[SciPy-User] Read matrix from matrix market format file
Valène Pellissier
Valene.Pellissier at cedrat.com
Thu Jun 6 12:48:12 EDT 2013
Sorry I found out the problem. Blanks ...
Do you know an easy and fast way to delete the useless blanks, and still keep the ones to seperate the variables ?
My file looks like that :
%%MatrixMarket matrix coordinate real symmetric
8176 8176 50823
1 1 1.00000000000000
2 1 3.217746558609426E-002
3 1 -5.773555991094832E-002
15 1 5.773555991029918E-002
16 1 -2.670364769384909E-002
50 1 2.666074407522187E-002
51 1 0.203221218356395
58 1 -0.203221218355300
65 1 5.555410250046564E-004
66 1 0.147340602419819
69 1 -3.939755803017718E-003
122 1 -0.147340602419818
123 1 3.939755803017390E-003
124 1 -5.359343846466105E-004
125 1 -0.175978855055765
3897 1 1.844398988268397E-003
3931 1 -6.804457799602319E-004
4146 1 6.804457843076172E-004
Thanks a lot for you help !
[cid:image001.jpg at 01CE62E6.63D1D860]Valène PELLISSIER - R&D Engineer
CEDRAT S.A.
15 Chemin de Malacher - Inovallée - 38246 MEYLAN cedex - FRANCE
Phone: +33 (0)4 76 90 50 45 - Fax: +33 (0)4 56 38 08 30
valene.pellissier at cedrat.com<mailto:valene.pellissier at cedrat.com> - www.cedrat.com<http://www.cedrat.com> [youtube] <http://www.youtube.com/user/CEDRATSOFTWARE> <http://www.linkedin.com/company/cedrat?trk=tabs_biz_home> [youtube] <http://www.facebook.com/pages/CEDRAT/174895345915549?sk=wall>
De : scipy-user-bounces at scipy.org [mailto:scipy-user-bounces at scipy.org] De la part de Roban Kramer
Envoyé : jeudi 6 juin 2013 15:47
À : SciPy Users List
Objet : Re: [SciPy-User] Read matrix from matrix market format file
Can you send the first few lines of the my_matrix.mtx file?
On Thu, Jun 6, 2013 at 9:05 AM, Valène Pellissier <Valene.Pellissier at cedrat.com<mailto:Valene.Pellissier at cedrat.com>> wrote:
Hi,
I've got some problems reading a matrix from a matrix market format file.
I have Python 3.2 and installed Numpy 1.7.1, Scipy 0.12.0 and matplotlib 1.2.1 on Windows 64.
I tried the scipy.io.mmread function but got an error I don't understand.
>>> B=scipy.io.mmread("my_matrix.mtx")
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "C:\Python32\lib\site-packages\scipy\io\mmio.py", line 70, in mmread
return MMFile().read(source)
File "C:\Python32\lib\site-packages\scipy\io\mmio.py", line 301, in read
self._parse_header(stream)
File "C:\Python32\lib\site-packages\scipy\io\mmio.py", line 337, in _parse_he
der
self.__class__.info(stream)
File "C:\Python32\lib\site-packages\scipy\io\mmio.py", line 208, in info
raise ValueError("Header line not of length 3: " + line)
It is a big matrix.
Is there someone who has a clue about what I'm doing wrong ?
Your help will be much appreciated.
Thanks
Valene
[cid:image001.jpg at 01CE62E6.63D1D860]Valène PELLISSIER - R&D Engineer
CEDRAT S.A.
15 Chemin de Malacher - Inovallée - 38246 MEYLAN cedex - FRANCE
Phone: +33 (0)4 76 90 50 45<tel:%2B33%20%280%294%2076%2090%2050%2045> - Fax: +33 (0)4 56 38 08 30<tel:%2B33%20%280%294%2056%2038%2008%2030>
valene.pellissier at cedrat.com<mailto:valene.pellissier at cedrat.com> - www.cedrat.com<http://www.cedrat.com> [youtube] <http://www.youtube.com/user/CEDRATSOFTWARE> [youtube] <http://www.facebook.com/pages/CEDRAT/174895345915549?sk=wall>
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