[AstroPy] Constructing an astropy table with colnames and dtypes of existing table
Alexa Villaume
avillaum at ucsc.edu
Wed Apr 29 14:57:22 EDT 2015
Thank you, everyone, for your helpful responses.
If it’s of any interest, I ended up going with Tom A.’s solution because one of my columns holds arrays instead of single values. The dtype entry for that looks like ‘(‘SPEC’, ‘>f4’, (7925,)’ which was fully copied in Tom A.’s solution but not Tom R.’s.
Best,
Alexa
On Apr 29, 2015, at 11:45 AM, Andrew Hearin <andrew.hearin at yale.edu> wrote:
> You beat me to the punch, Tom, I was going to suggest exactly this. Numpys built-in empty_like method is extremely convenient, and it would be great to have an analogous astropy table method.
>
>
> On Apr 29, 2015, at 2:21 PM, Thomas Robitaille <thomas.robitaille at gmail.com> wrote:
>
>> On 29 April 2015 at 19:19, Aldcroft, Thomas
>> <aldcroft at head.cfa.harvard.edu> wrote:
>>>
>>>
>>> On Wed, Apr 29, 2015 at 2:13 PM, Aldcroft, Thomas
>>> <aldcroft at head.cfa.harvard.edu> wrote:
>>>>
>>>>
>>>>
>>>> On Wed, Apr 29, 2015 at 1:40 PM, Alexa Villaume <avillaum at ucsc.edu> wrote:
>>>>>
>>>>> Hi everybody,
>>>>>
>>>>> I’m trying to construct an astropy table using the exact same columns and
>>>>> corresponding dtypes of an existing table. The documentation goes into using
>>>>> existing columns but it wasn’t as clear to me on how to handle the data
>>>>> types. For example, I have an existing table ‘irtf’ and I want to make a
>>>>> table ‘irtf_hb’ if I do,
>>>>>
>>>>> irtf_hb = Table(names=irtf.colnames)
>>>>>
>>>>> the table is initialized with all the right column names but the dtypes
>>>>> are all floats. However, I can’t do this,
>>>>>
>>>>> irtf_hb = Table(names=irtf.colnames, dtype=irtf.dtype)
>>>>>
>>>>> Because I get an error, “ValueError: dtype must be a list or None”. I
>>>>> haven’t had any luck with trying to change the type of irtf.dtype or using
>>>>> list comprehension to extract a list of dtypes.
>>>>>
>>>>> Is there a simple way to use the dtypes of an existing table to
>>>>> initialize a new table?
>>>>
>>>>
>>>> You should be able to do:
>>>>
>>>>>>> irtf_hb = Table(irtf[0:0])
>>>>
>>>> This is a slight hack, but it's pretty simple and should give you a
>>>> zero-length table with all the original table properties. I tested on a
>>>> simple case but haven't checked in detail.
>>>
>>>
>>> BTW, "all the original table properties" includes all column and table meta
>>> data (e.g. units), so this should be the preferred idiom.
>>
>> How about a new class method that does something like
>> ``np.empty_like`` called ``Table.empty_like``?
>>
>> Cheers,
>> Tom
>>
>>>
>>> - Tom
>>>
>>>>
>>>>
>>>> In [3]: from astropy.table import Table
>>>>
>>>> In [4]: t = Table([[1]])
>>>>
>>>> In [5]: t2 = Table(t[0:0])
>>>>
>>>> In [6]: t2
>>>> Out[6]:
>>>> <Table masked=False length=0>
>>>> col0
>>>> int64
>>>> -----
>>>>
>>>> In [7]:
>>>>
>>>> - Tom
>>>>
>>>>>
>>>>>
>>>>> Thank you,
>>>>> Alexa
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