[SciPy-user] Problems testing SciPy 0.3.2
Francesc Alted
falted at pytables.org
Fri Oct 15 06:28:36 EDT 2004
Hi,
I've just installed the newest SciPy 0.3.2, and all tests seems to pass
well, except 15 (out of 574). All of them are caused by the same reason,
which ultimately is:
File "/users/exp/alted/bin-i686/lib/python/scipy/special/orthogonal.py", line 91, in get_eig_func
eig = scipy.linalg.eig
AttributeError: 'module' object has no attribute 'eig'
I'm attaching the information required in the INSTALL.txt for reporting bugs.
Cheers,
--
Francesc Alted
-------------- next part --------------
$ python -c 'from f2py2e.diagnose import run;run()'
------
os.name='posix'
------
sys.platform='linux2'
------
sys.version:
2.3.4 (#1, Jul 22 2004, 20:47:54)
[GCC 3.3.2 20031022 (Red Hat Linux 3.3.2-1)]
------
sys.prefix:
/usr
------
sys.path=':/users/exp/alted/bin-i686/lib/python:/usr/lib/python23.zip:/usr/lib/python2.3:/usr/lib/python2.3/plat-linux2:/usr/lib/python2.3/lib-tk:/usr/lib/python2.3/lib-dynload:/usr/lib/python2.3/site-packages:/usr/lib/python2.3/site-packages/Numeric'
------
Found Numeric version '23.3' in /usr/lib/python2.3/site-packages/Numeric/Numeric.pyc
Found numarray version '1.1' in /usr/lib/python2.3/site-packages/numarray/__init__.pyc
Found f2py2e version '2.43.239_1844' in /users/exp/alted/bin-i686/lib/python/f2py2e/f2py2e.pyc
Found scipy_distutils version '0.3.2_33.550' in '/users/exp/alted/bin-i686/lib/python/scipy_distutils/__init__.pyc'
------
Importing scipy_distutils.command.build_flib ... error: No module named build_flib
------
Checking availability of supported Fortran compilers:
error: local variable 'build_flib' referenced before assignment
------
Importing scipy_distutils.fcompiler ... ok
------
Checking availability of supported Fortran compilers:
List of available Fortran compilers:
--fcompiler=gnu GNU Fortran Compiler (3.2.3)
For compiler details, run 'config_fc --verbose' setup command.
------
Importing scipy_distutils.command.cpuinfo ... error: No module named cpuinfo
Importing scipy_distutils.cpuinfo ... ok
------
CPU information: getNCPUs has_mmx has_sse has_sse2 is_32bit is_Intel ------
------
Atlas version:
[alted at api linalg]$ python -c 'import atlas_version'
Traceback (most recent call last):
File "<string>", line 1, in ?
ImportError: ./atlas_version.so: undefined symbol: ATL_buildinfo
This does not seem to work, but my ATLAS version is 3.6.0. I've also read
http://math-atlas.sourceforge.net/errata.html#completelp in order to get
complete LAPACK support.
------
[alted at api SciPy_complete-0.3.2]$ python scipy_core/scipy_distutils/system_info.py
_pkg_config_info:
NOT AVAILABLE
agg2_info:
( src_dirs = .:/usr/local/src )
NOT AVAILABLE
atlas_blas_info:
( library_dirs = /users/exp/alted/bin-i686/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /users/exp/alted/bin-i686/lib/atlas/libf77blas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/libcblas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/libatlas.a )
system_info.atlas_blas_info
( include_dirs = /users/exp/alted/bin-i686/lib/atlas:/usr/local/include:/usr/include )
( paths: /users/exp/alted/bin-i686/lib/atlas/cblas.h,/users/exp/alted/bin-i686/lib/atlas/cblas.h )
FOUND:
libraries = ['f77blas', 'cblas', 'atlas']
library_dirs = ['/users/exp/alted/bin-i686/lib/atlas']
language = c
include_dirs = ['/users/exp/alted/bin-i686/lib/atlas']
atlas_blas_threads_info:
( library_dirs = /users/exp/alted/bin-i686/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /users/exp/alted/bin-i686/lib/atlas/libptf77blas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/libptcblas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/libatlas.a )
system_info.atlas_blas_threads_info
( include_dirs = /users/exp/alted/bin-i686/lib/atlas:/usr/local/include:/usr/include )
( paths: /users/exp/alted/bin-i686/lib/atlas/cblas.h,/users/exp/alted/bin-i686/lib/atlas/cblas.h )
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/users/exp/alted/bin-i686/lib/atlas']
language = c
include_dirs = ['/users/exp/alted/bin-i686/lib/atlas']
atlas_info:
( library_dirs = /users/exp/alted/bin-i686/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /users/exp/alted/bin-i686/lib/atlas/libf77blas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/libcblas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/libatlas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/liblapack.a )
system_info.atlas_info
( include_dirs = /users/exp/alted/bin-i686/lib/atlas:/usr/local/include:/usr/include )
( paths: /users/exp/alted/bin-i686/lib/atlas/cblas.h,/users/exp/alted/bin-i686/lib/atlas/cblas.h )
FOUND:
libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
library_dirs = ['/users/exp/alted/bin-i686/lib/atlas']
language = f77
include_dirs = ['/users/exp/alted/bin-i686/lib/atlas']
atlas_threads_info:
( library_dirs = /users/exp/alted/bin-i686/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /users/exp/alted/bin-i686/lib/atlas/libptf77blas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/libptcblas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/libatlas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/liblapack.a )
system_info.atlas_threads_info
( include_dirs = /users/exp/alted/bin-i686/lib/atlas:/usr/local/include:/usr/include )
( paths: /users/exp/alted/bin-i686/lib/atlas/cblas.h,/users/exp/alted/bin-i686/lib/atlas/cblas.h )
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/users/exp/alted/bin-i686/lib/atlas']
language = f77
include_dirs = ['/users/exp/alted/bin-i686/lib/atlas']
blas_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/libblas.so )
FOUND:
libraries = ['blas']
library_dirs = ['/usr/lib']
language = f77
blas_opt_info:
running build_src
building extension "atlas_version" sources
adding 'build/src/atlas_version_0x32c8fc2f.c' to sources.
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/users/exp/alted/bin-i686/lib/atlas']
language = c
define_macros = [('ATLAS_INFO', '"\\"3.2.1_pre3.3.6\\""')]
include_dirs = ['/users/exp/alted/bin-i686/lib/atlas']
blas_src_info:
( src_dirs = .:/usr/local/src )
NOT AVAILABLE
boost_python_info:
( src_dirs = .:/usr/local/src )
NOT AVAILABLE
dfftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
NOT AVAILABLE
dfftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
NOT AVAILABLE
djbfft_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
NOT AVAILABLE
fftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
NOT AVAILABLE
fftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
NOT AVAILABLE
freetype2_info:
NOT AVAILABLE
gdk_2_info:
FOUND:
libraries = ['gdk-x11-2.0', 'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 'pangox-1.0', 'pango-1.0', 'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
extra_link_args = ['-Wl,--export-dynamic']
define_macros = [('GDK_2_INFO', '"\\"2.2.4\\""'), ('GDK_VERSION_2_2_4', None)]
include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', '/usr/include/pango-1.0', '/usr/X11R6/include', '/usr/include/freetype2', '/usr/include/glib-2.0', '/usr/lib/glib-2.0/include']
gdk_info:
FOUND:
libraries = ['gdk', 'Xi', 'Xext', 'X11', 'm', 'glib']
library_dirs = ['/usr/X11R6/lib']
define_macros = [('GDK_INFO', '"\\"1.2.10\\""'), ('GDK_VERSION_1_2_10', None)]
include_dirs = ['/usr/include/gtk-1.2', '/usr/X11R6/include', '/usr/include/glib-1.2', '/usr/lib/glib/include']
gdk_pixbuf_2_info:
FOUND:
libraries = ['gdk_pixbuf-2.0', 'm', 'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
extra_link_args = ['-Wl,--export-dynamic']
define_macros = [('GDK_PIXBUF_2_INFO', '"\\"2.2.4\\""'), ('GDK_PIXBUF_VERSION_2_2_4', None)]
include_dirs = ['/usr/include/gtk-2.0', '/usr/include/glib-2.0', '/usr/lib/glib-2.0/include']
gdk_pixbuf_xlib_2_info:
FOUND:
libraries = ['gdk_pixbuf_xlib-2.0', 'gdk_pixbuf-2.0', 'm', 'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
extra_link_args = ['-Wl,--export-dynamic']
define_macros = [('GDK_PIXBUF_XLIB_2_INFO', '"\\"2.2.4\\""'), ('GDK_PIXBUF_XLIB_VERSION_2_2_4', None)]
include_dirs = ['/usr/include/gtk-2.0', '/usr/include/glib-2.0', '/usr/lib/glib-2.0/include']
gdk_x11_2_info:
FOUND:
libraries = ['gdk-x11-2.0', 'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 'pangox-1.0', 'pango-1.0', 'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
extra_link_args = ['-Wl,--export-dynamic']
define_macros = [('GDK_X11_2_INFO', '"\\"2.2.4\\""'), ('GDK_X11_VERSION_2_2_4', None)]
include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', '/usr/include/pango-1.0', '/usr/X11R6/include', '/usr/include/freetype2', '/usr/include/glib-2.0', '/usr/lib/glib-2.0/include']
gtkp_2_info:
FOUND:
libraries = ['gtk-x11-2.0', 'gdk-x11-2.0', 'atk-1.0', 'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 'pangox-1.0', 'pango-1.0', 'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
extra_link_args = ['-Wl,--export-dynamic']
define_macros = [('GTKP_2_INFO', '"\\"2.2.4\\""'), ('GTK_VERSION_2_2_4', None)]
include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', '/usr/include/atk-1.0', '/usr/include/pango-1.0', '/usr/X11R6/include', '/usr/include/freetype2', '/usr/include/glib-2.0', '/usr/lib/glib-2.0/include']
gtkp_x11_2_info:
FOUND:
libraries = ['gtk-x11-2.0', 'gdk-x11-2.0', 'atk-1.0', 'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 'pangox-1.0', 'pango-1.0', 'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
extra_link_args = ['-Wl,--export-dynamic']
define_macros = [('GTKP_X11_2_INFO', '"\\"2.2.4\\""'), ('GTK_X11_VERSION_2_2_4', None)]
include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', '/usr/include/atk-1.0', '/usr/include/pango-1.0', '/usr/X11R6/include', '/usr/include/freetype2', '/usr/include/glib-2.0', '/usr/lib/glib-2.0/include']
lapack_atlas_info:
( library_dirs = /users/exp/alted/bin-i686/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /users/exp/alted/bin-i686/lib/atlas/libf77blas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/libcblas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/libatlas.a )
system_info.lapack_atlas_info
NOT AVAILABLE
lapack_atlas_threads_info:
( library_dirs = /users/exp/alted/bin-i686/lib/atlas:/usr/local/lib:/usr/lib )
( paths: /users/exp/alted/bin-i686/lib/atlas/libptf77blas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/libptcblas.a )
( paths: /users/exp/alted/bin-i686/lib/atlas/libatlas.a )
system_info.lapack_atlas_threads_info
NOT AVAILABLE
lapack_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/liblapack.so )
FOUND:
libraries = ['lapack']
library_dirs = ['/usr/lib']
language = f77
lapack_opt_info:
/scratch1/alted/SciPy_complete-0.3.2/scipy_core/scipy_distutils/system_info.py:812: FutureWarning: hex()/oct() of negative int will return a signed string in Python 2.4 and up
magic = hex(hash(`config`))
running build_src
building extension "atlas_version" sources
adding 'build/src/atlas_version_0xe6b7fbc8.c' to sources.
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize GnuFCompiler
customize GnuFCompiler
customize GnuFCompiler using build_ext
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/users/exp/alted/bin-i686/lib/atlas']
language = f77
define_macros = [('ATLAS_INFO', '"\\"3.2.1_pre3.3.6\\""')]
include_dirs = ['/users/exp/alted/bin-i686/lib/atlas']
lapack_src_info:
( src_dirs = .:/usr/local/src )
NOT AVAILABLE
numarray_info:
( include_dirs = /usr/include/python2.3 )
( paths: /usr/include/python2.3/numarray/arrayobject.h )
FOUND:
define_macros = [('NUMARRAY_VERSION', '"\\"1.1\\""')]
include_dirs = ['/usr/include/python2.3']
numpy_info:
( include_dirs = /usr/include/python2.3 )
( paths: /usr/include/python2.3/Numeric/arrayobject.h )
FOUND:
define_macros = [('NUMERIC_VERSION', '"\\"23.3\\""')]
include_dirs = ['/usr/include/python2.3']
sfftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
NOT AVAILABLE
sfftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
NOT AVAILABLE
wx_info:
FOUND:
libraries = ['wx_gtk-2.5']
extra_link_args = ['-pthread']
library_dirs = ['/users/exp/alted/bin-i686//lib', '/usr/X11R6/lib']
define_macros = [('WX_INFO', '"\\"2.5.2\\""'), ('WX_VERSION_2_5_2', None), ('WX_RELEASE_2_5', None), ('GTK_NO_CHECK_CASTS', None), ('__WXGTK__', None), ('_FILE_OFFSET_BITS', '64'), ('_LARGE_FILES', None)]
include_dirs = ['/users/exp/alted/bin-i686//lib/wx/include/gtk-2.5', '/users/exp/alted/bin-i686//include/wx-2.5']
x11_info:
( library_dirs = /usr/X11R6/lib:/usr/lib )
( include_dirs = /usr/X11R6/include:/usr/include )
( paths: /usr/X11R6/lib/libX11.so )
( paths: /usr/X11R6/include/X11/X.h )
FOUND:
libraries = ['X11']
library_dirs = ['/usr/X11R6/lib']
include_dirs = ['/usr/X11R6/include']
xft_info:
FOUND:
libraries = ['Xft', 'X11', 'freetype', 'Xrender', 'fontconfig']
library_dirs = ['/usr/X11R6/lib']
define_macros = [('XFT_INFO', '"\\"2.1.2\\""'), ('XFT_VERSION_2_1_2', None)]
include_dirs = ['/usr/X11R6/include', '/usr/include/freetype2']
[alted at api SciPy_complete-0.3.2]$ python scipy_core/scipy_distutils/command/build
python: can't open file 'scipy_core/scipy_distutils/command/build'
???
Other useful information:
Running RedHat Linux with
Linux api.uji.es 2.4.21-20.ELsmp #1 SMP Wed Aug 18 20:46:40 EDT 2004 i686 i686 i386 GNU/Linux
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