[SciPy-dev] Now new svn of numpy is ready
John Hunter
jdhunter at ace.bsd.uchicago.edu
Thu Jan 5 09:42:23 EST 2006
>>>>> "Travis" == Travis Oliphant <oliphant at ee.byu.edu> writes:
Travis> My previous post was pre-mature as the fixed numpy was
Travis> only in the numpy branch. I have now finished *merging*
Travis> the changes from the numpy branch into the trunk so
Travis> svn co http://svn.scipy.org/svn/numpy/trunk numpy
I just tried an install with a fresh svn co on solaris 8, and failed.
There were some problems apparently linking with libatlas, I don't
know if these were fatal, but the build eventually dies with
File "/home/titan/johnh/python/svn/numpy/numpy/distutils/misc_util.py", line 443, in add_data_dir
self.add_data_files((ds,filenames))
File "/home/titan/johnh/python/svn/numpy/numpy/distutils/misc_util.py", line 498, in add_data_files
dist.data_files.extend(data_dict.items())
AttributeError: 'NoneType' object has no attribute 'extend'
Below is my complete build and version info.
Thanks,
JDH
Running from numpy source directory.
Assuming default configuration (numpy/distutils/command/{setup_command,setup}.py was not found)
Appending numpy.distutils.command configuration to numpy.distutils
Assuming default configuration (numpy/distutils/fcompiler/{setup_fcompiler,setup}.py was not found)
Appending numpy.distutils.fcompiler configuration to numpy.distutils
Appending numpy.distutils configuration to numpy
Appending numpy.testing configuration to numpy
No module named __svn_version__
Creating numpy/f2py/__svn_version__.py (version='1825')
F2PY Version 2_1825
Appending numpy.f2py configuration to numpy
blas_opt_info:
blas_mkl_info:
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/opt/lib']
language = c
include_dirs = ['/opt/include']
running build_src
building extension "atlas_version" sources
creating build
creating build/src
adding 'build/src/atlas_version_0x4568501b.c' to sources.
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'atlas_version' extension
compiling C sources
gcc options: '-fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC'
creating build/temp.solaris-2.8-i86pc-2.3
creating build/temp.solaris-2.8-i86pc-2.3/build
creating build/temp.solaris-2.8-i86pc-2.3/build/src
compile options: '-I/opt/include -Inumpy/core/include -I/opt/lang/python/include/python2.3 -c'
gcc: build/src/atlas_version_0x4568501b.c
gcc -shared build/temp.solaris-2.8-i86pc-2.3/build/src/atlas_version_0x4568501b.o -L/opt/lib -lptf77blas -lptcblas -latlas -o build/temp.solaris-2.8-i86pc-2.3/atlas_version.so
Text relocation remains referenced
against symbol offset in file
<unknown> 0x7 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xc /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x11 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x16 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x23 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x28 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x38 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x3d /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x4a /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x4f /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x5f /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x64 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x71 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x76 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x8b /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x95 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x9a /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x9f /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xa4 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xb4 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xb9 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xc3 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xc8 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xcd /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xd2 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xe2 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xe7 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xf1 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xf6 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xfb /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x100 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x110 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x115 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x1b /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x2d /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x42 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x54 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x69 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x7b /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x90 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0xa9 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0xbe /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0xd7 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0xec /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x105 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x11a /opt/lib/libatlas.a(ATL_buildinfo.o)
ld: fatal: relocations remain against allocatable but non-writable sections
collect2: ld returned 1 exit status
Text relocation remains referenced
against symbol offset in file
<unknown> 0x7 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xc /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x11 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x16 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x23 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x28 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x38 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x3d /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x4a /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x4f /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x5f /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x64 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x71 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x76 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x8b /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x95 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x9a /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x9f /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xa4 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xb4 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xb9 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xc3 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xc8 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xcd /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xd2 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xe2 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xe7 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xf1 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xf6 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0xfb /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x100 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x110 /opt/lib/libatlas.a(ATL_buildinfo.o)
<unknown> 0x115 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x1b /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x2d /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x42 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x54 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x69 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x7b /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x90 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0xa9 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0xbe /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0xd7 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0xec /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x105 /opt/lib/libatlas.a(ATL_buildinfo.o)
printf 0x11a /opt/lib/libatlas.a(ATL_buildinfo.o)
ld: fatal: relocations remain against allocatable but non-writable sections
collect2: ld returned 1 exit status
##### msg: error: Command "gcc -shared build/temp.solaris-2.8-i86pc-2.3/build/src/atlas_version_0x4568501b.o -L/opt/lib -lptf77blas -lptcblas -latlas -o build/temp.solaris-2.8-i86pc-2.3/atlas_version.so" failed with exit status 1
error: Command "gcc -shared build/temp.solaris-2.8-i86pc-2.3/build/src/atlas_version_0x4568501b.o -L/opt/lib -lptf77blas -lptcblas -latlas -o build/temp.solaris-2.8-i86pc-2.3/atlas_version.so" failed with exit status 1
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/opt/lib']
language = c
define_macros = [('NO_ATLAS_INFO', 2)]
include_dirs = ['/opt/include']
distutils distribution has been initialized, it may be too late to add an extension _dotblas
Traceback (most recent call last):
File "setup.py", line 73, in ?
setup_package()
File "setup.py", line 58, in setup_package
config.add_subpackage('numpy')
File "/home/titan/johnh/python/svn/numpy/numpy/distutils/misc_util.py", line 399, in add_subpackage
config = self.get_subpackage(subpackage_name,subpackage_path)
File "/home/titan/johnh/python/svn/numpy/numpy/distutils/misc_util.py", line 389, in get_subpackage
config = setup_module.configuration(*args)
File "/home/titan/johnh/python/svn/numpy/numpy/setup.py", line 10, in configuration
config.add_subpackage('core')
File "/home/titan/johnh/python/svn/numpy/numpy/distutils/misc_util.py", line 399, in add_subpackage
config = self.get_subpackage(subpackage_name,subpackage_path)
File "/home/titan/johnh/python/svn/numpy/numpy/distutils/misc_util.py", line 389, in get_subpackage
config = setup_module.configuration(*args)
File "numpy/core/setup.py", line 195, in configuration
config.add_data_dir('tests')
File "/home/titan/johnh/python/svn/numpy/numpy/distutils/misc_util.py", line 443, in add_data_dir
self.add_data_files((ds,filenames))
File "/home/titan/johnh/python/svn/numpy/numpy/distutils/misc_util.py", line 498, in add_data_files
dist.data_files.extend(data_dict.items())
AttributeError: 'NoneType' object has no attribute 'extend'
removed numpy/f2py/__svn_version__.py
removed numpy/f2py/__svn_version__.pyc
Python 2.3.4 (#12, Jul 2 2004, 09:48:10)
[GCC 3.3.2] on sunos5
Type "help", "copyright", "credits" or "license" for more information.
>>> import sys
>>> sys.platform
'sunos5'
>>>
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