removing small connected components

Juan Nunez-Iglesias jni.soma at gmail.com
Sun Feb 10 21:01:14 EST 2013


Ah, academia, where the fun never stops! =)

I will both submit this PR and review a few. Thanks for getting back to me!

On Sat, Feb 9, 2013 at 4:31 PM, Tony Yu <tsyu80 at gmail.com> wrote:

> :) I think this would a great addition. I think the only reason you have
> heard anything thus far is that the core devs are pretty busy with other
> things. We could always use more core devs, so if you (or anyone else out
> there) want to review some PRs, I don't think it'd take long for you get
> commit rights.
>
> Unfortunately, I'm also pretty busy these days, so no promises from me of
> reviewing any PRs in the near future. ;)
>
> -Tony
>
> On Wed, Feb 6, 2013 at 7:10 AM, Juan Nunez-Iglesias <jni.soma at gmail.com>wrote:
>
>> Anyone? Bueller? Bueller? =)
>>
>>
>> On Thu, Jan 31, 2013 at 2:19 PM, Juan Nunez-Iglesias <jni.soma at gmail.com>wrote:
>>
>>> Hi guys,
>>>
>>> For my own segmentation package, I wrote a small function to remove
>>> small connected components in an ndarray. You can see it here:
>>>
>>> https://github.com/janelia-flyem/gala/blob/master/gala/morpho.py#L72
>>>
>>> I've been looking at things that could be moved from there to skimage
>>> and I thought that was a prime candidate (I think you actually do the same
>>> thing in one of the examples, but without making it into a function). Any
>>> interest in a PR?
>>>
>>> There's other nd operations in there: morphological reconstruction,
>>> h-minima, regional (aka local) minima, and impose minima. Let me know if
>>> you would like any of these for inclusion in skimage...
>>>
>>> Thanks,
>>>
>>> Juan.
>>>
>>
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