[AstroPy] errors returned by astropy.test()
José Vinícius
josevinicius at iecom.org.br
Sun Jul 5 11:42:35 EDT 2015
Hi guys!
I'm trying to install the developer's version of astropy, and after using
>> import astropy
>> astropy.test()
I'm receiving several errors: *= 9 failed, 9053 passed, 170 skipped, 43
xfailed, 2 xpassed in 284.03 seconds == *1
The log of failures is as follows
=================================== FAILURES
===================================
_______________________ test_getitem_metadata_regression
_______________________
* def test_getitem_metadata_regression():*
* """*
* Regression test for #1471: MaskedArray does not call
__array_finalize__ so*
* the meta-data was not getting copied over. By overloading
_update_from we*
* are able to work around this bug.*
* """*
* # Make sure that meta-data gets propagated with __getitem__*
* c = table.Column(data=[1,2], name='a', description='b', unit='m',
format="%i", meta={'c': 8})*
* assert c[1:2].name == 'a'*
* assert c[1:2].description == 'b'*
* assert c[1:2].unit == 'm'*
* assert c[1:2].format == '%i'*
* assert c[1:2].meta['c'] == 8*
* c = table.MaskedColumn(data=[1,2], name='a', description='b',
unit='m', format="%i", meta={'c': 8})*
* assert c[1:2].name == 'a'*
* assert c[1:2].description == 'b'*
* assert c[1:2].unit == 'm'*
* assert c[1:2].format == '%i'*
* assert c[1:2].meta['c'] == 8*
* # As above, but with take() - check the method and the function*
* c = table.Column(data=[1,2,3], name='a', description='b',
unit='m', format="%i", meta={'c': 8})*
* for subset in [c.take([0, 1]), np.take(c, [0, 1])]:*
* assert subset.name <http://subset.name> == 'a'*
* assert subset.description == 'b'*
* assert subset.unit == 'm'*
* assert subset.format == '%i'*
* assert subset.meta['c'] == 8*
* # Metadata isn't copied for scalar values*
* if NUMPY_LT_1_8:*
* with pytest.raises(ValueError):*
*> c.take(0)*
*E Failed: DID NOT RAISE*
astropy/table/tests/test_column.py:467: Failed
_______________________ test_getitem_metadata_regression
_______________________
* def test_getitem_metadata_regression():*
* """*
* Regression test for #1471: MaskedArray does not call
__array_finalize__ so*
* the meta-data was not getting copied over. By overloading
_update_from we*
* are able to work around this bug.*
* """*
* # Make sure that meta-data gets propagated with __getitem__*
* c = table.Column(data=[1,2], name='a', description='b', unit='m',
format="%i", meta={'c': 8})*
* assert c[1:2].name == 'a'*
* assert c[1:2].description == 'b'*
* assert c[1:2].unit == 'm'*
* assert c[1:2].format == '%i'*
* assert c[1:2].meta['c'] == 8*
* c = table.MaskedColumn(data=[1,2], name='a', description='b',
unit='m', format="%i", meta={'c': 8})*
* assert c[1:2].name == 'a'*
* assert c[1:2].description == 'b'*
* assert c[1:2].unit == 'm'*
* assert c[1:2].format == '%i'*
* assert c[1:2].meta['c'] == 8*
* # As above, but with take() - check the method and the function*
* c = table.Column(data=[1,2,3], name='a', description='b',
unit='m', format="%i", meta={'c': 8})*
* for subset in [c.take([0, 1]), np.take(c, [0, 1])]:*
* assert subset.name <http://subset.name> == 'a'*
* assert subset.description == 'b'*
* assert subset.unit == 'm'*
* assert subset.format == '%i'*
* assert subset.meta['c'] == 8*
* # Metadata isn't copied for scalar values*
* if NUMPY_LT_1_8:*
* with pytest.raises(ValueError):*
*> c.take(0)*
*E Failed: DID NOT RAISE*
astropy/table/tests/test_column.py:467: Failed
_______________________ test_masked_row_with_object_col
________________________
* def test_masked_row_with_object_col():*
* """*
* Numpy < 1.8 has a bug in masked array that prevents access a row
if there is*
* a column with object type.*
* """*
* t = table.Table([[1]], dtype=['O'], masked=True)*
* if NUMPY_LT_1_8:*
* with pytest.raises(ValueError):*
* t['col0'].mask = False*
*> t[0].as_void()*
*E Failed: DID NOT RAISE*
astropy/table/tests/test_row.py:26: Failed
______________ TestRow.test_row_and_as_void_with_objects[masked]
_______________
self = <astropy.table.tests.test_row.TestRow instance at 0x108ed2ab8>
table_types = <astropy.table.tests.conftest.TableTypes instance at
0x108ed2368>
* def test_row_and_as_void_with_objects(self, table_types):*
* """Test the deprecated data property and as_void() method"""*
* t = table_types.Table([[{'a': 1}, {'b': 2}]], names=('a',))*
* assert t[0][0] == {'a': 1}*
* assert t[0]['a'] == {'a': 1}*
* if NUMPY_LT_1_8 and t.masked:*
* # With numpy < 1.8 there is a bug setting mvoid with*
* # an object.*
* with pytest.raises(ValueError):*
*> t[0].as_void()*
*E Failed: DID NOT RAISE*
astropy/table/tests/test_row.py:197: Failed
_______________________ test_masked_row_with_object_col
________________________
* def test_masked_row_with_object_col():*
* """*
* Numpy < 1.8 has a bug in masked array that prevents access a row
if there is*
* a column with object type.*
* """*
* t = table.Table([[1]], dtype=['O'], masked=True)*
* if NUMPY_LT_1_8:*
* with pytest.raises(ValueError):*
* t['col0'].mask = False*
*> t[0].as_void()*
*E Failed: DID NOT RAISE*
astropy/table/tests/test_row.py:26: Failed
______________ TestRow.test_row_and_as_void_with_objects[masked]
_______________
self = <astropy.table.tests.test_row.TestRow instance at 0x10928e128>
table_types = <astropy.table.tests.conftest.TableTypes instance at
0x105bae128>
* def test_row_and_as_void_with_objects(self, table_types):*
* """Test the deprecated data property and as_void() method"""*
* t = table_types.Table([[{'a': 1}, {'b': 2}]], names=('a',))*
* assert t[0][0] == {'a': 1}*
* assert t[0]['a'] == {'a': 1}*
* if NUMPY_LT_1_8 and t.masked:*
* # With numpy < 1.8 there is a bug setting mvoid with*
* # an object.*
* with pytest.raises(ValueError):*
*> t[0].as_void()*
*E Failed: DID NOT RAISE*
astropy/table/tests/test_row.py:197: Failed
_________________________ test_repr_array_of_quantity
__________________________
* def test_repr_array_of_quantity():*
* """*
* Test print/repr of object arrays of Quantity objects with
different*
* units.*
* Regression test for the issue first reported in*
* https://github.com/astropy/astropy/issues/3777
<https://github.com/astropy/astropy/issues/3777>*
* """*
* a = np.array([1 * u.m, 2 * u.s], dtype=object)*
* if NUMPY_LT_1_7:*
* # Numpy 1.6.x has some different defaults for how to display
object*
* # arrays (it uses the str() of the objects instead of the
repr()*
* assert repr(a) == 'array([1.0 m, 2.0 s], dtype=object)'*
* assert str(a) == '[1.0 m 2.0 s]'*
* else:*
*> assert repr(a) == 'array([<Quantity 1.0 m>, <Quantity 2.0 s>],
dtype=object)'*
*E assert 'array([1.0, ...dtype=object)' ==
'array([<Quant...dtype=object)'*
*E - array([1.0, 2.0], dtype=object)*
*E + array([<Quantity 1.0 m>, <Quantity 2.0 s>], dtype=object)*
astropy/units/tests/test_quantity.py:1180: AssertionError
______________________ TestQuantityStatsFuncs.test_median
______________________
self =
<astropy.units.tests.test_quantity_array_methods.TestQuantityStatsFuncs
object at 0x109b710d0>
* def test_median(self):*
* q1 = np.array([1., 2., 4., 5., 6.]) * u.m*
*> assert np.median(q1) == 4. * u.m*
*E assert 4.0 == (4.0 * Unit("m"))*
*E + where 4.0 = <function median at 0x1027548c0>(<Quantity [ 1.,
2., 4., 5., 6.] m>)*
*E + where <function median at 0x1027548c0> = np.median*
*E + and Unit("m") = u.m*
astropy/units/tests/test_quantity_array_methods.py:178: AssertionError
__________________ TestQuantityStatsFuncs.test_median_inplace
__________________
self =
<astropy.units.tests.test_quantity_array_methods.TestQuantityStatsFuncs
object at 0x109b7c2d0>
* def test_median_inplace(self):*
* q1 = np.array([1., 2., 4., 5., 6.]) * u.m*
* qi = 1.5 * u.s*
* np.median(q1, out=qi)*
*> assert qi == 4 * u.m*
*E assert <Quantity 4.0 s> == (4 * Unit("m"))*
*E + where Unit("m") = u.m*
astropy/units/tests/test_quantity_array_methods.py:184: AssertionError
*= 9 failed, 9053 passed, 170 skipped, 43 xfailed, 2 xpassed in 284.03
seconds ==*
1
Does anybody know what might be causing these errors? Is there anything to
be concerned with?
Thank you in advance.
Astropy 1.1.dev12835
Darwin-14.3.0 - 64bit
Python 2.7.6
Numpy 1.8.0rc1
Scipy 0.13.0b1
Matplotlib 1.3.1
h5py 2.5.0
CVLattes: http://lattes.cnpq.br/3267230342393209
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.python.org/pipermail/astropy/attachments/20150705/f421b9d6/attachment.html>
More information about the AstroPy
mailing list