[SciPy-user] Error when install SciPy on OS X 10.5.6

Tue May 12 19:25:34 EDT 2009

Mac OS X 10.5.6

svn current version of scipy

gcc --version
i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5490)

gfortran --version
GNU Fortran (GCC) 4.3.3

Warning: No configuration returned, assuming unavailable.
blas_opt_info:
   FOUND:
     extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
     define_macros = [('NO_ATLAS_INFO', 3)]
     extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/ 
vecLib.framework/Headers']

lapack_opt_info:
   FOUND:
     extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
     define_macros = [('NO_ATLAS_INFO', 3)]
     extra_compile_args = ['-msse3']

umfpack_info:
   libraries umfpack not found in /System/Library/Frameworks/ 
Python.framework/Versions/2.5/lib
   libraries umfpack not found in /usr/local/lib
   libraries umfpack not found in /usr/lib
   libraries umfpack not found in /sw/lib
/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/ 
python/numpy/distutils/system_info.py:401: UserWarning:
     UMFPACK sparse solver (http://www.cise.ufl.edu/research/sparse/umfpack/ 
)
     not found. Directories to search for the libraries can be  
specified in the
     numpy/distutils/site.cfg file (section [umfpack]) or by setting
     the UMFPACK environment variable.
   warnings.warn(self.notfounderror.__doc__)
   NOT AVAILABLE

running build_src
building py_modules sources
building library "dfftpack" sources
building library "fftpack" sources
building library "linpack_lite" sources
building library "mach" sources
building library "quadpack" sources
building library "odepack" sources
building library "dop" sources
building library "fitpack" sources
building library "odrpack" sources
building library "minpack" sources
building library "rootfind" sources
building library "superlu_src" sources
building library "arpack" sources
building library "sc_c_misc" sources
building library "sc_cephes" sources
building library "sc_mach" sources
building library "sc_toms" sources
building library "sc_amos" sources
building library "sc_cdf" sources
building library "sc_specfun" sources
building library "statlib" sources
building extension "scipy.cluster._vq" sources
building extension "scipy.cluster._hierarchy_wrap" sources
building extension "scipy.fftpack._fftpack" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.fftpack.convolve" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.integrate._quadpack" sources
building extension "scipy.integrate._odepack" sources
building extension "scipy.integrate.vode" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.integrate.dop" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.interpolate._fitpack" sources
building extension "scipy.interpolate.dfitpack" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
   adding 'build/src.macosx-10.5-i386-2.5/scipy/interpolate/src/ 
dfitpack-f2pywrappers.f' to sources.
building extension "scipy.interpolate._interpolate" sources
building extension "scipy.io.numpyio" sources
building extension "scipy.lib.blas.fblas" sources
f2py options: ['skip:', ':']
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
   adding 'build/src.macosx-10.5-i386-2.5/build/src.macosx-10.5- 
i386-2.5/scipy/lib/blas/fblas-f2pywrappers.f' to sources.
building extension "scipy.lib.blas.cblas" sources
   adding 'build/src.macosx-10.5-i386-2.5/scipy/lib/blas/cblas.pyf' to  
sources.
f2py options: ['skip:', ':']
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.lib.lapack.flapack" sources
f2py options: ['skip:', ':']
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.lib.lapack.clapack" sources
   adding 'build/src.macosx-10.5-i386-2.5/scipy/lib/lapack/ 
clapack.pyf' to sources.
f2py options: ['skip:', ':']
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.lib.lapack.calc_lwork" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.lib.lapack.atlas_version" sources
building extension "scipy.linalg.fblas" sources
   adding 'build/src.macosx-10.5-i386-2.5/scipy/linalg/fblas.pyf' to  
sources.
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
   adding 'build/src.macosx-10.5-i386-2.5/build/src.macosx-10.5- 
i386-2.5/scipy/linalg/fblas-f2pywrappers.f' to sources.
building extension "scipy.linalg.cblas" sources
   adding 'build/src.macosx-10.5-i386-2.5/scipy/linalg/cblas.pyf' to  
sources.
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.linalg.flapack" sources
   adding 'build/src.macosx-10.5-i386-2.5/scipy/linalg/flapack.pyf' to  
sources.
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
   adding 'build/src.macosx-10.5-i386-2.5/build/src.macosx-10.5- 
i386-2.5/scipy/linalg/flapack-f2pywrappers.f' to sources.
building extension "scipy.linalg.clapack" sources
   adding 'build/src.macosx-10.5-i386-2.5/scipy/linalg/clapack.pyf' to  
sources.
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.linalg._flinalg" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.linalg.calc_lwork" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.linalg.atlas_version" sources
building extension "scipy.odr.__odrpack" sources
building extension "scipy.optimize._minpack" sources
building extension "scipy.optimize._zeros" sources
building extension "scipy.optimize._lbfgsb" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.optimize.moduleTNC" sources
building extension "scipy.optimize._cobyla" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.optimize.minpack2" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.optimize._slsqp" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.optimize._nnls" sources
f2py options: []
   adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
building extension "scipy.signal.sigtools" sources
conv_template:> build/src.macosx-10.5-i386-2.5/scipy/signal/lfilter.inc
Traceback (most recent call last):
   File "setup.py", line 158, in <module>
     setup_package()
   File "setup.py", line 150, in setup_package
     configuration=configuration )
   File "/System/Library/Frameworks/Python.framework/Versions/2.5/ 
Extras/lib/python/numpy/distutils/core.py", line 174, in setup
     return old_setup(**new_attr)
   File "/System/Library/Frameworks/Python.framework/Versions/2.5/lib/ 
python2.5/distutils/core.py", line 151, in setup
     dist.run_commands()
   File "/System/Library/Frameworks/Python.framework/Versions/2.5/lib/ 
python2.5/distutils/dist.py", line 974, in run_commands
     self.run_command(cmd)
   File "/System/Library/Frameworks/Python.framework/Versions/2.5/lib/ 
python2.5/distutils/dist.py", line 994, in run_command
     cmd_obj.run()
   File "/System/Library/Frameworks/Python.framework/Versions/2.5/ 
Extras/lib/python/numpy/distutils/command/build_src.py", line 87, in run
     self.build_sources()
   File "/System/Library/Frameworks/Python.framework/Versions/2.5/ 
Extras/lib/python/numpy/distutils/command/build_src.py", line 106, in  
build_sources
     self.build_extension_sources(ext)
   File "/System/Library/Frameworks/Python.framework/Versions/2.5/ 
Extras/lib/python/numpy/distutils/command/build_src.py", line 214, in  
build_extension_sources
     sources = self.template_sources(sources, ext)
   File "/System/Library/Frameworks/Python.framework/Versions/2.5/ 
Extras/lib/python/numpy/distutils/command/build_src.py", line 322, in  
template_sources
     outstr = process_c_file(source)
   File "/System/Library/Frameworks/Python.framework/Versions/2.5/ 
Extras/lib/python/numpy/distutils/conv_template.py", line 191, in  
process_file
     % (sourcefile, process_str(''.join(lines))))
   File "/System/Library/Frameworks/Python.framework/Versions/2.5/ 
Extras/lib/python/numpy/distutils/conv_template.py", line 156, in  
process_str
     newstr[sub[0]:sub[1]], sub[4])
   File "/System/Library/Frameworks/Python.framework/Versions/2.5/ 
Extras/lib/python/numpy/distutils/conv_template.py", line 120, in  
expand_sub
     for k in range(numsubs):
TypeError: range() integer end argument expected, got NoneType.

Chensong

====================================
Mathematics Department
Penn State University, State College, PA
email: zhangchensong at gmail.com
web: zhangcs.wordpress.com
====================================