[SciPy-Dev] Errors in 0.8.x
Charles R Harris
charlesr.harris at gmail.com
Tue Jun 15 22:27:26 EDT 2010
Hi All,
I get some error in the tests:
======================================================================
ERROR: Failure: ValueError (__builtin__.file does not appear to be the
correct type object)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/pymodules/python2.6/nose/loader.py", line 379, in
loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/pymodules/python2.6/nose/importer.py", line 39, in
importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/pymodules/python2.6/nose/importer.py", line 86, in
importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/usr/local/lib/python2.6/dist-packages/scipy/io/__init__.py", line
75, in <module>
from matlab.mio import loadmat, savemat
File "/usr/local/lib/python2.6/dist-packages/scipy/io/matlab/__init__.py",
line 2, in <module>
from mio import loadmat, savemat
File "/usr/local/lib/python2.6/dist-packages/scipy/io/matlab/mio.py", line
13, in <module>
from mio5 import MatFile5Reader, MatFile5Writer
File "/usr/local/lib/python2.6/dist-packages/scipy/io/matlab/mio5.py",
line 90, in <module>
from mio5_utils import VarReader5
File "streams.pxd", line 3, in init scipy.io.matlab.mio5_utils
(scipy/io/matlab/mio5_utils.c:9394)
File "streams.pyx", line 26, in init scipy.io.matlab.streams
(scipy/io/matlab/streams.c:3394)
ValueError: __builtin__.file does not appear to be the correct type object
======================================================================
ERROR: test_decomp.test_lapack_misaligned(<function solve at 0x3851500>,
(array([[ 1.734e-255, 8.189e-217, 4.025e-178, 1.903e-139,
9.344e-101,
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/pymodules/python2.6/nose/case.py", line 183, in runTest
self.test(*self.arg)
File
"/usr/local/lib/python2.6/dist-packages/scipy/linalg/tests/test_decomp.py",
line 1118, in check_lapack_misaligned
func(*a,**kwargs)
File "/usr/local/lib/python2.6/dist-packages/scipy/linalg/basic.py", line
133, in solve
a1, b1 = map(asarray_chkfinite,(a,b))
File "/usr/local/lib/python2.6/dist-packages/numpy/lib/function_base.py",
line 528, in asarray_chkfinite
"array must not contain infs or NaNs")
ValueError: array must not contain infs or NaNs
======================================================================
ERROR: Ticket #1124.
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/usr/local/lib/python2.6/dist-packages/scipy/signal/tests/test_signaltools.py",
line 287, in test_none
signal.medfilt(None)
File "/usr/local/lib/python2.6/dist-packages/scipy/signal/signaltools.py",
line 308, in medfilt
return sigtools._order_filterND(volume,domain,order)
ValueError: order_filterND not available for this type
----------------------------------------------------------------------
Ran 4007 tests in 39.457s
FAILED (KNOWNFAIL=12, SKIP=29, errors=3)
There are also a lot of compiler warnings like:
gfortran:f77: ./lbfgsb/routines.f
Warning: Nonconforming tab character in column 1 of line 510
Are these things already known?
Chuck
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