NILEARN - WHY THIS CODE THROWS AN ERROR?????

[MRAB]

On 08/07/2022 14:06, נתי שטרן wrote:
> fullcode:
> 
> 
> 
> import nilearn.plotting as plot
> import os,gzip,io
> import nibabel as nib
> path="C:/users/administrator/desktop/nii"
> path2="C:/users/administrator/desktop/nii/out/"
> for i in os.listdir(path):
>      if(".nii.gz" in i):
>          pass
>      else:
> 
>          if(".nii" in i):
>              img = nib.load(path+"/"+i)
>              data = img.get_fdata()
>              print(data)
>              import imageio
>              X=0
>              for s in data:
>                  import numpy
>                  aleph=numpy.array(s,dtype=numpy.int8)
>                  X=X+1
>                  plot.plot_img(aleph)
> 
>                  imageio.imwrite("C:\\users\\administrator\\desktop\\nii\\"+i
> +str(X)+'.jpg', s)
> 
> 
> 
> 
> 
> 
> error:
> Data given cannot be loaded because it is not compatible with nibabel
> format
> <https://netanel.ml>

What's the complete traceback?

It might help you to identify the problem if you add messages to tell 
you what it's doing, e.g. what file it's about to load.

Apparently, one of the files is not compatible with nibabel.