Getting updates and restarting a long running url request.
Jason Friedman
jsf80238 at gmail.com
Thu Dec 26 01:24:40 EST 2013
> I am using the following code to submit the query/
> def get_BLAST(taxid, queryseq, args=None):
> '''
> Input taxid to BLAST queryseq against
> '''
> e_query = "txid" + taxid + " [ORGN]"
> #, other_advanced='-G 4 -E 1'
> blast_result = NCBIWWW.qblast("blastn", "nt", queryseq, megablast=True,
> entrez_query=e_query, word_size='11', other_advanced='-G 5 -E 2')
> return NCBIXML.read(blast_result)
Could you keep track of success?
result_dict = dict()
for id in taxid_list:
result_dict[id] = False
while not all(result_dict.values()): # continue if not every ID was successful
for id in taxid_list:
if result_dict[id]:
continue # We were already successful with this ID
try:
this_result = get_BLAST(id)
result_dict[id] = True
except:
print("A warning.")
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