the lead Satyaakam. I'm sure there are fence sitters who'll jump > off and dance to your tune. > ?i am not in NCR anymore, so yes there are people around who are trying and can do it, that was my idea of prompting too.? ?thanks? ? ? -Satya Satyaakam.net | fossevents.in |? -------------- next part -------------- An HTML attachment was scrubbed... URL: From stpmds at gmail.com Wed Jan 21 06:10:26 2015 From: stpmds at gmail.com (m-murali) Date: Wed, 21 Jan 2015 10:40:26 +0530 Subject: [Ncr-Python.in] [Chennaipy] Fwd: [Inpycon] PyBelgaum 2015 In-Reply-To: References: Message-ID: <000601d03538$939d61b0$bad82510$@gmail.com> wish it all success. I wish at other places also such activities start and flourish. regards. m.murali From: Chennaipy [mailto:chennaipy-bounces+stpmds=gmail.com at python.org] On Behalf Of vijay kumar Sent: Wednesday, January 21, 2015 9:30 AM To: chennaipy at googlegroups.com; ncr-python.in at python.org; kolpy at python.org; chennaipy at python.org Subject: [Chennaipy] Fwd: [Inpycon] PyBelgaum 2015 FYI ---------- Forwarded message ---------- From: iliyas shirol Date: Tue, Jan 20, 2015 at 10:06 PM Subject: [Inpycon] PyBelgaum 2015 To: Mailing list for the PyCon India conference Hello everyone, We are happy to announce the first Python conference of the year 2015. Location: Belgaum, Karnataka Dates: 28th Feb - 1st March 2015. Website: http://pybelgaum.org/2015/ The CFP is now open. We request people to submit their proposals for talks/workshops. - http://junction.pybelgaum.org/pybelgaum/proposals/ If anyone can help to get the sponsorship for the event then please guide them to the below URL, - Sponsorship Prospectus link: http://pybelgaum.org/2015/static/images/PyBelgaum_Sponsorship_Brochure.pdf Facebook: https://www.facebook.com/PyBelgaum Twitter: https://twitter.com/pybelgaum Please do spread the word. Thanks. _______________________________________________ Inpycon mailing list Inpycon at python.org https://mail.python.org/mailman/listinfo/inpycon -- Thanks, Vijay -------------- next part -------------- An HTML attachment was scrubbed... URL: From noufal at gmail.com Wed Jan 21 17:58:10 2015 From: noufal at gmail.com (Noufal Ibrahim) Date: Wed, 21 Jan 2015 22:28:10 +0530 Subject: [Ncr-Python.in] [Chennaipy] Fwd: [Inpycon] PyBelgaum 2015 In-Reply-To: <000601d03538$939d61b0$bad82510$@gmail.com> (m-murali's message of "Wed, 21 Jan 2015 10:40:26 +0530") References: <000601d03538$939d61b0$bad82510$@gmail.com> Message-ID: <87lhkw840t.fsf@gmail.com> On Wed, Jan 21 2015, m-murali wrote: > wish it all success. > I wish at other places also such activities start and flourish. We all do. The important part is for someone to actually take the lead and start doing something. The PSSI can help. [...] -- Cordially, Noufal http://nibrahim.net.in From gora at mimirtech.com Thu Jan 22 07:13:35 2015 From: gora at mimirtech.com (Gora Mohanty) Date: Thu, 22 Jan 2015 11:43:35 +0530 Subject: [Ncr-Python.in] Fwd: [Inpycon] PyBelgaum 2015 In-Reply-To: References: Message-ID: On 21 January 2015 at 18:48, satyaakam goswami wrote: > FYI can we expect some events like these in NCR ? Why, certainly! As per a long-standing rule, you have just volunteered yourself for organising the event in Delhi/NCR :-) Seriously, I would love to see this happen here, but given the weakness of the group here I think that we should proceed with caution. Maybe, do a few one-day events before going for a more ambitious one. However, I would like to stop doing "Introduction to Python" type of events which IMHO do not add much value, and instead aim at a more serious event, even if it is of just one-day duration. Regards, Gora From anuvrat at anuvrat.in Thu Jan 22 07:47:12 2015 From: anuvrat at anuvrat.in (Anuvrat Parashar) Date: Thu, 22 Jan 2015 12:17:12 +0530 Subject: [Ncr-Python.in] Fwd: [Inpycon] PyBelgaum 2015 In-Reply-To: References: Message-ID: Agree with Gora. @satyag Pertaining to the various reasons that we have mulled over in previous meetups - a two day "conference" would be kind of an over stretch. NCR needs somebody with your networking capabilities and time management between work <-> activism <-> life to lead such an initiative. In Naufals's words "fence sitters" like me will jump in when we see momentum. On Thu, Jan 22, 2015 at 11:43 AM, Gora Mohanty wrote: > On 21 January 2015 at 18:48, satyaakam goswami > wrote: > > FYI can we expect some events like these in NCR ? > > Why, certainly! As per a long-standing rule, you have just volunteered > yourself for organising the event in Delhi/NCR :-) > > Seriously, I would love to see this happen here, but given the > weakness of the group here I think that we should proceed with > caution. Maybe, do a few one-day events before going for a more > ambitious one. However, I would like to stop doing "Introduction to > Python" type of events which IMHO do not add much value, and instead > aim at a more serious event, even if it is of just one-day duration. > > Regards, > Gora > _______________________________________________ > https://mail.python.org/mailman/listinfo/ncr-python.in > Mailing list guidelines : > http://python.org.in/wiki/NcrPython/MailingListGuidelines > -- Anuvrat Parashar http;//anuvrat.in -------------- next part -------------- An HTML attachment was scrubbed... URL: From prashant.barca at gmail.com Fri Jan 23 10:33:17 2015 From: prashant.barca at gmail.com (Prashant Anantharaman) Date: Fri, 23 Jan 2015 15:03:17 +0530 Subject: [Ncr-Python.in] Startup Weekend Chennai Edition Message-ID: Hello all, We?re happy to announce that the *Startup Weekend* Chennai ?(http://sw.krk.org.in)? ? is happening at the end of this month, Jan 29th to 31st. This time, the *Kurukshetra* team is extremely delighted to host Startup Weekend Chennai edition as a part of *Kurukshetra *, an International techno-management festival of College of Engineering, Guindy conducted under the coveted patronage of UNESCO. Our goal is to create an environment where passionate people can come together to get things done; to learn, network, bridge the gap between trades, expose potential and see actual results. We are proud to be a part of this type of innovative collaboration and we hope you will help us reach our goals by supporting this global movement on a local level. *Startup Weekend* has held 1000+ events in 150+ countries around the world, and we are looking forward to making a big dent in the *Chennai* and *Banglore *regions. With the help of local supporters, *we are planning to leverage our global reach to impact our local community.* The event will be held between *29th-31st January 2015* and we have confirmed a venue at *College of Engineering, Guindy, Anna University*. *------- Format ----------------------* 50 hours of Idea-Prototype-Production with practical sessions and hands on mentoring from experts. Areas include: 1)Design 2)Growth 3)Technology 4)Product Market Fit Mentors include seasoned entrepreneurs and experts in the field of digital marketing, design from myntra, freecharge and judged by *The CEO of Bharat Matrimony & the CEO of Orangescape* *? *and few other successful entrepreneurs.? *------- Who can participate----------* 1) ?Open for ? Students and Professionals ?? who are entrepreneurial ? and thinking about starting up or started over with their idea and looking ?for help in? scal ?ing? or form a team. 2) Start up enthusiasts who are looking to build their team with like minded people ?3) Startups who want to benefit specifically from the talks or mentors.? ? *??* *------- Follow Up after event---------* 1) Mentor ship from entrepreneurs 2) Chance to get accepted into Accelerators *?* *?* *------- * *?* *Registration---------* ? 1) Registration fee: Rs 2000 for professionals / Rs.750 for students. *Special offer till 26th January :* *Professionals can use the code "CORP" while buying tickets at Explara site to avail a flat discount of Rs.1000.* *CEG/NITs/IITs/IIMs/ISB students and alumni* also get special discounted fee of Rs.500. Please mail **yourcollege id card's scanned copy or a snap to * *industryrelations at kurukshtra.org.in to claim your Discount code.* 2) Scholarships available for special cases. ?*More info @ http://sw.krk.org.in * *Register @ https://in.explara.com/e/chennai * P.S : * Alumni who are working on their own startups Regards, Prashant Anantharaman -------------- next part -------------- An HTML attachment was scrubbed... URL: From gora at mimirtech.com Fri Jan 23 11:03:57 2015 From: gora at mimirtech.com (Gora Mohanty) Date: Fri, 23 Jan 2015 15:33:57 +0530 Subject: [Ncr-Python.in] Startup Weekend Chennai Edition In-Reply-To: References: Message-ID: On 23 January 2015 at 15:03, Prashant Anantharaman wrote: > Hello all, > > We?re happy to announce that the Startup Weekend Chennai > (http://sw.krk.org.in) > is happening at the end of this month, Jan 29th to 31st. And, why did you choose to spam this list? Regards, Gora -------------- next part -------------- An HTML attachment was scrubbed... URL: From me at ashutoshksingh.com Fri Jan 30 04:02:48 2015 From: me at ashutoshksingh.com (ashutosh singh) Date: Fri, 30 Jan 2015 08:32:48 +0530 Subject: [Ncr-Python.in] (no subject) Message-ID: hello everyone, *->*i am going to deliver a hand on session on basic of python at my college (GNIOT,greater noida). I am done with the basic presentation still need some material to make it better as here anyone hardly knows about python. I am also going to refer ncr python group as a reference and will talk about this group. *->*I am also attached to the facebook group GNDG(Greater Noida Developer Group) https://www.facebook.com/groups/gndgadmin/ so we can collaborate and help to spread python in this area which will definitely a BIG step towards python community. thanks Ashutosh Kumar Singh www.ashutoshksingh.com -------------- next part -------------- An HTML attachment was scrubbed... URL: From jayrajput at gmail.com Fri Jan 30 05:16:05 2015 From: jayrajput at gmail.com (Jay Rajput) Date: Thu, 29 Jan 2015 23:16:05 -0500 Subject: [Ncr-Python.in] (no subject) In-Reply-To: References: Message-ID: For python basics, I like the Google Python class given by Nick Parlante. I gave a presentation to few colleagues. I just imiated what Nick taught in that videos and it turned out to be great for all. Google for Google Python class. Let me know if you have questions. From hari207 at yahoo.com Fri Jan 30 05:29:20 2015 From: hari207 at yahoo.com (Hariom Upadhyay) Date: Fri, 30 Jan 2015 04:29:20 +0000 (UTC) Subject: [Ncr-Python.in] (no subject) In-Reply-To: References: Message-ID: <1377166636.2723962.1422592160387.JavaMail.yahoo@mail.yahoo.com> How I will get the PPT??Hari Om Upadhyay On Friday, January 30, 2015 9:47 AM, Jay Rajput wrote: For python basics, I like the Google Python class given by Nick Parlante. I gave a presentation to few colleagues. I just imiated what Nick taught in that videos and it turned out to be great for all. Google for Google Python class. Let me know if you have questions. _______________________________________________ https://mail.python.org/mailman/listinfo/ncr-python.in Mailing list guidelines :http://python.org.in/wiki/NcrPython/MailingListGuidelines -------------- next part -------------- An HTML attachment was scrubbed... URL: