[SciPy-user] Fwd: Numpy.linalg not linking dgesdd: threaded ATLAS, AMD 64 bit, Fedora-5
Anand Patil
anand at cse.ucsc.edu
Sun May 27 17:42:03 EDT 2007
Hi all,
I'm having trouble understanding the following error; it looks like numpy's
setup.py is finding my ATLAS installation all right, but when linalg it
tries to load the non-ATLAS function dgesdd it has problems. I tried adding
extra_compile_args and extra_link_args = -fPIC to the
add_extension('lapack_lite'...) portion of linalg's setup.py to no avail.
threaded ATLAS, AMD 64 bit, Fedora-5; numpy source checked out just now.
Thanks in advance,
Anand
Problem:
In [2]: from numpy.linalg import *
---------------------------------------------------------------------------
exceptions.ImportError Traceback (most recent
call last)
/projects/mangellab/anand/<ipython console>
/projects/mangellab/PythonPkgs/lib64/python/numpy/__init__.py
41 import lib
42 from lib import *
---> 43 import linalg
44 import fft
45 import random
/projects/mangellab/PythonPkgs/lib64/python/numpy/linalg/__init__.py
2 from info import __doc__
3
----> 4 from linalg import *
5
6 def test(level=1, verbosity=1):
/projects/mangellab/PythonPkgs/lib64/python/numpy/linalg/linalg.py
23 isfinite
24 from numpy.lib import triu
---> 25 from numpy.linalg import lapack_lite
26
27 fortran_int = intc
ImportError:
/projects/mangellab/PythonPkgs/lib64/python/numpy/linalg/lapack_lite.so:
undefined symbol: dgesdd_
My site.cfg file:
[blas_opt]
libraries = ptf77blas, ptcblas, atlas
library_dirs = /projects/mangellab/anand/ATLAS/lib/Linux_HAMMER64SSE2_4
include_dirs = /projects/mangellab/anand/ATLAS/include
[lapack_opt]
libraries = lapack, ptf77blas, ptcblas, atlas
library_dirs = /projects/mangellab/anand/ATLAS/lib/Linux_HAMMER64SSE2_4
include_dirs = /projects/mangellab/anand/ATLAS/
setup.py output:
[anand at stardance numpy]$ python setup.py install
--home=/projects/mangellab/PythonPkgs
Running from numpy source directory.
F2PY Version 2_3830
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs =
['/projects/mangellab/anand/ATLAS/lib/Linux_HAMMER64SSE2_4']
language = c
customize GnuFCompiler
Found executable /usr/bin/g77
Found executable /usr/bin/g77
customize GnuFCompiler
Found executable /usr/bin/g77
Found executable /usr/bin/g77
customize GnuFCompiler using config
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-c'
gcc: _configtest.c
gcc -pthread _configtest.o
-L/projects/mangellab/anand/ATLAS/lib/Linux_HAMMER64SSE2_4 -lptf77blas
-lptcblas -latlas -o _configtest
ATLAS version 3.6.0 built by anand on Sun May 27 11:33:38 PDT 2007:
UNAME : Linux stardance.cse.ucsc.edu 2.6.20-1.2300.fc5 #1 SMP Sun Mar
11 19:29:01 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux
INSTFLG :
MMDEF :
ARCHDEF :
F2CDEFS : -DAdd__ -DStringSunStyle
CACHEEDGE: 524288
F77 : /usr/bin/g77, version GNU Fortran (GCC 3.2.3 20030502 (Red Hat
Linux 3.2.3-56.fc5)) 3.2.3 20030502 (Red Hat Linux 3.2.3-13)
F77FLAGS : -fPIC -fomit-frame-pointer -O -m64
CC : /usr/bin/gcc, version gcc (GCC) 4.1.1 20070105 (Red Hat
4.1.1-51)
CC FLAGS : -fPIC -fomit-frame-pointer -O -mfpmath=387 -m64
MCC : /usr/bin/gcc, version gcc (GCC) 4.1.1 20070105 (Red Hat
4.1.1-51)
MCCFLAGS : -fPIC -fomit-frame-pointer -O -mfpmath=387 -m64
success!
removing: _configtest.c _configtest.o _configtest
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs =
['/projects/mangellab/anand/ATLAS/lib/Linux_HAMMER64SSE2_4']
language = c
define_macros = [('ATLAS_INFO', '"\\"3.6.0\\""')]
lapack_opt_info:
lapack_mkl_info:
mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries lapack_atlas not found in
/projects/mangellab/anand/ATLAS/lib/Linux_HAMMER64SSE2_4
numpy.distutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
/projects/mangellab/anand/numpy/numpy/distutils/system_info.py:943:
UserWarning:
*********************************************************************
Lapack library (from ATLAS) is probably incomplete:
size of
/projects/mangellab/anand/ATLAS/lib/Linux_HAMMER64SSE2_4/liblapack.a is 485k
(expected >4000k)
Follow the instructions in the KNOWN PROBLEMS section of the file
numpy/INSTALL.txt.
*********************************************************************
warnings.warn(message)
Setting PTATLAS=ATLAS
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs =
['/projects/mangellab/anand/ATLAS/lib/Linux_HAMMER64SSE2_4']
language = c
customize GnuFCompiler
Found executable /usr/bin/g77
Found executable /usr/bin/g77
customize GnuFCompiler
Found executable /usr/bin/g77
Found executable /usr/bin/g77
customize GnuFCompiler using config
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-c'
gcc: _configtest.c
gcc -pthread _configtest.o
-L/projects/mangellab/anand/ATLAS/lib/Linux_HAMMER64SSE2_4 -llapack
-lptf77blas -lptcblas -latlas -o _configtest
ATLAS version 3.6.0 built by anand on Sun May 27 11:33:38 PDT 2007:
UNAME : Linux stardance.cse.ucsc.edu 2.6.20-1.2300.fc5 #1 SMP Sun Mar
11 19:29:01 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux
INSTFLG :
MMDEF :
ARCHDEF :
F2CDEFS : -DAdd__ -DStringSunStyle
CACHEEDGE: 524288
F77 : /usr/bin/g77, version GNU Fortran (GCC 3.2.3 20030502 (Red Hat
Linux 3.2.3-56.fc5)) 3.2.3 20030502 (Red Hat Linux 3.2.3-13)
F77FLAGS : -fPIC -fomit-frame-pointer -O -m64
CC : /usr/bin/gcc, version gcc (GCC) 4.1.1 20070105 (Red Hat
4.1.1-51)
CC FLAGS : -fPIC -fomit-frame-pointer -O -mfpmath=387 -m64
MCC : /usr/bin/gcc, version gcc (GCC) 4.1.1 20070105 (Red Hat
4.1.1-51)
MCCFLAGS : -fPIC -fomit-frame-pointer -O -mfpmath=387 -m64
success!
removing: _configtest.c _configtest.o _configtest
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs =
['/projects/mangellab/anand/ATLAS/lib/Linux_HAMMER64SSE2_4']
language = c
define_macros = [('ATLAS_INFO', '"\\" 3.6.0\\""')]
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler
options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler
options
running build_src
building py_modules sources
creating build
creating build/src.linux-x86_64-2.4
creating build/src.linux-x86_64-2.4/numpy
creating build/src.linux-x86_64-2.4/numpy/distutils
building extension " numpy.core.multiarray" sources
creating build/src.linux-x86_64-2.4/numpy/core
Generating build/src.linux-x86_64-2.4/numpy/core/config.h
customize GnuFCompiler
Found executable /usr/bin/g77
Found executable /usr/bin/g77
customize GnuFCompiler
Found executable /usr/bin/g77
Found executable /usr/bin/g77
customize GnuFCompiler using config
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-I/usr/include/python2.4 -Inumpy/core/src
-Inumpy/core/include -I/usr/include/python2.4 -c'
gcc: _configtest.c
_configtest.c: In function 'main':
_configtest.c:50: warning: format '%d' expects type 'int', but argument 4
has type 'long unsigned int'
_configtest.c:57: warning: format '%d' expects type 'int', but argument 4
has type 'long unsigned int'
_configtest.c:72: warning: format '%d' expects type 'int', but argument 4
has type 'long unsigned int'
gcc -pthread _configtest.o -L/usr/local/lib -L/usr/lib -o _configtest
/usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for
-lpthread
/usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for
-lpthread
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
/usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
_configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
gcc -pthread _configtest.o -o _configtest
_configtest.o: In function `main':
/projects/mangellab/anand/numpy/_configtest.c:5: undefined reference to
`exp'
collect2: ld returned 1 exit status
_configtest.o: In function `main':
/projects/mangellab/anand/numpy/_configtest.c:5: undefined reference to
`exp'
collect2: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
gcc -pthread _configtest.o -lm -o _configtest
_configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
_configtest.c: In function 'main':
_configtest.c:4: warning: statement with no effect
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
_configtest.c: In function 'main':
_configtest.c:4: warning: statement with no effect
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
_configtest.c: In function 'main':
_configtest.c:4: warning: statement with no effect
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
_configtest.c: In function 'main':
_configtest.c:4: warning: statement with no effect
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
_configtest.c: In function 'main':
_configtest.c:4: warning: statement with no effect
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
_configtest.c: In function 'main':
_configtest.c:4: warning: statement with no effect
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
_configtest.c: In function 'main':
_configtest.c:4: warning: statement with no effect
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
_configtest.c: In function 'main':
_configtest.c:4: warning: statement with no effect
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
_configtest.c: In function 'main':
_configtest.c:4: warning: statement with no effect
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
_configtest.c: In function 'main':
_configtest.c:4: warning: statement with no effect
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
adding 'build/src.linux-x86_64-2.4/numpy/core/config.h' to sources.
executing numpy/core/code_generators/generate_array_api.py
adding 'build/src.linux-x86_64-2.4/numpy/core/__multiarray_api.h' to
sources.
creating build/src.linux-x86_64-2.4/numpy/core/src
conv_template:> build/src.linux-x86_64-2.4/numpy/core/src/scalartypes.inc
adding 'build/src.linux-x86_64-2.4/numpy/core/src' to include_dirs.
conv_template:> build/src.linux-x86_64-2.4/numpy/core/src/arraytypes.inc
numpy.core - nothing done with h_files= ['build/src.linux-x86_64-
2.4/numpy/core/src/scalartypes.inc',
'build/src.linux-x86_64-2.4/numpy/core/src/arraytypes.inc',
'build/src.linux-x86_64-2.4/numpy/core/config.h', 'build/src.linux-x86_64-
2.4/numpy/core/__multiarray_api.h']
building extension "numpy.core.umath" sources
adding 'build/src.linux-x86_64-2.4/numpy/core/config.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
adding 'build/src.linux-x86_64- 2.4/numpy/core/__ufunc_api.h' to sources.
conv_template:> build/src.linux-x86_64-2.4/numpy/core/src/umathmodule.c
adding 'build/src.linux-x86_64-2.4/numpy/core/src' to include_dirs.
numpy.core - nothing done with h_files= ['build/src.linux-x86_64-
2.4/numpy/core/src/scalartypes.inc',
'build/src.linux-x86_64-2.4/numpy/core/src/arraytypes.inc',
'build/src.linux-x86_64-2.4/numpy/core/config.h', 'build/src.linux-x86_64-
2.4/numpy/core/__ufunc_api.h']
building extension "numpy.core._sort" sources
adding 'build/src.linux-x86_64-2.4/numpy/core/config.h' to sources.
executing numpy/core/code_generators/generate_array_api.py
adding 'build/src.linux-x86_64- 2.4/numpy/core/__multiarray_api.h' to
sources.
conv_template:> build/src.linux-x86_64-2.4/numpy/core/src/_sortmodule.c
numpy.core - nothing done with h_files=
['build/src.linux-x86_64-2.4/numpy/core/config.h',
'build/src.linux-x86_64- 2.4/numpy/core/__multiarray_api.h']
building extension "numpy.core.scalarmath" sources
adding 'build/src.linux-x86_64-2.4/numpy/core/config.h' to sources.
executing numpy/core/code_generators/generate_array_api.py
adding 'build/src.linux-x86_64-2.4/numpy/core/__multiarray_api.h' to
sources.
executing numpy/core/code_generators/generate_ufunc_api.py
adding 'build/src.linux-x86_64-2.4/numpy/core/__ufunc_api.h' to sources.
conv_template:> build/src.linux-x86_64-2.4/numpy/core/src/scalarmathmodule.c
numpy.core - nothing done with h_files=
['build/src.linux-x86_64-2.4/numpy/core/config.h',
'build/src.linux-x86_64-2.4/numpy/core/__multiarray_api.h',
'build/src.linux-x86_64- 2.4/numpy/core/__ufunc_api.h']
building extension "numpy.core._dotblas" sources
adding 'numpy/core/blasdot/_dotblas.c' to sources.
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
creating build/src.linux-x86_64- 2.4/numpy/linalg
adding 'numpy/linalg/lapack_litemodule.c' to sources.
building extension "numpy.random.mtrand" sources
creating build/src.linux-x86_64-2.4/numpy/random
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/include/python2.4 -c'
gcc: _configtest.c
_configtest.c:7:2: error: #error No _WIN32
_configtest.c:7:2: error: #error No _WIN32
failure.
removing: _configtest.c _configtest.o
building data_files sources
running build_py
creating build/lib.linux-x86_64-2.4
creating build/lib.linux-x86_64-2.4/numpy
copying numpy/_import_tools.py -> build/lib.linux-x86_64- 2.4/numpy
copying numpy/ctypeslib.py -> build/lib.linux-x86_64-2.4/numpy
copying numpy/__init__.py -> build/lib.linux-x86_64-2.4/numpy
copying numpy/setup.py -> build/lib.linux-x86_64-2.4/numpy
copying numpy/matlib.py -> build/lib.linux-x86_64- 2.4/numpy
copying numpy/add_newdocs.py -> build/lib.linux-x86_64-2.4/numpy
copying numpy/dual.py -> build/lib.linux-x86_64-2.4/numpy
copying numpy/version.py -> build/lib.linux-x86_64-2.4/numpy
copying build/src.linux-x86_64- 2.4/numpy/__config__.py ->
build/lib.linux-x86_64-2.4/numpy
creating build/lib.linux-x86_64-2.4/numpy/distutils
copying numpy/distutils/misc_util.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying numpy/distutils/core.py -> build/lib.linux-x86_64- 2.4
/numpy/distutils
copying numpy/distutils/__init__.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying numpy/distutils/info.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying numpy/distutils/mingw32ccompiler.py -> build/lib.linux-x86_64- 2.4
/numpy/distutils
copying numpy/distutils/line_endings.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying numpy/distutils/from_template.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying numpy/distutils/system_info.py -> build/lib.linux-x86_64- 2.4
/numpy/distutils
copying numpy/distutils/conv_template.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying numpy/distutils/setup.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying numpy/distutils/cpuinfo.py -> build/lib.linux-x86_64- 2.4
/numpy/distutils
copying numpy/distutils/lib2def.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying numpy/distutils/intelccompiler.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying numpy/distutils/extension.py -> build/lib.linux-x86_64- 2.4
/numpy/distutils
copying numpy/distutils/interactive.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying numpy/distutils/ccompiler.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying numpy/distutils/__version__.py -> build/lib.linux-x86_64- 2.4
/numpy/distutils
copying numpy/distutils/log.py -> build/lib.linux-x86_64-2.4/numpy/distutils
copying numpy/distutils/unixccompiler.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying numpy/distutils/exec_command.py -> build/lib.linux-x86_64- 2.4
/numpy/distutils
copying numpy/distutils/environment.py -> build/lib.linux-x86_64-2.4
/numpy/distutils
copying build/src.linux-x86_64-2.4/numpy/distutils/__config__.py ->
build/lib.linux-x86_64-2.4/numpy/distutils
creating build/lib.linux-x86_64-2.4/numpy/distutils/command
copying numpy/distutils/command/config_compiler.py ->
build/lib.linux-x86_64-2.4/numpy/distutils/command
copying numpy/distutils/command/build_clib.py -> build/lib.linux-x86_64- 2.4
/numpy/distutils/command
copying numpy/distutils/command/egg_info.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/command
copying numpy/distutils/command/__init__.py ->
build/lib.linux-x86_64-2.4/numpy/distutils/command
copying numpy/distutils/command/build.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/command
copying numpy/distutils/command/build_ext.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/command
copying numpy/distutils/command/install_data.py -> build/lib.linux-x86_64-
2.4/numpy/distutils/command
copying numpy/distutils/command/install_headers.py ->
build/lib.linux-x86_64-2.4/numpy/distutils/command
copying numpy/distutils/command/bdist_rpm.py ->
build/lib.linux-x86_64-2.4/numpy/distutils/command
copying numpy/distutils/command/config.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/command
copying numpy/distutils/command/build_scripts.py -> build/lib.linux-x86_64-
2.4/numpy/distutils/command
copying numpy/distutils/command/build_src.py -> build/lib.linux-x86_64- 2.4
/numpy/distutils/command
copying numpy/distutils/command/install.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/command
copying numpy/distutils/command/sdist.py ->
build/lib.linux-x86_64-2.4/numpy/distutils/command
copying numpy/distutils/command/build_py.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/command
creating build/lib.linux-x86_64-2.4/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/__init__.py -> build/lib.linux-x86_64- 2.4
/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/mips.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/gnu.py ->
build/lib.linux-x86_64-2.4/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/intel.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/vast.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/absoft.py -> build/lib.linux-x86_64- 2.4
/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/none.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/compaq.py ->
build/lib.linux-x86_64-2.4/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/lahey.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/g95.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/hpux.py -> build/lib.linux-x86_64- 2.4
/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/nag.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/sun.py ->
build/lib.linux-x86_64-2.4/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/pg.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/fcompiler
copying numpy/distutils/fcompiler/ibm.py -> build/lib.linux-x86_64-2.4
/numpy/distutils/fcompiler
creating build/lib.linux-x86_64- 2.4/numpy/testing
copying numpy/testing/numpytest.py -> build/lib.linux-x86_64-2.4
/numpy/testing
copying numpy/testing/info.py -> build/lib.linux-x86_64-2.4/numpy/testing
copying numpy/testing/__init__.py -> build/lib.linux-x86_64- 2.4
/numpy/testing
copying numpy/testing/setup.py -> build/lib.linux-x86_64-2.4/numpy/testing
copying numpy/testing/utils.py -> build/lib.linux-x86_64-2.4/numpy/testing
creating build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/rules.py -> build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/common_rules.py -> build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/diagnose.py -> build/lib.linux-x86_64- 2.4/numpy/f2py
copying numpy/f2py/info.py -> build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/capi_maps.py -> build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/auxfuncs.py -> build/lib.linux-x86_64- 2.4/numpy/f2py
copying numpy/f2py/cb_rules.py -> build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/__init__.py -> build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/setup.py -> build/lib.linux-x86_64- 2.4/numpy/f2py
copying numpy/f2py/use_rules.py -> build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/func2subr.py -> build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/f2py2e.py -> build/lib.linux-x86_64- 2.4/numpy/f2py
copying numpy/f2py/f90mod_rules.py -> build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/f2py_testing.py -> build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/crackfortran.py -> build/lib.linux-x86_64- 2.4/numpy/f2py
copying numpy/f2py/cfuncs.py -> build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/__version__.py -> build/lib.linux-x86_64-2.4/numpy/f2py
copying numpy/f2py/__svn_version__.py -> build/lib.linux-x86_64- 2.4
/numpy/f2py
creating build/lib.linux-x86_64-2.4/numpy/f2py/lib
copying numpy/f2py/lib/api.py -> build/lib.linux-x86_64-2.4/numpy/f2py/lib
copying numpy/f2py/lib/nary.py -> build/lib.linux-x86_64-2.4/numpy/f2py/lib
copying numpy/f2py/lib/main.py -> build/lib.linux-x86_64-2.4/numpy/f2py/lib
copying numpy/f2py/lib/wrapper_base.py -> build/lib.linux-x86_64-2.4
/numpy/f2py/lib
copying numpy/f2py/lib/__init__.py -> build/lib.linux-x86_64- 2.4
/numpy/f2py/lib
copying numpy/f2py/lib/setup.py -> build/lib.linux-x86_64-2.4/numpy/f2py/lib
copying numpy/f2py/lib/py_wrap.py -> build/lib.linux-x86_64-2.4
/numpy/f2py/lib
copying numpy/f2py/lib/py_wrap_subprogram.py -> build/lib.linux-x86_64- 2.4
/numpy/f2py/lib
copying numpy/f2py/lib/py_wrap_type.py -> build/lib.linux-x86_64-2.4
/numpy/f2py/lib
creating build/lib.linux-x86_64-2.4/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/test_parser.py -> build/lib.linux-x86_64- 2.4
/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/block_statements.py -> build/lib.linux-x86_64-
2.4/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/pattern_tools.py ->
build/lib.linux-x86_64-2.4/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/__init__.py -> build/lib.linux-x86_64-2.4
/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/utils.py -> build/lib.linux-x86_64-2.4
/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/parsefortran.py -> build/lib.linux-x86_64- 2.4
/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/splitline.py -> build/lib.linux-x86_64-2.4
/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/base_classes.py ->
build/lib.linux-x86_64-2.4/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/readfortran.py -> build/lib.linux-x86_64-2.4
/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/api.py -> build/lib.linux-x86_64-2.4
/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/sourceinfo.py -> build/lib.linux-x86_64- 2.4
/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/Fortran2003.py -> build/lib.linux-x86_64-2.4
/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/test_Fortran2003.py -> build/lib.linux-x86_64-
2.4/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/typedecl_statements.py ->
build/lib.linux-x86_64-2.4/numpy/f2py/lib/parser
copying numpy/f2py/lib/parser/statements.py -> build/lib.linux-x86_64-2.4
/numpy/f2py/lib/parser
creating build/lib.linux-x86_64- 2.4/numpy/core
copying numpy/core/arrayprint.py -> build/lib.linux-x86_64-2.4/numpy/core
copying numpy/core/info.py -> build/lib.linux-x86_64-2.4/numpy/core
copying numpy/core/defchararray.py -> build/lib.linux-x86_64- 2.4/numpy/core
copying numpy/core/ma.py -> build/lib.linux-x86_64-2.4/numpy/core
copying numpy/core/__init__.py -> build/lib.linux-x86_64-2.4/numpy/core
copying numpy/core/setup.py -> build/lib.linux-x86_64- 2.4/numpy/core
copying numpy/core/records.py -> build/lib.linux-x86_64-2.4/numpy/core
copying numpy/core/numeric.py -> build/lib.linux-x86_64-2.4/numpy/core
copying numpy/core/_internal.py -> build/lib.linux-x86_64- 2.4/numpy/core
copying numpy/core/memmap.py -> build/lib.linux-x86_64-2.4/numpy/core
copying numpy/core/defmatrix.py -> build/lib.linux-x86_64-2.4/numpy/core
copying numpy/core/fromnumeric.py -> build/lib.linux-x86_64- 2.4/numpy/core
copying numpy/core/numerictypes.py -> build/lib.linux-x86_64-2.4/numpy/core
copying numpy/core/__svn_version__.py -> build/lib.linux-x86_64-2.4
/numpy/core
copying numpy/core/code_generators/generate_array_api.py ->
build/lib.linux-x86_64- 2.4/numpy/core
creating build/lib.linux-x86_64-2.4/numpy/lib
copying numpy/lib/shape_base.py -> build/lib.linux-x86_64-2.4/numpy/lib
copying numpy/lib/scimath.py -> build/lib.linux-x86_64-2.4/numpy/lib
copying numpy/lib/twodim_base.py -> build/lib.linux-x86_64- 2.4/numpy/lib
copying numpy/lib/machar.py -> build/lib.linux-x86_64-2.4/numpy/lib
copying numpy/lib/info.py -> build/lib.linux-x86_64-2.4/numpy/lib
copying numpy/lib/function_base.py -> build/lib.linux-x86_64- 2.4/numpy/lib
copying numpy/lib/__init__.py -> build/lib.linux-x86_64-2.4/numpy/lib
copying numpy/lib/setup.py -> build/lib.linux-x86_64-2.4/numpy/lib
copying numpy/lib/utils.py -> build/lib.linux-x86_64- 2.4/numpy/lib
copying numpy/lib/getlimits.py -> build/lib.linux-x86_64-2.4/numpy/lib
copying numpy/lib/convdtype.py -> build/lib.linux-x86_64-2.4/numpy/lib
copying numpy/lib/arraysetops.py -> build/lib.linux-x86_64- 2.4/numpy/lib
copying numpy/lib/user_array.py -> build/lib.linux-x86_64-2.4/numpy/lib
copying numpy/lib/type_check.py -> build/lib.linux-x86_64-2.4/numpy/lib
copying numpy/lib/index_tricks.py -> build/lib.linux-x86_64- 2.4/numpy/lib
copying numpy/lib/polynomial.py -> build/lib.linux-x86_64-2.4/numpy/lib
copying numpy/lib/ufunclike.py -> build/lib.linux-x86_64-2.4/numpy/lib
creating build/lib.linux-x86_64-2.4/numpy/oldnumeric
copying numpy/oldnumeric/__init__.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/precision.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/misc.py -> build/lib.linux-x86_64- 2.4
/numpy/oldnumeric
copying numpy/oldnumeric/ma.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/rng_stats.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/setup.py -> build/lib.linux-x86_64- 2.4
/numpy/oldnumeric
copying numpy/oldnumeric/ufuncs.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/matrix.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/random_array.py -> build/lib.linux-x86_64- 2.4
/numpy/oldnumeric
copying numpy/oldnumeric/typeconv.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/functions.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/mlab.py -> build/lib.linux-x86_64- 2.4
/numpy/oldnumeric
copying numpy/oldnumeric/user_array.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/compat.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/fft.py -> build/lib.linux-x86_64- 2.4
/numpy/oldnumeric
copying numpy/oldnumeric/fix_default_axis.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/array_printer.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/alter_code1.py -> build/lib.linux-x86_64- 2.4
/numpy/oldnumeric
copying numpy/oldnumeric/alter_code2.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/arrayfns.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
copying numpy/oldnumeric/rng.py -> build/lib.linux-x86_64- 2.4
/numpy/oldnumeric
copying numpy/oldnumeric/linear_algebra.py -> build/lib.linux-x86_64-2.4
/numpy/oldnumeric
creating build/lib.linux-x86_64-2.4/numpy/numarray
copying numpy/numarray/setup.py -> build/lib.linux-x86_64- 2.4
/numpy/numarray
copying numpy/numarray/convolve.py -> build/lib.linux-x86_64-2.4
/numpy/numarray
copying numpy/numarray/ma.py -> build/lib.linux-x86_64-2.4/numpy/numarray
copying numpy/numarray/random_array.py -> build/lib.linux-x86_64- 2.4
/numpy/numarray
copying numpy/numarray/__init__.py -> build/lib.linux-x86_64-2.4
/numpy/numarray
copying numpy/numarray/nd_image.py -> build/lib.linux-x86_64-2.4
/numpy/numarray
copying numpy/numarray/ufuncs.py -> build/lib.linux-x86_64- 2.4
/numpy/numarray
copying numpy/numarray/matrix.py -> build/lib.linux-x86_64-2.4
/numpy/numarray
copying numpy/numarray/functions.py -> build/lib.linux-x86_64-2.4
/numpy/numarray
copying numpy/numarray/mlab.py -> build/lib.linux-x86_64- 2.4/numpy/numarray
copying numpy/numarray/util.py -> build/lib.linux-x86_64-2.4/numpy/numarray
copying numpy/numarray/image.py -> build/lib.linux-x86_64-2.4/numpy/numarray
copying numpy/numarray/fft.py -> build/lib.linux-x86_64- 2.4/numpy/numarray
copying numpy/numarray/numerictypes.py -> build/lib.linux-x86_64-2.4
/numpy/numarray
copying numpy/numarray/alter_code1.py -> build/lib.linux-x86_64-2.4
/numpy/numarray
copying numpy/numarray/compat.py -> build/lib.linux-x86_64- 2.4
/numpy/numarray
copying numpy/numarray/alter_code2.py -> build/lib.linux-x86_64-2.4
/numpy/numarray
copying numpy/numarray/session.py -> build/lib.linux-x86_64-2.4
/numpy/numarray
copying numpy/numarray/linear_algebra.py -> build/lib.linux-x86_64- 2.4
/numpy/numarray
creating build/lib.linux-x86_64-2.4/numpy/fft
copying numpy/fft/info.py -> build/lib.linux-x86_64-2.4/numpy/fft
copying numpy/fft/fftpack.py -> build/lib.linux-x86_64-2.4/numpy/fft
copying numpy/fft/__init__.py -> build/lib.linux-x86_64- 2.4/numpy/fft
copying numpy/fft/helper.py -> build/lib.linux-x86_64-2.4/numpy/fft
copying numpy/fft/setup.py -> build/lib.linux-x86_64-2.4/numpy/fft
creating build/lib.linux-x86_64-2.4/numpy/linalg
copying numpy/linalg/info.py -> build/lib.linux-x86_64- 2.4/numpy/linalg
copying numpy/linalg/__init__.py -> build/lib.linux-x86_64-2.4/numpy/linalg
copying numpy/linalg/setup.py -> build/lib.linux-x86_64-2.4/numpy/linalg
copying numpy/linalg/linalg.py -> build/lib.linux-x86_64- 2.4/numpy/linalg
creating build/lib.linux-x86_64-2.4/numpy/random
copying numpy/random/info.py -> build/lib.linux-x86_64-2.4/numpy/random
copying numpy/random/__init__.py -> build/lib.linux-x86_64-2.4/numpy/random
copying numpy/random/setup.py -> build/lib.linux-x86_64-2.4/numpy/random
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'numpy.core.multiarray' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
creating build/temp.linux-x86_64-2.4
creating build/temp.linux-x86_64-2.4/numpy
creating build/temp.linux-x86_64-2.4/numpy/core
creating build/temp.linux-x86_64-2.4/numpy/core/src
compile options: '-Ibuild/src.linux-x86_64- 2.4/numpy/core/src
-Inumpy/core/include -Ibuild/src.linux-x86_64-2.4/numpy/core
-Inumpy/core/src -Inumpy/core/include -I/usr/include/python2.4 -c'
gcc: numpy/core/src/multiarraymodule.c
gcc -pthread -shared build/temp.linux-x86_64-
2.4/numpy/core/src/multiarraymodule.o
-lm -lm -o build/lib.linux-x86_64-2.4/numpy/core/multiarray.so
building 'numpy.core.umath' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
creating build/temp.linux-x86_64-2.4/build
creating build/temp.linux-x86_64-2.4/build/src.linux-x86_64-2.4
creating build/temp.linux-x86_64-2.4/build/src.linux-x86_64-2.4/numpy
creating build/temp.linux-x86_64- 2.4/build/src.linux-x86_64-2.4/numpy/core
creating build/temp.linux-x86_64-2.4/build/src.linux-x86_64-2.4
/numpy/core/src
compile options: '-Ibuild/src.linux-x86_64-2.4/numpy/core/src
-Inumpy/core/include -Ibuild/src.linux-x86_64- 2.4/numpy/core
-Inumpy/core/src -Inumpy/core/include -I/usr/include/python2.4 -c'
gcc: build/src.linux-x86_64-2.4/numpy/core/src/umathmodule.c
gcc -pthread -shared
build/temp.linux-x86_64-2.4/build/src.linux-x86_64-
2.4/numpy/core/src/umathmodule.o
-lm -o build/lib.linux-x86_64-2.4/numpy/core/umath.so
building 'numpy.core._sort' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/include -Ibuild/src.linux-x86_64-2.4/numpy/core
-Inumpy/core/src -Inumpy/core/include -I/usr/include/python2.4 -c'
gcc: build/src.linux-x86_64-2.4/numpy/core/src/_sortmodule.c
gcc -pthread -shared
build/temp.linux-x86_64-2.4/build/src.linux-x86_64-2.4/numpy/core/src/_sortmodule.o
-lm -o build/lib.linux-x86_64-2.4/numpy/core/_sort.so
building 'numpy.core.scalarmath' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
compile options: '-Inumpy/core/include -Ibuild/src.linux-x86_64- 2.4/numpy/core
-Inumpy/core/src -Inumpy/core/include -I/usr/include/python2.4 -c'
gcc: build/src.linux-x86_64-2.4/numpy/core/src/scalarmathmodule.c
gcc -pthread -shared
build/temp.linux-x86_64-2.4/build/src.linux-x86_64-
2.4/numpy/core/src/scalarmathmodule.o
-lm -o build/lib.linux-x86_64-2.4/numpy/core/scalarmath.so
building 'numpy.core._dotblas' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
creating build/temp.linux-x86_64-2.4/numpy/core/blasdot
compile options: '-DATLAS_INFO="\"3.6.0\"" -Inumpy/core/blasdot
-Inumpy/core/include -Ibuild/src.linux-x86_64-2.4/numpy/core
-Inumpy/core/src -Inumpy/core/include -I/usr/include/python2.4 -c'
gcc: numpy/core/blasdot/_dotblas.c
gcc -pthread -shared build/temp.linux-x86_64-2.4/numpy/core/blasdot/_dotblas.o
-L/projects/mangellab/anand/ATLAS/lib/Linux_HAMMER64SSE2_4 -lptf77blas
-lptcblas -latlas -o build/lib.linux-x86_64- 2.4/numpy/core/_dotblas.so
building 'numpy.lib._compiled_base' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
creating build/temp.linux-x86_64-2.4/numpy/lib
creating build/temp.linux-x86_64-2.4/numpy/lib/src
compile options: '-Inumpy/core/include -Ibuild/src.linux-x86_64-2.4/numpy/core
-Inumpy/core/src -Inumpy/core/include -I/usr/include/python2.4 -c'
gcc: numpy/lib/src/_compiled_base.c
gcc -pthread -shared build/temp.linux-x86_64-2.4/numpy/lib/src/_compiled_base.o
-o build/lib.linux-x86_64-2.4/numpy/lib/_compiled_base.so
building 'numpy.numarray._capi' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
creating build/temp.linux-x86_64-2.4/numpy/numarray
compile options: '-Inumpy/core/include -Ibuild/src.linux-x86_64-2.4/numpy/core
-Inumpy/core/src -Inumpy/core/include -I/usr/include/python2.4 -c'
gcc: numpy/numarray/_capi.c
gcc -pthread -shared build/temp.linux-x86_64-2.4/numpy/numarray/_capi.o -o
build/lib.linux-x86_64-2.4/numpy/numarray/_capi.so
building 'numpy.fft.fftpack_lite' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
creating build/temp.linux-x86_64-2.4/numpy/fft
compile options: '-Inumpy/core/include -Ibuild/src.linux-x86_64-2.4/numpy/core
-Inumpy/core/src -Inumpy/core/include -I/usr/include/python2.4 -c'
gcc: numpy/fft/fftpack_litemodule.c
gcc: numpy/fft/fftpack.c
gcc -pthread -shared build/temp.linux-x86_64-2.4/numpy/fft/fftpack_litemodule.o
build/temp.linux-x86_64-2.4/numpy/fft/fftpack.o -o build/lib.linux-x86_64-
2.4/numpy/fft/fftpack_lite.so
building ' numpy.linalg.lapack_lite' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
creating build/temp.linux-x86_64-2.4/numpy/linalg
compile options: '-DATLAS_INFO="\"3.6.0\"" -Inumpy/core/include
-Ibuild/src.linux-x86_64-2.4/numpy/core -Inumpy/core/src
-Inumpy/core/include -I/usr/include/python2.4 -c'
extra options: '-fPIC'
gcc: numpy/linalg/lapack_litemodule.c
gcc -pthread -shared
build/temp.linux-x86_64-2.4/numpy/linalg/lapack_litemodule.o
-L/projects/mangellab/anand/ATLAS/lib/Linux_HAMMER64SSE2_4 -llapack
-lptf77blas -lptcblas -latlas -o build/lib.linux-x86_64-
2.4/numpy/linalg/lapack_lite.so
-fPIC
building 'numpy.random.mtrand' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fPIC
creating build/temp.linux-x86_64-2.4/numpy/random
creating build/temp.linux-x86_64-2.4/numpy/random/mtrand
compile options: '-Inumpy/core/include -Ibuild/src.linux-x86_64-2.4/numpy/core
-Inumpy/core/src -Inumpy/core/include -I/usr/include/python2.4 -c'
gcc: numpy/random/mtrand/initarray.c
gcc: numpy/random/mtrand/distributions.c
gcc: numpy/random/mtrand/randomkit.c
gcc: numpy/random/mtrand/mtrand.c
gcc -pthread -shared build/temp.linux-x86_64-2.4/numpy/random/mtrand/mtrand.o
build/temp.linux-x86_64- 2.4/numpy/random/mtrand/randomkit.o
build/temp.linux-x86_64-2.4/numpy/random/mtrand/initarray.o
build/temp.linux-x86_64-2.4/numpy/random/mtrand/distributions.o -lm -o
build/lib.linux-x86_64-2.4/numpy/random/mtrand.so
running build_scripts
creating build/scripts.linux-x86_64-2.4
Creating build/scripts.linux-x86_64-2.4/f2py
adding 'build/scripts.linux-x86_64-2.4/f2py' to scripts
changing mode of build/scripts.linux-x86_64-2.4/f2py from 644 to 755
running install_lib
copying build/lib.linux-x86_64-2.4/numpy/__config__.py ->
/projects/mangellab/PythonPkgs/lib64/python/numpy
copying build/lib.linux-x86_64-2.4/numpy/distutils/__config__.py ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/distutils
copying build/lib.linux-x86_64-2.4/numpy/f2py/__svn_version__.py ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/f2py
copying build/lib.linux-x86_64-2.4/numpy/core/__svn_version__.py ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/core
copying build/lib.linux-x86_64-2.4/numpy/core/multiarray.so ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/core
copying build/lib.linux-x86_64-2.4/numpy/core/umath.so ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/core
copying build/lib.linux-x86_64-2.4/numpy/core/_sort.so ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/core
copying build/lib.linux-x86_64-2.4/numpy/core/scalarmath.so ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/core
copying build/lib.linux-x86_64-2.4/numpy/core/_dotblas.so ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/core
copying build/lib.linux-x86_64-2.4/numpy/lib/_compiled_base.so ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/lib
copying build/lib.linux-x86_64-2.4/numpy/numarray/_capi.so ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/numarray
copying build/lib.linux-x86_64-2.4/numpy/fft/fftpack_lite.so ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/fft
copying build/lib.linux-x86_64-2.4/numpy/linalg/lapack_lite.so ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/linalg
copying build/lib.linux-x86_64-2.4/numpy/random/mtrand.so ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/random
byte-compiling
/projects/mangellab/PythonPkgs/lib64/python/numpy/__config__.py to
__config__.pyc
byte-compiling
/projects/mangellab/PythonPkgs/lib64/python/numpy/distutils/__config__.py to
__config__.pyc
byte-compiling
/projects/mangellab/PythonPkgs/lib64/python/numpy/f2py/__svn_version__.py to
__svn_version__.pyc
byte-compiling
/projects/mangellab/PythonPkgs/lib64/python/numpy/core/__svn_version__.py to
__svn_version__.pyc
running install_scripts
copying build/scripts.linux-x86_64-2.4/f2py ->
/projects/mangellab/PythonPkgs/bin
changing mode of /projects/mangellab/PythonPkgs/bin/f2py to 755
running install_data
copying build/src.linux-x86_64-2.4/numpy/core/config.h ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/core/include/numpy
copying build/src.linux-x86_64-2.4/numpy/core/__multiarray_api.h ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/core/include/numpy
copying build/src.linux-x86_64-2.4/numpy/core/multiarray_api.txt ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/core/include/numpy
copying build/src.linux-x86_64-2.4/numpy/core/__ufunc_api.h ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/core/include/numpy
copying build/src.linux-x86_64-2.4/numpy/core/ufunc_api.txt ->
/projects/mangellab/PythonPkgs/lib64/python/numpy/core/include/numpy
[anand at stardance numpy]$
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