[AstroPy] pywcs problem on Linux
Michael Droettboom
mdroe at stsci.edu
Wed May 6 09:30:16 EDT 2009
It looks as if your new traceback is related to an API change -- all of
the transformation functions now require an "offset" argument, which
should be 0 for C/Numpy indexing or 1 for Fortran/FITS indexing.
If that change doesn't work for you, can you send me a FITS file and
script to reproduce this off list? I'll see if I can reproduce what
you're seeing here.
Mike
OKUMURA, Akira wrote:
> Hello Nadia,
>
> Thank you for your reply. I didn't know that new version has been
> released recently. I installed pywcs-1.4-4.3.tar.gz and tried test.py
> in the package. But I got errors again.
>
> 1)
> $ ./test.py .
> =
> =
> =
> ========================================================================
> ./cmap.fits
> zsh: segmentation fault ./test.py .
>
> the line wcs.wcs.fix() causes the seg fault.
>
> 2) comment out wcs.wcs.fix()
> $ ./test.py .
> =
> =
> =
> ========================================================================
> ./cmap.fits
> Traceback (most recent call last):
> File "./test.py", line 82, in <module>
> run_directory(directory)
> File "./test.py", line 74, in run_directory
> test_file(filepath)
> File "./test.py", line 38, in test_file
> world = wcs.wcs_pix2sky(data3)
> File "/usr/local/lib/python2.5/site-packages/pywcs/pywcs.py", line
> 419, in wcs_pix2sky
> *args, **kwargs)
> File "/usr/local/lib/python2.5/site-packages/pywcs/pywcs.py", line
> 378, in _array_converter
> raise TypeError("Expected 2 or 3 arguments, %d given" % len(args))
> TypeError: Expected 2 or 3 arguments, 1 given
>
> I tried several FITS files but I got the same errors. Do you have any
> idea?
>
> Regards,
>
> OKUMURA, Akira oxon at ceres.phys.s.u-tokyo.ac.jp
> Department of Physics, The University of Tokyo
> 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033
> TEL/FAX +81 3-5841-4173/4059
> Skype : okumura.akira
>
> On 2009/05/06, at 20:47, Nadezhda Dencheva wrote:
>
>
>> Hi,
>>
>> You are running an older version of pywcs.
>> I believe an upgrade to the latest release will fix this.
>>
>>
>> Nadia Dencheva
>>
>> ---- Original message ----
>>
>>> Date: Wed, 6 May 2009 15:30:23 +0900
>>> From: astropy-bounces at scipy.org (on behalf of "OKUMURA, Akira" <oxon at ceres.phys.s.u-tokyo.ac.jp
>>>
>>>> )
>>>>
>>> Subject: [AstroPy] pywcs problem on Linux
>>> To: astropy at scipy.org
>>>
>>> Hello all,
>>>
>>> I have installed pywcs in two environments.
>>> (1) Scientific Linux 4.7 (64 bit)
>>> + Python 2.5.4 (r254:67916, May 6 2009, 07:09:17)
>>> + GCC 3.4.6 20060404 (Red Hat 3.4.6-10)] on linux2
>>> + pyfits-1.3
>>> + pywcs-1.3a1-4.3
>>> (2) Red Hat Enterprise Linux 4 (32 bit).
>>> + Python 2.5.1 (r251:54863, Aug 24 2007, 16:22:50)
>>> + GCC 3.4.3 (TWW)] on linux2
>>> + pywcs-1.3a1-4.3
>>> + pyfits-2.1.1
>>>
>>> But I got following errors even though it runs properly on Mac OS X
>>> 10.5.
>>> === Error on (1) ===
>>>
>>>>>> hdulist = pyfits.open("cmap.fits")
>>>>>> wcs = pywcs.WCS(hdulist[0].header)
>>>>>>
>>> zsh: segmentation fault python
>>>
>>> === Error on (2) ===
>>>
>>>>>> hdulist = pyfits.open("cmap.fits")
>>>>>> wcs = pywcs.WCS(hdulist[0].header)
>>>>>>
>>> Traceback (most recent call last):
>>> File "<stdin>", line 1, in <module>
>>> File "/u/gl/oxon/tmp/lib/python2.5/site-packages/pywcs/pywcs.py",
>>> line 155, in __init__
>>> self.footprint = self._calcFootprint(header)
>>> File "/u/gl/oxon/tmp/lib/python2.5/site-packages/pywcs/pywcs.py",
>>> line 181, in _calcFootprint
>>> return self.all_pix2sky(corners)
>>> File "/u/gl/oxon/tmp/lib/python2.5/site-packages/pywcs/pywcs.py",
>>> line 307, in all_pix2sky
>>> return self._array_converter(self._all_pix2sky, *args, **kwargs)
>>> File "/u/gl/oxon/tmp/lib/python2.5/site-packages/pywcs/pywcs.py",
>>> line 294, in _array_converter
>>> return func(args[0], **kwargs)
>>> SystemError: Python/getargs.c:1246: bad argument to internal function
>>>
>>> Is there any tips on running pywcs with Linux ?
>>>
>>> The FITS is as follows.
>>>
>>>
>>>>>> print hdulist[0].header
>>>>>>
>>> SIMPLE = T / File conforms to NOST standard
>>> BITPIX = 32 / Bits per pixel
>>> NAXIS = 2 / No data is associated with this
>>> header
>>> NAXIS1 = 160 / Length of data axis 1
>>> NAXIS2 = 160 / Length of data axis 2
>>> EXTEND = T / Extensions may be present
>>> COMMENT FITS (Flexible Image Transport System) format is defined in
>>> 'Astronomy
>>> COMMENT and Astrophysics', volume 376, page 359; bibcode:
>>> 2001A&A...
>>> 376..359H
>>> CTYPE1 = 'GLON-AIT' / RA---%%%, %%% represents the
>>> projection method
>>> CRPIX1 = 80.5 / Reference pixel
>>> CRVAL1 = 211. / RA at the reference pixel
>>> CDELT1 = -0.25 / X-axis incr per pixel of physical
>>> coord at posi
>>> CUNIT1 = 'deg ' / Physical unit of X-axis
>>> CTYPE2 = 'GLAT-AIT' / DEC---%%%, %%% represents the
>>> projection method
>>> CRPIX2 = 80.5 / Reference pixel
>>> CRVAL2 = -17. / DEC at the reference pixel
>>> CDELT2 = 0.25 / Y-axis incr per pixel of physical
>>> coord at posi
>>> CUNIT2 = 'deg ' / Physical unit of Y-axis
>>> CROTA2 = 0. / Image rotation (deg)
>>> DATE = '2009-04-01T15:34:22' / file creation date (YYYY-MM-
>>> DDThh:mm:ss U
>>> FILENAME= 'cmap.fits' /
>>> TELESCOP= 'GLAST ' / name of telescope generating data
>>> INSTRUME= 'LAT ' / name of instrument generating data
>>> DATE-OBS= '2009-03-11T21:33:18.000' / start date and time of the
>>> observation (U
>>> DATE-END= '2009-03-17T16:26:38.000' / end date and time of the
>>> observation (UTC
>>> NDSKEYS = 5
>>> EQUINOX = 2000. / Equinox of RA & DEC specifications
>>> OBSERVER= 'Peter Michelson' / GLAST/LAT PI
>>> CREATOR = 'gtbin ' / Software and version creating file
>>> HISTORY LatCountMapTemplate,v 1.3 2005/04/05
>>> 21:06:39 peachey
>>> HISTORY Exp
>>> CHECKSUM= 'c8JZf8JXc8JXc8JX' / HDU checksum updated
>>> 2009-04-01T06:34:22
>>> DATASUM = '182648 ' / data unit checksum updated
>>> 2009-04-01T06:34:22
>>> DSTYP1 = 'TIME '
>>> DSUNI1 = 's '
>>> DSVAL1 = 'TABLE '
>>> DSREF1 = ':GTI '
>>> DSTYP2 = 'POS(RA,DEC)'
>>> DSUNI2 = 'deg '
>>> DSVAL2 = 'CIRCLE(86.81257852,-6.005536809,20)'
>>> DSTYP3 = 'CTBCLASSLEVEL'
>>> DSUNI3 = 'dimensionless'
>>> DSVAL3 = '3: '
>>> DSTYP4 = 'ENERGY '
>>> DSUNI4 = 'MeV '
>>> DSVAL4 = '200:20000'
>>> DSTYP5 = 'ZENITH_ANGLE'
>>> DSUNI5 = 'deg '
>>> DSVAL5 = '0:100 '
>>>
>>>
>>> Regards,
>>>
>>> OKUMURA, Akira oxon at ceres.phys.s.u-tokyo.ac.jp
>>> Department of Physics, The University of Tokyo
>>> 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033
>>> TEL/FAX +81 3-5841-4173/4059
>>> Skype : okumura.akira
>>>
>>> _______________________________________________
>>> AstroPy mailing list
>>> AstroPy at scipy.org
>>> http://mail.scipy.org/mailman/listinfo/astropy
>>>
>
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--
Michael Droettboom
Science Software Branch
Operations and Engineering Division
Space Telescope Science Institute
Operated by AURA for NASA
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